Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08]
1,651 sequences; 315,360,362 total letters
Query= NC_019714.1
Length=39026
Score E
Sequences producing significant alignments: (Bits) Value
seq731 612 5e-171
>seq731
Length=3676
Score = 612 bits (678), Expect = 5e-171
Identities = 615/796 (77%), Gaps = 2/796 (0%)
Strand=Plus/Minus
Query 4321 CTGATCCAGCCTATGCAGATCCCAGGCATCATCATGCCAGGCCTGCGCCGTCTTACCATT 4380
|| || ||||| ||||| | ||||| ||| | ||||||||| |||| ||| | ||
Sbjct 2859 CTCATTCAGCCCATGCAAGTGCCAGGTATCGTAATGCCAGGCTTGCGTCGTTTGGTGATC 2800
Query 4381 CGTGATCTGCTGTCTCAGGGCCGCACTTCCAGTAACGCTCTGGAATATGTGCGTGAAGAG 4440
|| ||| ||||| | || || || | |||||| ||| | |||||||||||||| ||| ||
Sbjct 2799 CGCGATTTGCTGGCGCAAGGGCGTATTTCCAGCAACTCGCTGGAATATGTGCGCGAAAAG 2740
Query 4441 GTGTTTACCAATAACGCCGACGTGGTGGCAGAGAAAGCACTGAAGCCAGAATCGGATATC 4500
|||||||||||| |||| | ||| ||| |||| | || || ||||| ||||||
Sbjct 2739 CTGTTTACCAATAGCGCCAAGCCAGTGAAAGAAAAAGTGCAAAAACCTGAATCAGATATC 2680
Query 4501 ACCTTCAGCAAACAAACCGCGAACGTGAAGACCATCGCGCACTGGGTGCAGGCATCACGT 4560
|||||| ||| | || || |||||||| ||||||||||| ||||| ||||||| ||||
Sbjct 2679 ACCTTCGAAAAAGACACGGCCAACGTGAAAACCATCGCGCATTGGGTTCAGGCATAACGT 2620
Query 4561 CAGGTGATGGATGATGCGCCAATGCTTCAGTCCTACATTAACAACCGCCTCATGTACGGC 4620
||||||||||||||| |||| |||| || || || | ||||||||||| |||||||
Sbjct 2619 CAGGTGATGGATGATACGCCGGTGCTGCAATCTTATGTAAACAACCGCCTGCTGTACGGT 2560
Query 4621 CTGGCACTGAAGGAAGAGGGCCAGCTGCTGAACGGCGACGGTACCGGGGATAACCTGGAA 4680
|||| ||| ||||||| | |||||||| || ||| | ||| ||||||||||||| |
Sbjct 2559 TTGGCGCTGGAGGAAGAAGCTCAGCTGCTCAATGGCAATGGTGCCGGGGATAACCTCAAG 2500
Query 4681 GGGCTGAACAAAGTGGCAACCGCCTATGACACCTCGCTGAATGCCACCGGCGACACCCGC 4740
||| | || | || || || || || ||||| | | || |||| || ||||||
Sbjct 2499 GGGATTAATACCGTTGCCACGGCTTACGACACTACCTTAAACGCCAAGGGTGACACCAAA 2440
Query 4741 GCTGACATTATCGCTCACGCTATTTATCAGGTGACCGAGTCTGAGTTCAGCGCTTCCGGT 4800
||||||| ||||| ||||| | | ||||| || ||||| |||||||| |||||||||
Sbjct 2439 TCTGACATGATCGCCCACGCCGTCTTCCAGGTAACAGAGTCCGAGTTCAGTGCTTCCGGT 2380
Query 4801 ATCGTCCTGAACCCGCGCGACTGGCACAACATCGCGTTGCTGAAAGACAATGAAGGCCGC 4860
||| |||| || ||||| |||||||||||||||||| |||| ||||| || || |||
Sbjct 2379 ATCATCCTCAATCCGCGTGACTGGCACAACATCGCGCTGCTAAAAGATGGCGATGGGCGC 2320
Query 4861 TATATCTTCGGTGGTCCTCAGGCATTCACCAGTAACATCATGTGGGGCTTGCCAGTGGTT 4920
|||||||| || ||||| || || || |||| || ||||||||||| ||||| |||||
Sbjct 2319 TATATCTTTGGCGGTCCGCAAGCCTTTGCCAGCAATATCATGTGGGGGTTGCCTGTGGTG 2260
Query 4921 CCGACTAAGGCGCAGGCCGTCGGCACCTTTACCGTAGGCGGTTTCGATATGGCCTCACAG 4980
