Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_019721.1 Length=40029 Score E Sequences producing significant alignments: (Bits) Value seq731 610 2e-170 >seq731 Length=3676 Score = 610 bits (676), Expect = 2e-170 Identities = 786/1079 (73%), Gaps = 14/1079 (1%) Strand=Plus/Minus Query 2098 CCCCAAATCAGGGCTCACAGACGGGGCCTGTTTCGGCCCACGGACACCTGGGCGATTCAT 2157 |||| ||||| || || || || || ||||||||||| ||| ||| ||||| || | Sbjct 1094 CCCCCAATCAAGGATCGCAAACTGGCCCTGTTTCGGCGTCCGGCAGCCTAGGCGACTCGT 1035 Query 2158 CCATTAACGATGAACGGATACTGCAAATTTCGACGGTTTGGCGCTGCGTGAGCCTGATTT 2217 || || |||| || || ||||||||||| || || |||||||| || |||||| Sbjct 1034 TGATCAATGATGTGCGCATTCTGCAAATTTCTACCGTGTGGCGCTGTGTTTCATTGATTT 975 Query 2218 CAACGCTCACGGCATGCTTACCGCTTGATGTCTTCGAAACCGACCAGAATGACAACCGaa 2277 | || | ||||| | || || | ||||| || |||| ||| || || ||||| Sbjct 974 CGACCTTAACGGCCAGTTTGCCATTAGATGTATTTAAAACAGACGGTAACGATAACCGTG 915 Query 2278 aaaaaGTGGGTTTGAGCAATCCGCTGGCGCGACTGCTGCGCTACTCACCGAATCAGTACA 2337 || ||||| || || || ||||| | | ||||| | || || ||||| |||| Sbjct 914 CCAAGGTGGGGCTGGATAACCCTCTGGCAAGGTTACTGCGTTTTTCTCCCAATCAATACA 855 Query 2338 TGACCGCCCAGGAATTCAGAGAGGCCATGACGATGCAGCTCTGTTTCTACGGCAACGCGT 2397 |||||| ||||| || | ||| | ||||| ||||| |||||||| ||| | || || | Sbjct 854 TGACCGTGCAGGAGTTTCGTGAGTCAATGACCATGCAACTCTGTTTTTACAGTAATGCCT 795 Query 2398 ATGCACTGGTGGACCGCAACAGCGCAGGTGACGTGATCAGCCTTCTCCCGCTTCAGTCTG 2457 |||| ||| | || ||||| | | || || ||| | |||||| | ||||| | ||| | Sbjct 794 ATGCGCTGATTGAGCGCAATGGGGTTGGCGATGTGGTTAGCCTTATTCCGCTGCTGTCGG 735 Query 2458 CCAATATGGATGTGAAACTCGTCGGaaaaaaaGTGGTTTATCGCTATCAACGCGACAGCG 2517 ||||||||||||| || | || ||| | |||||||| ||||||||||| | Sbjct 734 CCAATATGGATGTCCGGCTGGAAGGGAAACGCATCGTTTATCGATATCAACGCGATCATG 675 Query 2518 AATACGCCGACTTTTCGC-AGAGAGAGATTTTTCACCTTAAATGCTTCGGATTCACCGGG 2576 ||| ||| |||||| || || ||| ||||| ||||| || | ||||| || | ||| Sbjct 674 AATTTGCC-ACTTTTAGCCAGCAAGAAATTTTCCACCTGAAGGGATTCGGGTTTAACGGA 616 Query 2577 CTGGTCGGCCTGTCCCCCATTGCTTTTGCCTGTAAATCGGCAGGTGTGGCAGTTGCGATG 2636 | || ||| | || || || || ||||||||||| ||| || || || || |||||| Sbjct 615 TTAGTGGGCTTATCTCCGATAGCACATGCCTGTAAATTGGCTGGCGTAGCCGTAGCGATG 556 Query 2637 GAGGACCAGCAGCGAGATTTCTTTGCCAACGGCGCCAAGTCTCCGCAAATCCTCTCAACC 2696 || || |||||||| || |||| ||||||||||| ||||| || |||| || || || Sbjct 555 GAAGATCAGCAGCGTGAGTTCTACGCCAACGGCGCTAAGTCACCCAAAATTCTATCTACA 496 Query 2697 GGCGAAAAAGTGCTAACTGAACAGCAGCGCTCGCAGGTCGAAGAGAACTTCAAAGAGATC 2756 || ||| ||||| || || |||||||| || | ||||||||||||||||| ||| Sbjct 495 GGAGAACGGGTGCTTTCTAAAGAGCAGCGCGAACAATTGGAAGAGAACTTCAAAGAAATC 436 Query 2757 GCCGGCGGTCCGGTTAAAAAACGCCTCTGGATTCTGGAAGCGGGCTTTTCCACATCGGCA 2816 || ||||| ||||| |||||||| | ||||| |||| || |||| || | Sbjct 435 GCTGGCGGCCCGGTAAAAAAACGATTGTGGATATTGGAGGCAAACTTTCAGACTCATGAT 376 Query 2817 ATTGGCGTAACGCCGCAGGATGCCGAAATGATGGCGTCCCGAAAATTTCAGGTAAGTGAA 2876 || ||||| | |||||||||||||||| |||||| || || || || ||||| |||||| Sbjct 375 ATCGGCGTGAGTCCGCAGGATGCCGAAACGATGGCATCTCGTAAGTTCCAGGTCAGTGAA 316 Query 2877 CTGGCGCGATTCTTTGGCGTACCGCCTCACCTTGTCGGCGACGTCGAGAAATCAACGAGC 2936 ||||||||||||||||| ||||| || ||||| || || || || || ||||| || || Sbjct 315 CTGGCGCGATTCTTTGGTGTACCACCACACCTCGTAGGGGATGTGGAAAAATCGACCAGT 256 Query 2937 TGGGGATCGGGCATCGAGCAGCAGAATCTCGGCTTCCTGCAGTACACCCTGCAGCCCTAT 2996 || ||| | ||||||||||| |||||||| || || || ||||||||| |||| || ||| Sbjct 255 TGAGGAACTGGCATCGAGCAACAGAATCTGGGATTTCTCCAGTACACCTTGCAACCGTAT 196 Query 2997 ATCTCCCGGTGGGAAAACAGCATTCAGCGGTGGC---TTATTCCTGCTAAGGATGTTGGC 3053 || ||||| |||||||||||||||||||| |||| | | |||| | ||| ||| Sbjct 195 ATTTCCCGCTGGGAAAACAGCATTCAGCGTTGGCTGTTGAAGCCTGATCAGG----TGG- 141 Query 3054 CGCAT---TCATGCTGAGCACAATCTCGACGGCCTGCTGAGGGGCGATTCGGCATCCCGC 3110 | || ||| || || || ||||| || |||||| || | || || || ||||| ||| Sbjct 140 -GTATGTATCACGCCGAACATAATCTTGATGGCCTGTTGCGCGGTGACTCTGCATCACGC 82 Query 3111 GCTGCCTTTATGAAGGCAATGGGAGAGGCAGGGCTACGCACCATCAACGAAATGCGACG 3169 ||||| || ||||| | ||||| || | ||| | || |||||||||||| |||| || Sbjct 81 GCTGCGTTCATGAAATCGATGGGCGAATCGGGGTTGCGTACCATCAACGAAGTGCGGCG 23 Score = 572 bits (634), Expect = 4e-159 Identities = 614/812 (76%), Gaps = 0/812 (0%) Strand=Plus/Minus Query 4309 TCTGCTGGCTCACTGATCCAGCCGATGCAGATCCCCGGCATCATCATGCCAGGACTGCGC 4368 ||||| || | || || ||||| ||||| | || || ||| | |||||||| |||| Sbjct 2871 TCTGCGGGGGCGCTCATTCAGCCCATGCAAGTGCCAGGTATCGTAATGCCAGGCTTGCGT 2812 Query 4369 CGTCTGACCATTCGTGACCTGCTGGCGCAGGGCCGCATCTCCAGCAACGCTCTGGAATAC 4428 ||| || || || || |||||||||| || || || ||||||||| | |||||||| Sbjct 2811 CGTTTGGTGATCCGCGATTTGCTGGCGCAAGGGCGTATTTCCAGCAACTCGCTGGAATAT 2752 Query 4429 GTCCGTGAAGAGGTGTTTACCAATAACGCCGACGTGGTGGCCGAGAAAGCGCTGAAGCCC 4488 || || ||| || |||||||||||| |||| | ||| || |||| || || || Sbjct 2751 GTGCGCGAAAAGCTGTTTACCAATAGCGCCAAGCCAGTGAAAGAAAAAGTGCAAAAACCT 2692 Query 4489 GAATCGGATATCACCTTCAGTAAGCAAACCGCGAACGTGAAGACGATCGCCCACTGGGTG 4548 ||||| |||||||||||| || | || || |||||||| || ||||| || ||||| Sbjct 