Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_019710.1 Length=40710 Score E Sequences producing significant alignments: (Bits) Value seq731 619 3e-173 >seq731 Length=3676 Score = 619 bits (686), Expect = 3e-173 Identities = 788/1079 (73%), Gaps = 14/1079 (1%) Strand=Plus/Minus Query 2191 CCCCAAATCAGGGCTCACAGACGGGGCCTGTTTCGGCCCACGGATACCTGGGCGATTCAT 2250 |||| ||||| || || || || || ||||||||||| ||| ||| ||||| || | Sbjct 1094 CCCCCAATCAAGGATCGCAAACTGGCCCTGTTTCGGCGTCCGGCAGCCTAGGCGACTCGT 1035 Query 2251 CCATTAACGATGAACGGATACTGCAAATTTCGACTGTGTGGCGCTGCGTGAGCCTGATTT 2310 || || |||| || || ||||||||||| || ||||||||||| || |||||| Sbjct 1034 TGATCAATGATGTGCGCATTCTGCAAATTTCTACCGTGTGGCGCTGTGTTTCATTGATTT 975 Query 2311 CAACGCTCACGGCATGCTTACCGCTTGATGTCTTCGAAACAGACCAGAATGACAACCGTA 2370 | || | ||||| | || || | ||||| || |||||||| || || |||||| Sbjct 974 CGACCTTAACGGCCAGTTTGCCATTAGATGTATTTAAAACAGACGGTAACGATAACCGTG 915 Query 2371 AAAAAGTGGATTTGAGCAATCCACTGGCGCGACTGCTGCGCTACTCACCGAATCAGTACA 2430 || |||| || || || ||||| | | ||||| | || || ||||| |||| Sbjct 914 CCAAGGTGGGGCTGGATAACCCTCTGGCAAGGTTACTGCGTTTTTCTCCCAATCAATACA 855 Query 2431 TGACCGCCCAAGAATTCAGGGAGGCCATGACGATGCAGCTCTGTTTCTACGGTAACGCAT 2490 |||||| || || || | ||| | ||||| ||||| |||||||| ||| |||| || | Sbjct 854 TGACCGTGCAGGAGTTTCGTGAGTCAATGACCATGCAACTCTGTTTTTACAGTAATGCCT 795 Query 2491 ATGCACTTGTGGACCGCAACAGCGCAGGTGACGTGATCAGCCTACTCCCGCTTCAGTCTG 2550 |||| || | || ||||| | | || || ||| | ||||| | ||||| | ||| | Sbjct 794 ATGCGCTGATTGAGCGCAATGGGGTTGGCGATGTGGTTAGCCTTATTCCGCTGCTGTCGG 735 Query 2551 CCAATATGGATGTGAAACTCGTCGGaaaaaaaGTGGTTTATCGCTATCAACGCGACAGCG 2610 ||||||||||||| || | || ||| | |||||||| ||||||||||| | Sbjct 734 CCAATATGGATGTCCGGCTGGAAGGGAAACGCATCGTTTATCGATATCAACGCGATCATG 675 Query 2611 AATACGCCGACTTTTCGC-AGAAAGAGATTTTTCACCTTAAAGGCTTCGGATTCACCGGG 2669 ||| ||| |||||| || || |||| ||||| ||||| || || ||||| || | ||| Sbjct 674 AATTTGCC-ACTTTTAGCCAGCAAGAAATTTTCCACCTGAAGGGATTCGGGTTTAACGGA 616 Query 2670 CTTGTAGGCCTGTCACCCATTGCTTTTGCCTGTAAATCGGCAGGTGTGGCAGTTGCGATG 2729 | || ||| | || || || || ||||||||||| ||| || || || || |||||| Sbjct 615 TTAGTGGGCTTATCTCCGATAGCACATGCCTGTAAATTGGCTGGCGTAGCCGTAGCGATG 556 Query 2730 GAGGACCAGCAGCGAGATTTCTTTGCCAACGGCGCCAAGTCTCCGCAAATCCTCTCAACT 2789 || || |||||||| || |||| ||||||||||| ||||| || |||| || || || Sbjct 555 GAAGATCAGCAGCGTGAGTTCTACGCCAACGGCGCTAAGTCACCCAAAATTCTATCTACA 496 Query 2790 GGCGAAAAAGTGCTAACTGAACAGCAGCGCTCCCAGGTCGAAGAGAACTTCAAAGAGATC 2849 || ||| ||||| || || |||||||| || | ||||||||||||||||| ||| Sbjct 