|| || ||| ||||| || ||||||||||| || || |||||| |||| |||||
Sbjct 2259 CCAACCCGGGCACAGGCACAAGGTACCTTTACCGTTGGGGGGTTCGATTTGGCATCACAA 2200
Query 4981 GTCTGGGATCGCATGGATGCCACCGTGGAAGTTAGCCGTGAAGACCGCGATAACTTCGTG 5040
|||||||||||||||||||| || | || || || |||||||| ||||||||||| |||
Sbjct 2199 GTCTGGGATCGCATGGATGCTACTATCGAGGTGAGTCGTGAAGATCGCGATAACTTTGTG 2140
Query 5041 AAAAACATGCTGACCATCCTGTGCGAAGAGCGTCTGGCGCTGGCGCATTATCGCCCGACA 5100
||||||||||| ||||||||||| || || |||||||| |||| ||||| || || |||
Sbjct 2139 AAAAACATGCTCACCATCCTGTGTGAGGATCGTCTGGCATTGGCACATTACCGACC-ACA 2081
Query 5101 -GCAATCATCAAGGGC 5115
||||| || || |||
Sbjct 2080 GGCAATTATAAAAGGC 2065
Score = 610 bits (676), Expect = 2e-170
Identities = 786/1079 (73%), Gaps = 14/1079 (1%)
Strand=Plus/Minus
Query 2098 CCCCAAATCAGGGCTCACAGACGGGGCCTGTTTCGGCCCACGGACACCTGGGCGATTCAT 2157
|||| ||||| || || || || || ||||||||||| ||| ||| ||||| || |
Sbjct 1094 CCCCCAATCAAGGATCGCAAACTGGCCCTGTTTCGGCGTCCGGCAGCCTAGGCGACTCGT 1035
Query 2158 CCATTAACGATGAACGGATACTGCAAATTTCGACTGTGTGGCGCTGCGTGAGCCTGATTT 2217
|| || |||| || || ||||||||||| || ||||||||||| || ||||||
Sbjct 1034 TGATCAATGATGTGCGCATTCTGCAAATTTCTACCGTGTGGCGCTGTGTTTCATTGATTT 975
Query 2218 CAACGCTCACGGCATGCTTACCGCTTGATGTCTTCGAAACAGACCAGAATGACAACCGTA 2277
| || | ||||| | || || | ||||| || |||||||| || || ||||||
Sbjct 974 CGACCTTAACGGCCAGTTTGCCATTAGATGTATTTAAAACAGACGGTAACGATAACCGTG 915
Query 2278 AAAAAGTGGATTTGAGCAATCCACTGGCGCGACTGCTGCGCTACTCACCGAATCAGTACA 2337
|| |||| || || || ||||| | | ||||| | || || ||||| ||||
Sbjct 914 CCAAGGTGGGGCTGGATAACCCTCTGGCAAGGTTACTGCGTTTTTCTCCCAATCAATACA 855
Query 2338 TGACCGCCCAAGAATTCAGGGAGGCCATGACGATGCAGCTCTGTTTCTACGGTAACGCAT 2397
|||||| || || || | ||| | ||||| ||||| |||||||| ||| |||| || |
Sbjct 854 TGACCGTGCAGGAGTTTCGTGAGTCAATGACCATGCAACTCTGTTTTTACAGTAATGCCT 795
Query 2398 ATGCACTTGTGGACCGCAACAGCGCAGGTGACGTGATCAGCCTTCTCCCGCTTCAGTCTG 2457
|||| || | || ||||| | | || || ||| | |||||| | ||||| | ||| |
Sbjct 794 ATGCGCTGATTGAGCGCAATGGGGTTGGCGATGTGGTTAGCCTTATTCCGCTGCTGTCGG 735
Query 2458 CCAATATGGATGTGAAACTCGTCGGaaaaaaaGTGGTTTATCGCTATCAACGCAACAGCG 2517
||||||||||||| || | || ||| | |||||||| ||||||||| | |
Sbjct 734 CCAATATGGATGTCCGGCTGGAAGGGAAACGCATCGTTTATCGATATCAACGCGATCATG 675
Query 2518 AATACGCCGACTTTTCGC-AGAAAGAGATTTTTCACCTTAAAGGCTTCGGATTCACCGGG 2576
||| ||| |||||| || || |||| ||||| ||||| || || ||||| || | |||
Sbjct 674 AATTTGCC-ACTTTTAGCCAGCAAGAAATTTTCCACCTGAAGGGATTCGGGTTTAACGGA 616
Query 2577 CTTGTAGGCCTGTCACCCATTGCTTTTGCCTGTAAATCGGCAGGTGTGGCAGTTGCTATG 2636
| || ||| | || || || || ||||||||||| ||| || || || || || |||
