Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_019545.1 Length=47355 Score E Sequences producing significant alignments: (Bits) Value seq439 284 4e-72 >seq439 Length=76666 Score = 284 bits (314), Expect = 4e-72 Identities = 560/825 (68%), Gaps = 10/825 (1%) Strand=Plus/Minus Query 482 CGTTATCGTGGTGCTCACGGTGGACGTGGATCTGCTAAGACGCGTACTTTTGCACTAATG 541 |||||||| |||| ||||||| ||||| ||| || ||||| || ||||| |||||| Sbjct 9317 CGTTATCGCTGTGCATACGGTGGGCGTGGCAGTGCAAAAACGCGCACCTTTGCGCTAATG 9258 Query 542 ACTGCCGTCAAAGCGTATCAAGCGGCAGAAGCCAATATCAGT--GGAGTTATCCTGTGCG 599 | || || || || ||||| || ||| | || | ||| || || || || |||| Sbjct 9257 ATGGCGGTTAAGGCTTATCAGGCAGCAAGAAACAGTG--AGTCAGGCGTCATACTTTGCG 9200 Query 600 CTCGAGAATACATGAACTCGCTGGAAGAATCCTCCATGGAGGAGGTAAAGCAGGCAATTC 659 || || | ||||||||||||||||| || ||| |||| || || | |||||| | Sbjct 9199 TGCGTGAGTTTATGAACTCGCTGGAAGAGTCGAGTATGCAGGAAGTGAAACTGGCAATAC 9140 Query 660 GCTCCGTGGCGTGGCTTGACGATTACTTCGACATTGGAGAGAAATACATCAGGACAAAGA 719 || ||| | ||||| | | | |||| || || || || |||||||| | || Sbjct 9139 AGTCAGTGCCATGGCTGGCGGCTCACTTTGATATCGGTGAAAAATACATTCGCACCCTCG 9080 Query 720 ACCGCAAGGTCAGCTATGTATTCTGCGGTCTTCGCCATAACCTAGACAGCATCAAATCAA 779 || | || |||||||| ||| | || ||||| ||||| || ||||| |||||||| | Sbjct 9079 ACAGGCGAGTGAGCTATGTGTTCAGTGGACTTCGGCATAATCTTGACAGTATCAAATCGA 9020 Query 780 AAGCGCGAATTCTTGTAGCCTGGGTTGACGAGGCCGAGTCTGTTTCTTCGACTGCGTGGA 839 |||| || ||||| | |||||| || ||||| || | ||| | || ||| Sbjct 9019 AAGCACGTATTCTGCTGTGCTGGGTGGATGAGGCTGAAACCGTTAGCGAAATAGCCTGGC 8960 Query 840 AAAAGCTTCGCCCGACCGTTCGTGAAGAAGGCTCAGAAATCTGGGTTACGTGGAACCCGG 899 | || || || ||||| || || ||||| ||| | ||||| || |||||||| | Sbjct 8959 AGAAACTCGATCCCACCGTACGAGAGCCTGGCTCTGAAGTATGGGTAACATGGAACCCTG 8900 Query 900 AGAAGGACGGCAGCGCCACCGACAAACTTTTCAGAAAGAATCCCCCAAAAAGCTCAATTA 959 ||| || || ||||| ||||| || | || | ||| || | | | |||| Sbjct 8899 AGACAGAGGGTAGCGCGACCGATAAGCGATTTCGCAAGGAT---AGTGATGACGCCATTA 8843 Query 960 T---TGTCGAGATGAACTATGTTGACAATCCATGGTTCCCCGCGGTGCTTGAGGAAGAGC 1016 | || || |||||||| | || ||||||||||| | | ||||||||| ||| | Sbjct 8842 TCGCGGTTGAAATGAACTACATGGATAATCCATGGTTTCACAGTGTGCTTGAGCAAGTGA 8783 Query 1017 GACAGGAAGACCTGGCAAACCTTGATTACGCAGATTACGCGTGGATATGGGAGGGGGCTT 1076 | ||| ||||| | ||||| | ||| || || ||||| ||||| || || | Sbjct 8782 GGCAGCGGGACCTCCGTATGCTTGACTCGGCAACCTATGCCTGGATTTGGGAAGGCGCGT 8723 Query 1077 ACCTCGAAAACTCAGATAAGCAGGTGCTGGCTAACAAATACGTCGTGCAGAGCTTCGAAG 1136 | || |||||| | |||||||||| || | ||||| || | | | ||| | Sbjct 8722 ATCTGGAAAACGCTAATAAGCAGGTCATGAGTGGGAAATATGTGTTTGAAACGTTCCCGG 8663 Query 1137 ACAATCTATGGAGGAAATCAGAGCGCTTGCTGTTCGGTGCTGACTTCGGATTCGCGAAAG 1196 | |||| |||| | | | || || || | || ||||| || || || || ||| ||| Sbjct 8662 ATGATCTGTGGAAGCAGGCCGATCGGCTGTTCTTTGGTGCCGATTTTGGCTTTGCGCAAG 8603 Query 1197 ACCCCAGCACGCTTATTCGCATGTTCATTCTGGATAACAACCTCTACATCGAATACGAGG 1256 | || | ||||| || ||||||||||| ||||||||| |||||||| |||||||||| Sbjct 8602 ATCCGAATACGCTAATACGCATGTTCATACTGGATAACCGACTCTACATTGAATACGAGG 8543 Query 1257 CCTACGGCAATGGCGTAGAGCTCGACGATATGTGGAAGTTTTATG 1301 | ||||| |||||| || || || || ||| | ||||||| Sbjct 8542 CTTACGGTGTTGGCGTTGAACTGGATGAAATGCCCCAATTTTATG 8498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151411431426054