495 GGAGAACGGGTGCTTTCTAAAGAGCAGCGCGAACAATTGGAAGAGAACTTCAAAGAAATC 436 Query 2850 GCCGGCGGCCCGGTaaaaaaaCGCCTCTGGATTCTGGAAGCGGGTTTTTCTACATCGGCA 2909 || |||||||||||||||||||| | ||||| |||| || ||| || | Sbjct 435 GCTGGCGGCCCGGTAAAAAAACGATTGTGGATATTGGAGGCAAACTTTCAGACTCATGAT 376 Query 2910 ATTGGCGTAACTCCGCAGGATGCCGAAATGATGGCGTCCCGAAAATTTCAGGTAAGTGAA 2969 || ||||| | ||||||||||||||||| |||||| || || || || ||||| |||||| Sbjct 375 ATCGGCGTGAGTCCGCAGGATGCCGAAACGATGGCATCTCGTAAGTTCCAGGTCAGTGAA 316 Query 2970 CTGGCGCGATTCTTTGGCGTACCGCCTCACCTTGTCGGCGACGTCGAGAAATCAACGAGC 3029 ||||||||||||||||| ||||| || ||||| || || || || || ||||| || || Sbjct 315 CTGGCGCGATTCTTTGGTGTACCACCACACCTCGTAGGGGATGTGGAAAAATCGACCAGT 256 Query 3030 TGGGGATCGGGCATCGAGCAGCAGAATCTCGGCTTCCTGCAGTACACCCTGCAGCCCTAT 3089 || ||| | ||||||||||| |||||||| || || || ||||||||| |||| || ||| Sbjct 255 TGAGGAACTGGCATCGAGCAACAGAATCTGGGATTTCTCCAGTACACCTTGCAACCGTAT 196 Query 3090 ATCTCCAGGTGGGAAAACAGCATTCAGCGGTGGC---TTATTCCTGCTAAGGATGTTGGC 3146 || ||| | |||||||||||||||||||| |||| | | |||| | ||| ||| Sbjct 195 ATTTCCCGCTGGGAAAACAGCATTCAGCGTTGGCTGTTGAAGCCTGATCAGG----TGG- 141 Query 3147 CGCAT---TCATGCTGAGCACAACCTCGACGGCCTGCTGAGGGGAGATTCGGCATCCCGC 3203 | || ||| || || || || || || |||||| || | || || || ||||| ||| Sbjct 140 -GTATGTATCACGCCGAACATAATCTTGATGGCCTGTTGCGCGGTGACTCTGCATCACGC 82 Query 3204 GCTGCCTTTATGAAGGCAATGGGAGAGTCAGGGCTACGCACCATCAACGAGATGCGACG 3262 ||||| || ||||| | ||||| || || ||| | || ||||||||||| |||| || Sbjct 81 GCTGCGTTCATGAAATCGATGGGCGAATCGGGGTTGCGTACCATCAACGAAGTGCGGCG 23 Score = 618 bits (684), Expect = 1e-172 Identities = 616/796 (77%), Gaps = 2/796 (0%) Strand=Plus/Minus Query 4414 CTGATCCAGCCTATGCAGATCCCAGGCATCATCATGCCAGGCCTGCGCCGTCTTACCATT 4473 || || ||||| ||||| | ||||| ||| | ||||||||| |||| ||| | || Sbjct 2859 CTCATTCAGCCCATGCAAGTGCCAGGTATCGTAATGCCAGGCTTGCGTCGTTTGGTGATC 2800 Query 4474 CGTGATCTGCTGGCTCAGGGCCGCACTTCCAGTAACGCTCTGGAATATGTGCGTGAAGAG 4533 || ||| ||||||| || || || | |||||| ||| | |||||||||||||| ||| || Sbjct 2799 CGCGATTTGCTGGCGCAAGGGCGTATTTCCAGCAACTCGCTGGAATATGTGCGCGAAAAG 2740 Query 4534 GTGTTTACCAATAACGCCGACGTGGTGGCAGAGAAAGCACTGAAGCCAGAATCGGATATC 4593 |||||||||||| |||| | ||| ||| |||| | || || ||||| |||||| Sbjct 2739 CTGTTTACCAATAGCGCCAAGCCAGTGAAAGAAAAAGTGCAAAAACCTGAATCAGATATC 2680 Query 4594 ACCTTCAGCAAACAAACCGCGAACGTGAAGACCATCGCGCACTGGGTGCAGGCATCACGT 4653 |||||| ||| | || || |||||||| ||||||||||| ||||| ||||||| |||| Sbjct 2679 ACCTTCGAAAAAGACACGGCCAACGTGAAAACCATCGCGCATTGGGTTCAGGCATAACGT 2620 Query 