Sbjct 615 TTAGTGGGCTTATCTCCGATAGCACATGCCTGTAAATTGGCTGGCGTAGCCGTAGCGATG 556
Query 2637 GAGGACCAGCAGCGAGATTTCTTTGCCAACGGCGCCAAGTCTCCGCAAATCCTCTCAACT 2696
|| || |||||||| || |||| ||||||||||| ||||| || |||| || || ||
Sbjct 555 GAAGATCAGCAGCGTGAGTTCTACGCCAACGGCGCTAAGTCACCCAAAATTCTATCTACA 496
Query 2697 GGCGAAAAAGTGCTAACTGAACAGCAGCGCTCCCAGGTCGAAGAGAACTTCAAAGAGATC 2756
|| ||| ||||| || || |||||||| || | ||||||||||||||||| |||
Sbjct 495 GGAGAACGGGTGCTTTCTAAAGAGCAGCGCGAACAATTGGAAGAGAACTTCAAAGAAATC 436
Query 2757 GCCGGCGGCCCGGTaaaaaaaCGCCTCTGGATTCTGGAAGCTGGTTTTTCTACATCGGCA 2816
|| |||||||||||||||||||| | ||||| |||| || ||| || |
Sbjct 435 GCTGGCGGCCCGGTAAAAAAACGATTGTGGATATTGGAGGCAAACTTTCAGACTCATGAT 376
Query 2817 ATTGGCGTAACTCCGCAGGATGCCGAAATGATGGCGTCCCGAAAATTTCAGGTAAGTGAA 2876
|| ||||| | ||||||||||||||||| |||||| || || || || ||||| ||||||
Sbjct 375 ATCGGCGTGAGTCCGCAGGATGCCGAAACGATGGCATCTCGTAAGTTCCAGGTCAGTGAA 316
Query 2877 CTGGCGCGATTCTTTGGCGTACCGCCTCACCTTGTCGGCGACGTCGAGAAATCAACGAGC 2936
||||||||||||||||| ||||| || ||||| || || || || || ||||| || ||
Sbjct 315 CTGGCGCGATTCTTTGGTGTACCACCACACCTCGTAGGGGATGTGGAAAAATCGACCAGT 256
Query 2937 TGGGGATCGGGCATCGAGCAGCAGAATCTCGGCTTCCTGCAGTACACCCTGCAGCCCTAT 2996
|| ||| | ||||||||||| |||||||| || || || ||||||||| |||| || |||
Sbjct 255 TGAGGAACTGGCATCGAGCAACAGAATCTGGGATTTCTCCAGTACACCTTGCAACCGTAT 196
Query 2997 ATCTCCAGGTGGGAAAACAGCATTCAGCGGTGGC---TTATTCCTGCTAAGGATGTTGGC 3053
|| ||| | |||||||||||||||||||| |||| | | |||| | ||| |||
Sbjct 195 ATTTCCCGCTGGGAAAACAGCATTCAGCGTTGGCTGTTGAAGCCTGATCAGG----TGG- 141
Query 3054 CGCAT---TCATGCTGAGCACAACCTCGACGGCCTGCTGAGGGGCGATTCGGCATCCCGC 3110
| || ||| || || || || || || |||||| || | || || || ||||| |||
Sbjct 140 -GTATGTATCACGCCGAACATAATCTTGATGGCCTGTTGCGCGGTGACTCTGCATCACGC 82
Query 3111 GCTGCCTTTATGAAGGCAATGGGAGAGGCAGGGCTACGCACCATCAACGAGATGCGACG 3169
||||| || ||||| | ||||| || | ||| | || ||||||||||| |||| ||
Sbjct 81 GCTGCGTTCATGAAATCGATGGGCGAATCGGGGTTGCGTACCATCAACGAAGTGCGGCG 23
Score = 489 bits (542), Expect = 4e-134
Identities = 594/803 (74%), Gaps = 7/803 (1%)
Strand=Plus/Minus
Query 3372 TTTTTGAAGGCTACGCCTCTGTTTTTAATAACACCGATTCCGATGGCGACATCATTCTGC 3431
|||| || || |||||||| || ||||| || | ||| || || ||||||||||| ||||
Sbjct 3676 TTTTCGAGGGTTACGCCTCGGTCTTTAACAATATCGACTCAGACGGCGACATCATCCTGC 3617
Query 3432 CCGGGGCGTTTAAAAACGCGCTGGCGAACCAGACCCGAAAAGTGGCGATGTTTTTTAACC 3491
|||| || |||||| ||||| | | ||||| || || |||||||||||||| ||||
Sbjct 3616 CCGGTGCCTTTAAAGGAGCGCTTGAAACGCAGACACGCAAGGTGGCGATGTTTTTCAACC 3557
