Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_019711.1 Length=47288 Score E Sequences producing significant alignments: (Bits) Value seq439 230 7e-56 >seq439 Length=76666 Score = 230 bits (254), Expect = 7e-56 Identities = 667/1019 (65%), Gaps = 42/1019 (4%) Strand=Plus/Minus Query 37888 GTTGGCGGTTTTGCTTATATCGCTGAGATCGCAAAGAACACGCCAAGCGCAGCAAACATC 37947 ||||| || ||||| || | || |||| ||| ||| ||||| || ||||| Sbjct 62021 GTTGGTGGATTTGCCTACCTGATGGAAATCGTCAAGTTCACCCCAAGTAGTGCCAACATG 61962 Query 37948 GTTGCTTATGCAATGCA-GGTTCGCGAAACCGCAATGGAACGCTACGCCATCA--ACCGC 38004 || |||||||| ||| |||||| || |||| ||||| ||||||| ||| || || Sbjct 61961 GTCGCTTATGCC-TGCGTGGTTCGTGATTCCGCCATGGAGCGCTACGGGATCGCTACAGC 61903 Query 38005 ATGACTGAAGCGACGGAATTGCTCTATTCCCGCAACGGAATGACTGCAACACAGAAGTAC 38064 | | || || | ||| | ||| |||||||||| |||| ||| | | |||| Sbjct 61902 AAACCAGATA--ACCGCGTTGTTGTATGCCCGCAACGGTATGAGCACAAGAGAAAAGTTT 61845 Query 38065 GAAGCTATTCAGTCGATTTTCACGCAACTGACAGACCATGCAAAAACCGGATCGCGTCGC 38124 ||| | || || || | || | || | || || || | ||||| || |||||| Sbjct 61844 GAATCAATCCAAACGTTGTTTAGCGAAATTACCGATCACGTCAAAACGGGTAAGCGTCGA 61785 Query 38125 GGCCTTCGCTCATTTGGTGAGGTCATGGAAGACTGGGTTAGCGACCTTGAGAAGCGATT- 38183 || | || | || || || |||| || ||| || ||| | || |||| || Sbjct 61784 GGTGCGAGGCCACTAGGGGACGTGATGGCTGATTGGCTTGACGAAGTAGATCAGCGTTTC 61725 Query 38184 --TGACCCGTCAGGCGAACAACGAGGAATGAGCACAGGGATCCCATCGCTGGACAGGATG 38241 ||| | | || || | ||||||| || || |||||||| ||||| || | Sbjct 61724 AGTGATACTACT--CGGACTA-GAGGAATTAGAACGGGGATCCCGTCGCTAGATGAACTT 61668 Query 38242 CTGTCACCGAAAGGTCTGGTGAAAGGCTCTCTGTTTGTCATTGGCGCTCGCCCTAAGATG 38301 || ||| || || ||||| || || ||| | ||||| || ||||| || || ||| Sbjct 61667 CTCCAACCCAAGGGACTGGTTCGTGGTTCGCTGATGGTCATCGGTGCTCGTCCCAAAATG 61608 Query 38302 GGGAAAACGACGCTATACAGCCAGATGGCAATCAACTGCGCAGTGCATGAGAAAAAGCCC 38361 || || || ||| | ||| || |||| | || ||||| |||| || || ||| Sbjct 61607 GGCAAGACAACGTTGTACTCACAATTGGCTCTTAATTGCGCCTTGCACGAAAATTTGCCT 61548 Query 38362 GCTCTGATGTTCAGCCTTGAAATGCCCGGTGACCAGATACTGGAAAAACTGGTAGGACAG 38421 || | ||||||||||||| ||||| | | || ||| | || || | || ||| Sbjct 61547 GCCGTACTGTTCAGCCTTGAGATGCCAGACAAGCAAATATTCGAGCGCATGATCGGCCAG 61488 Query 38422 AAGTCAGGTGTTAACCCGAATATTTTTTACCTTCCGGCGACAAATGACGCTGATGACGGA 38481 ||||| | || | ||||||||||| | ||| | |||| ||| || | Sbjct 61487 TCATCAGGAATCAATACTGATATTTTTTACTGT--GGC----ACTGACAACGATAGCG-A 61435 Query 38482 TATCAGGGTGATTACGATGGTGACTTCAACAGGGCGATCGAAACAGCTAATCGCTTGAGT 38541 | || | | || | ||| | | || | |||| || | Sbjct 61434 TTTC--GCTTATGCCAATGCTAAA---------GCATTGGAAA------------TGGTT 61398 Query 38542 GAAATCGACATGCTTTACATCGACGACACGCCGGGATTATCTCTGGCTCAAATCGTCAGC 38601 ||| || || |||| | | || ||||| |||||| ||| || ||| || Sbjct 61397 GAATCCGGCAATCTTTTCGTTGATGACACACCGGGAGCCAGTCTAAGCCATATCATCGCA 61338 Query 38602 GAAAGCCGTCGAATCAAGCGAGAAAAAGGATGTGTTGGCATGATTCTGGTCGATTACCTG 38661 ||||||||| | || ||||| || || || || ||| | ||||||||||||||| Sbjct 61337 GAAAGCCGTAGGATTAAGCGTCAATGCGGTAAGGTAGGTATGGTGCTGGTCGATTACCTG 61278 Query 38662 ACACTAATGACCGCTGAGAAGGCCGATCGCAACGACCTTGCTTACGGCATGATCACCAAA 38721 || || ||| || ||||| ||||| ||||||||| | || ||||| || || ||||| Sbjct 61277 ACGCTTATGCGGGCAGAGAAAGCCGACCGCAACGACTTGGCGTACGGGATTATAACCAAG 61218 Query 38722 GGACTGAAGAACCTTGCCAAAGAGCTTGATTGCGTTGTTGTGCTTCTGACGCAGCTTAAC 38781 ||||| |||||||||||||| |||||||||||| |||| ||||| || || ||| | ||| Sbjct 61217 GGACTCAAGAACCTTGCCAAGGAGCTTGATTGCATTGTGGTGCTGCTAACACAGTTAAAC 61158 Query 38782 CGCGCACTGGAAAGCAGAACCAATAAACGCCCATTACCAAGTGACTCACGAGATACAGGG 38841 |||| || || | | || |||||||| ||||||||| ||||||| || Sbjct 61157 CGCGACCTTGAGAAACGTGTTAACAAACGCCCCCAGCCAAGTGACAGCAGAGATACTGGC 61098 Query 38842 CAGATTGAACAGGATTGCGATTATTGGGTGGGGATCCATCGTGAAGGCGCTTTTGATGA 38900 ||||||||||| || || ||||| ||| |||||||| | || ||||| |||| ||| || Sbjct 61097 CAGATTGAACAAGACTGTGATTACTGGCTGGGGATCTACCGGGAAGGTGCTTATGACGA 61039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151197035629500