4654 CAGGTGATGGATGATGCGCCAATGCTTCAGTCCTACATTAACAACCGCCTCATGTACGGC 4713 ||||||||||||||| |||| |||| || || || | ||||||||||| ||||||| Sbjct 2619 CAGGTGATGGATGATACGCCGGTGCTGCAATCTTATGTAAACAACCGCCTGCTGTACGGT 2560 Query 4714 CTGGCACTGAAGGAAGAGGGCCAGCTGCTGAACGGCGACGGTACCGGGGATAACCTGGAA 4773 |||| ||| ||||||| | |||||||| || ||| | ||| ||||||||||||| | Sbjct 2559 TTGGCGCTGGAGGAAGAAGCTCAGCTGCTCAATGGCAATGGTGCCGGGGATAACCTCAAG 2500 Query 4774 GGGCTGAACAAAGTGGCAACCGCCTATGACACCTCGCTGAATGCCACCGGCGACACCCGC 4833 ||| | || | || || || || || ||||| | | || |||| || |||||| Sbjct 2499 GGGATTAATACCGTTGCCACGGCTTACGACACTACCTTAAACGCCAAGGGTGACACCAAA 2440 Query 4834 GCTGACATTATCGCTCACGCTATTTATCAGGTGACCGAGTCTGAGTTCAGCGCTTCCGGT 4893 ||||||| ||||| ||||| | | ||||| || ||||| |||||||| ||||||||| Sbjct 2439 TCTGACATGATCGCCCACGCCGTCTTCCAGGTAACAGAGTCCGAGTTCAGTGCTTCCGGT 2380 Query 4894 ATCGTCCTGAACCCGCGCGACTGGCACAACATCGCGTTGCTGAAAGACAATGAAGGCCGC 4953 ||| |||| || ||||| |||||||||||||||||| |||| ||||| || || ||| Sbjct 2379 ATCATCCTCAATCCGCGTGACTGGCACAACATCGCGCTGCTAAAAGATGGCGATGGGCGC 2320 Query 4954 TATATCTTCGGTGGTCCTCAGGCATTCACCAGTAACATCATGTGGGGCTTGCCAGTGGTT 5013 |||||||| || ||||| || || || |||| || ||||||||||| ||||| ||||| Sbjct 2319 TATATCTTTGGCGGTCCGCAAGCCTTTGCCAGCAATATCATGTGGGGGTTGCCTGTGGTG 2260 Query 5014 CCGACTAAGGCGCAGGCCGCCGGCACCTTTACCGTAGGCGGTTTCGATATGGCCTCACAG 5073 || || ||| ||||| || ||||||||||| || || |||||| |||| ||||| Sbjct 2259 CCAACCCGGGCACAGGCACAAGGTACCTTTACCGTTGGGGGGTTCGATTTGGCATCACAA 2200 Query 5074 GTCTGGGATCGCATGGATGCCACCGTGGAAGTTAGCCGTGAAGACCGCGATAACTTCGTG 5133 |||||||||||||||||||| || | || || || |||||||| ||||||||||| ||| Sbjct 2199 GTCTGGGATCGCATGGATGCTACTATCGAGGTGAGTCGTGAAGATCGCGATAACTTTGTG 2140 Query 5134 AAAAACATGCTGACCATCCTGTGCGAAGAGCGTCTGGCGCTGGCGCATTATCGCCCGACA 5193 ||||||||||| ||||||||||| || || |||||||| |||| ||||| || || ||| Sbjct 2139 AAAAACATGCTCACCATCCTGTGTGAGGATCGTCTGGCATTGGCACATTACCGACC-ACA 2081 Query 5194 -GCAATCATCAAGGGC 5208 ||||| || || ||| Sbjct 2080 GGCAATTATAAAAGGC 2065 Score = 480 bits (532), Expect = 2e-131 Identities = 592/803 (74%), Gaps = 7/803 (1%) Strand=Plus/Minus Query 3465 TTTTTGAAGGCTACGCCTCTGTTTTTAATAACACCGATTCCGATGGCGACATCATTCTGC 3524 |||| || || |||||||| || ||||| || | ||| || || ||||||||||| |||| Sbjct 3676 TTTTCGAGGGTTACGCCTCGGTCTTTAACAATATCGACTCAGACGGCGACATCATCCTGC 3617 Query 3525 CCGGGGCGTTTAAAAACGCGCTGGCGAACCAGACCCGAAAAGTGGCGATGTTTTTTAACC 3584 |||| || |||||| ||||| | | ||||| || || |||||||||||||| |||| Sbjct 3616 CCGGTGCCTTTAAAGGAGCGCTTGAAACGCAGACACGCAAGGTGGCGATGTTTTTCAACC 