Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_019708.1 Length=37595 Score E Sequences producing significant alignments: (Bits) Value seq439 226 7e-55 >seq439 Length=76666 Score = 226 bits (250), Expect = 7e-55 Identities = 665/1019 (65%), Gaps = 42/1019 (4%) Strand=Plus/Minus Query 29578 GTTGGCGGTTTTGCTTATATCGCTGAGATCGCAAAGAACACGCCAAGCGCAGCAAACATC 29637 ||||| || ||||| || | || |||| ||| ||| ||||| || ||||| Sbjct 62021 GTTGGTGGATTTGCCTACCTGATGGAAATCGTCAAGTTCACCCCAAGTAGTGCCAACATG 61962 Query 29638 GTTGCTTATGCAATGCA-GGTTCGTGAAACCGCAATGGAACGCTACGCCATCA--ACCGC 29694 || |||||||| ||| ||||||||| |||| ||||| ||||||| ||| || || Sbjct 61961 GTCGCTTATGCC-TGCGTGGTTCGTGATTCCGCCATGGAGCGCTACGGGATCGCTACAGC 61903 Query 29695 ATGACTGAAGCGACGGAATTGCTCTATTCCCGCAACGGAATGACTGCAACGCAGAAGTAC 29754 | | || || | ||| | ||| |||||||||| |||| ||| | |||| Sbjct 61902 AAACCAGATA--ACCGCGTTGTTGTATGCCCGCAACGGTATGAGCACAAGAGAAAAGTTT 61845 Query 29755 GAAGCTATTCAGGCGATTTTCACGCAACTGACAGACCATGCAAAAACCGGATCGCGTCGC 29814 ||| | || || || | || | || | || || || | ||||| || |||||| Sbjct 61844 GAATCAATCCAAACGTTGTTTAGCGAAATTACCGATCACGTCAAAACGGGTAAGCGTCGA 61785 Query 29815 GGCCTTCGCTCATTTGGTGAGGTCATGGAAGACTGGGTTAGCGACCTTGAGAAGCGATT- 29873 || | || | || || || |||| || ||| || ||| | || |||| || Sbjct 61784 GGTGCGAGGCCACTAGGGGACGTGATGGCTGATTGGCTTGACGAAGTAGATCAGCGTTTC 61725 Query 29874 --TGACCCGTCAGGCGAACAACGAGGAATGAGCACAGGGATCCCATCTCTGGACAGGATG 29931 ||| | | || || | ||||||| || || |||||||| || || || | Sbjct 61724 AGTGATACTACT--CGGACTA-GAGGAATTAGAACGGGGATCCCGTCGCTAGATGAACTT 61668 Query 29932 CTGTCACCGAAAGGTCTGGTGAAAGGCTCTCTGTTCGTCATTGGCGCTCGCCCTAAGATG 29991 || ||| || || ||||| || || ||| | ||||| || ||||| || || ||| Sbjct 61667 CTCCAACCCAAGGGACTGGTTCGTGGTTCGCTGATGGTCATCGGTGCTCGTCCCAAAATG 61608 Query 29992 GGGAAAACGACGCTATACAGCCAGATGGCAATCAACTGCGCAGTGCATGAGAAAAAGCCC 30051 || || || ||| | ||| || |||| | || ||||| |||| || || ||| Sbjct 61607 GGCAAGACAACGTTGTACTCACAATTGGCTCTTAATTGCGCCTTGCACGAAAATTTGCCT 61548 Query 30052 GCTCTGATGTTCAGTCTTGAAATGCCAGGCGACCAGATACTGGAAAAGCTGGTAGGACAG 30111 || | ||||||| ||||| ||||||| | | || ||| | || || | || ||| Sbjct 61547 GCCGTACTGTTCAGCCTTGAGATGCCAGACAAGCAAATATTCGAGCGCATGATCGGCCAG 61488 Query 30112 AAGTCAGGTGTTAACCCGAATATTTTTTACCTTCCGGCGACAAATGACGCTGATGACGGC 30171 ||||| | || | ||||||||||| | | | |||| ||| Sbjct 61487 TCATCAGGAATCAATACTGATATTTTTTACTGT------------GGCACTGACAACGA- 61441 Query 30172 TATCAGGGTGATTACGATGGTGACTTCAACAGGGCGATAGAAACAGCAAATCGCTTGAGT 30231 || | |||| || | || | | || | || | | || || | Sbjct 61440 TAGC-----GATTTCGCTTATGCC------AATGCTAAAGCATTGGAAA------TGGTT 61398 Query 30232 GAAATCGACATGCTTTACATCGACGACACGCCGGGATTATCTCTGGCTCAAATCGTCAGC 30291 ||| || || |||| | | || ||||| |||||| ||| || ||| || Sbjct 61397 GAATCCGGCAATCTTTTCGTTGATGACACACCGGGAGCCAGTCTAAGCCATATCATCGCA 61338 Query 30292 GAAAGCCGTCGAATCAAGCGAGAAAAAGGATGTGTTGGCATGATTCTGGTCGATTACCTG 30351 ||||||||| | || ||||| || || || || ||| | ||||||||||||||| Sbjct 61337 GAAAGCCGTAGGATTAAGCGTCAATGCGGTAAGGTAGGTATGGTGCTGGTCGATTACCTG 61278 Query 30352 ACACTAATGACCGCTGAGAAGGCCGATCGCAACGACCTTGCTTACGGCATGATCACCAAA 30411 || || ||| || ||||| ||||| ||||||||| | || ||||| || || ||||| Sbjct 61277 ACGCTTATGCGGGCAGAGAAAGCCGACCGCAACGACTTGGCGTACGGGATTATAACCAAG 61218 Query 30412 GGACTGAAGAACCTTGCCAAAGAGCTTGATTGCGTTGTTGTGCTTCTGACGCAGCTTAAC 30471 ||||| |||||||||||||| |||||||||||| |||| ||||| || || ||| | ||| Sbjct 61217 GGACTCAAGAACCTTGCCAAGGAGCTTGATTGCATTGTGGTGCTGCTAACACAGTTAAAC 61158 Query 30472 CGCGCACTGGAAAGCCGAACCAATAAACGCCCATTACCAAGTGACTCACGAGATACAGGG 30531 |||| || || | || || |||||||| ||||||||| ||||||| || Sbjct 61157 CGCGACCTTGAGAAACGTGTTAACAAACGCCCCCAGCCAAGTGACAGCAGAGATACTGGC 61098 Query 30532 CAGATTGAACAGGATTGCGATTATTGGGTTGGGATCCATCGTGAAGGCGCTTTTGATGA 30590 ||||||||||| || || ||||| ||| | |||||| | || ||||| |||| ||| || Sbjct 61097 CAGATTGAACAAGACTGTGATTACTGGCTGGGGATCTACCGGGAAGGTGCTTATGACGA 61039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 120180043748934