Query 3492 ACAGGACGTGGGAACTGCCGGTTGGCAAATGGGACAGC-CTGGCTGAAGACGAAAAAGGC 3550
|| | || |||||| | ||||| || || ||||| ||| || |||||| |||||
Sbjct 3556 ACCGCACCTGGGAAATCCCGGTGGGTAAGTGGGA-AGCGCTACAGGAAGACACGAAAGGT 3498
Query 3551 CTGTATGTGCGCGGTCAACTTACCCCAGGACACAGCGGCGCCGCTGACCTGAAAGCGGCA 3610
|| | |||||| || || || || || || ||||| ||||| | || ||||||| ||
Sbjct 3497 CTTTTTGTGCGTGGGCAGCTCACGCCGGGTCACAGTGGCGCAACCGATTTGAAAGCCGCT 3438
Query 3611 ATGCAGCACGGTACGGTTGAAGGTATGTCGGTTGGCTTTTCCGTTTCGAAAGACGATTAC 3670
||||||||||| || || ||||| ||||| || ||||| | || ||||||||||||
Sbjct 3437 ATGCAGCACGGCACAGTAGAAGGCATGTCCGTGGGCTTCTGGGTCAGCAAAGACGATTAC 3378
Query 3671 ACCATCATTCCAACAGGC---CGCATTTTTAAGAATATC-CAGGCTCTGCGCGAAATCAG 3726
| ||| | || | || ||||| || || || || | || ||||| || ||||
Sbjct 3377 AGCATTGTCCCCAGCGGTGGGCGCATCTTCAAAAACGTCTCTCGC-CTGCGAGAGGTCAG 3319
Query 3727 CGTCTGCACTTTCCCCGCCAACGAACAGGCTGGCATCGCAGCCATGAAAAGTGTCGATGG 3786
||| ||||| || || || || |||| ||| || | | ||||||||||||| || ||
Sbjct 3318 CGTATGCACCTTTCCGGCTAATGAACTGGCGGGGGTATCTGCCATGAAAAGTGCTGAAGG 3259
Query 3787 CATTGAAACGATTCGTGATGTGGAGAACTGGCTGAGGGATTCAGTCGGCCTCACCAAATC 3846
||||||||| ||||||| ||||| ||||||||||||||||||||||| ||| ||| ||
Sbjct 3258 CATTGAAACCCTTCGTGACGTGGAAAACTGGCTGAGGGATTCAGTCGGTGTCAGCAAGTC 3199
Query 3847 ACAGGCAGTTGGGCTAATTGCCCGGTTTAAGTCAGCGATTCGGAGCGAGTCCGAGGGCGA 3906
||| || || ||||| ||||||||||| ||||| || ||||||||||||||||| ||||
Sbjct 3198 ACAAGCCGTAGGGCTTATTGCCCGGTTCAAGTCTGCCATTCGGAGCGAGTCCGAAAGCGA 3139
Query 3907 CGGAAACGAAGCACAAATAAACGCTCTGCTTCAGAGCATCAAATCTTTCCCTTCTAACTT 3966
|| ||| || | | || | ||| || | | ||||||| |||| | | | ||
Sbjct 3138 CGAGAACAAAACCGACATTACCGCGCTTATCTCGCGCATCAACACTTTTTCAGCCACGTT 3079
Query 3967 AGGTAAATAATTATGTCTGAACTCGCTCTCATTCAAAAAGCTATCGAAGAATCCCAGCAG 4026
||| |||||| |||||| ||||| | | || ||||| ||| | |||| ||| |||
Sbjct 3078 AGGAAAATAACTATGTCCGAACTTGAACAAATCCAAAAGGCTCTGGAAGCATCACAGGCC 3019
Query 4027 AAAATGACCCAGCTTTTCGATGCGCAGAAAGCAGAAATCGAAAGCACAGGCCAGGTTTCC 4086
||| | || || || ||||| |||||||| |||||||||||||| |||||| | ||
Sbjct 3018 AAAGTACAGCAACTGTTTGATGCCCAGAAAGCGGAAATCGAAAGCACTGGCCAGATCTCT 2959
Query 4087 AAACAGTTGCAGTCCGACCTGATGAAAGTACAGGAAGAGCTGACCAAATCCGGCACTCGC 4146
|| || ||||| || ||| | | || || |||| || |||||||||| || | |
Sbjct 2958 AAGCAATTGCAATCTGACATCGTCAAGGTGCAGGCCGAAATGACCAAATCTGGTCAACAC 2899
Query 4147 CTCTTCGATCTGGAACAGAAACT 4169
|| || || ||||||||||||||
Sbjct 2898 CTGTTTGACCTGGAACAGAAACT 2876
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 124759153970856
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