3557 Query 3585 ACAGGACGTGGGAACTGCCGGTTGGCAAATGGGACAGC-CTGGCTGAGGACGAAAAAGGC 3643 || | || |||||| | ||||| || || ||||| ||| || || ||| ||||| Sbjct 3556 ACCGCACCTGGGAAATCCCGGTGGGTAAGTGGGA-AGCGCTACAGGAAGACACGAAAGGT 3498 Query 3644 CTGTATGTGCGCGGTCAACTTACCCCAGGACACAGCGGCGCCGCTGACCTGAAAGCGGCA 3703 || | |||||| || || || || || || ||||| ||||| | || ||||||| || Sbjct 3497 CTTTTTGTGCGTGGGCAGCTCACGCCGGGTCACAGTGGCGCAACCGATTTGAAAGCCGCT 3438 Query 3704 ATGCAGCACGGTACGGTTGAAGGTATGTCGGTTGGCTTTTCCGTTTCGAAAGACGATTAC 3763 ||||||||||| || || ||||| ||||| || ||||| | || |||||||||||| Sbjct 3437 ATGCAGCACGGCACAGTAGAAGGCATGTCCGTGGGCTTCTGGGTCAGCAAAGACGATTAC 3378 Query 3764 ACCATCATTCCAACAGGC---CGCATTTTTAAGAATATC-CAGGCTCTGCGCGAAATCAG 3819 | ||| | || | || ||||| || || || || | || ||||| || |||| Sbjct 3377 AGCATTGTCCCCAGCGGTGGGCGCATCTTCAAAAACGTCTCTCGC-CTGCGAGAGGTCAG 3319 Query 3820 CGTCTGCACTTTCCCCGCCAACGAACAGGCTGGCATCGCAGCCATGAAAAGTGTCGATGG 3879 ||| ||||| || || || || |||| ||| || | | ||||||||||||| || || Sbjct 3318 CGTATGCACCTTTCCGGCTAATGAACTGGCGGGGGTATCTGCCATGAAAAGTGCTGAAGG 3259 Query 3880 TATTGAAACGATTCGTGATGTGGAGAACTGGCTGAGGGATTCAGTCGGCCTCACCAAATC 3939 |||||||| ||||||| ||||| ||||||||||||||||||||||| ||| ||| || Sbjct 3258 CATTGAAACCCTTCGTGACGTGGAAAACTGGCTGAGGGATTCAGTCGGTGTCAGCAAGTC 3199 Query 3940 ACAGGCAGTTGGGCTAATTGCCCGGTTTAAGTCAGCGATTCGGAGCGAGTCCGAGGGCGA 3999 ||| || || ||||| ||||||||||| ||||| || ||||||||||||||||| |||| Sbjct 3198 ACAAGCCGTAGGGCTTATTGCCCGGTTCAAGTCTGCCATTCGGAGCGAGTCCGAAAGCGA 3139 Query 4000 CGGAAACGAAGCACAAATAAACGCTCTGCTTCAGAGCATCAAATCTTTCCCTTCTAACTT 4059 || ||| || | | || | ||| || | | ||||||| |||| | | | || Sbjct 3138 CGAGAACAAAACCGACATTACCGCGCTTATCTCGCGCATCAACACTTTTTCAGCCACGTT 3079 Query 4060 AGGTAAATAATTATGTCTGAACTCGCTCTCATTCAAAAAGCTATCGAAGAATCCCAGCAG 4119 ||| |||||| |||||| ||||| | | || ||||| ||| | |||| ||| ||| Sbjct 3078 AGGAAAATAACTATGTCCGAACTTGAACAAATCCAAAAGGCTCTGGAAGCATCACAGGCC 3019 Query 4120 AAAATGACCCAGCTTTTCGATGCGCAGAAAGCAGAAATCGAAAGCACAGGCCAGGTTTCC 4179 ||| | || || || ||||| |||||||| |||||||||||||| |||||| | || Sbjct 3018 AAAGTACAGCAACTGTTTGATGCCCAGAAAGCGGAAATCGAAAGCACTGGCCAGATCTCT 2959 Query 4180 AAACAGTTGCAGTCCGACCTGATGAAAGTACAGGAAGAGCTGACCAAATCCGGCACTCGC 4239 || || ||||| || ||| | | || || |||| || |||||||||| || | | Sbjct 2958 AAGCAATTGCAATCTGACATCGTCAAGGTGCAGGCCGAAATGACCAAATCTGGTCAACAC 2899 Query 4240 CTCTTCGATCTGGAACAGAAACT 4262 || || || |||||||||||||| Sbjct 2898 CTGTTTGACCTGGAACAGAAACT 2876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130147848320064