2691 GAATCAGATATCACCTTCGAAAAAGACACGGCCAACGTGAAAACCATCGCGCATTGGGTT 2632 Query 4549 CAGGCATCGCGTCAGGTTATGGACGATGCGCCAATGCTGCAGTCATACGTCAACAACCGC 4608 ||||||| |||||||| ||||| ||| |||| ||||||| || || || ||||||||| Sbjct 2631 CAGGCATAACGTCAGGTGATGGATGATACGCCGGTGCTGCAATCTTATGTAAACAACCGC 2572 Query 4609 CTCATGTACGGCCTGGCGCTGAAGGAGGAAGGTCAACTGCTGAACGGTGACGGTACCGGG 4668 || ||||||| |||||||| |||| |||| ||| ||||| || || | ||| ||||| Sbjct 2571 CTGCTGTACGGTTTGGCGCTGGAGGAAGAAGCTCAGCTGCTCAATGGCAATGGTGCCGGG 2512 Query 4669 GATAACATCGAAGGTTTGAACAAAGTGGCCACCGCTTACGACACCTCGCTGAATGCCACT 4728 |||||| || | || | || | || ||||| ||||||||||| | | || |||| Sbjct 2511 GATAACCTCAAGGGGATTAATACCGTTGCCACGGCTTACGACACTACCTTAAACGCCAAG 2452 Query 4729 GGCGACACCCGCGCTGACATTATCGCTCACGCTATTTATCAGGTGACAGAGTCTGAGTTT 4788 || |||||| ||||||| ||||| ||||| | | ||||| |||||||| ||||| Sbjct 2451 GGTGACACCAAATCTGACATGATCGCCCACGCCGTCTTCCAGGTAACAGAGTCCGAGTTC 2392 Query 4789 AGCGCTTCCGGTATTGTCCTGAACCCGCGGGACTGGCACAACATCGCGCTGCTGAAAGAC 4848 || ||||||||||| |||| || ||||| ||||||||||||||||||||||| ||||| Sbjct 2391 AGTGCTTCCGGTATCATCCTCAATCCGCGTGACTGGCACAACATCGCGCTGCTAAAAGAT 2332 Query 4849 AATGAAGGCCGCTATATCTTCGGTGGTCCTCAGGCGTTTACCAGCAACATCATGTGGGGC 4908 || || ||||||||||| || ||||| || || ||| ||||||| ||||||||||| Sbjct 2331 GGCGATGGGCGCTATATCTTTGGCGGTCCGCAAGCCTTTGCCAGCAATATCATGTGGGGG 2272 Query 4909 CTGCCAGTGGTTCCGACTAAGGCGCAGGCCGCCGGCACCTTTACGGTGGGCGGTTTCGAT 4968 |||| ||||| || || ||| ||||| || |||||||| || || || |||||| Sbjct 2271 TTGCCTGTGGTGCCAACCCGGGCACAGGCACAAGGTACCTTTACCGTTGGGGGGTTCGAT 2212 Query 4969 ATGGCCTCTCAGGTCTGGGATCGCATGAATGCCACCGTGGAAGTCAGCCGTGACGACCGC 5028 |||| || || ||||||||||||||| |||| || | || || || ||||| || ||| Sbjct 2211 TTGGCATCACAAGTCTGGGATCGCATGGATGCTACTATCGAGGTGAGTCGTGAAGATCGC 2152 Query 5029 GACAACTTCGTGAAAAACATGCTGACCATTCTGTGCGAAGAGCGCCTGGCGCTGGCGCAC 5088 || ||||| |||||||||||||| ||||| ||||| || || || ||||| |||| || Sbjct 2151 GATAACTTTGTGAAAAACATGCTCACCATCCTGTGTGAGGATCGTCTGGCATTGGCACAT 2092 Query 5089 TATCGCCCGGCGGCCATCATCAAGGGCACTTT 5120 || || || ||| || || || ||| |||| Sbjct 2091 TACCGACCACAGGCAATTATAAAAGGCGCTTT 2060 Score = 495 bits (548), Expect = 9e-136 Identities = 595/803 (74%), Gaps = 7/803 (1%) Strand=Plus/Minus Query 3372 TTTTTGAAGGCTACGCCTCTGTTTTTAATAACACCGATTCCGATGGCGACATCATTCTGC 3431 |||| || || |||||||| || ||||| || | ||| || || ||||||||||| |||| Sbjct 3676 TTTTCGAGGGTTACGCCTCGGTCTTTAACAATATCGACTCAGACGGCGACATCATCCTGC 3617 Query 3432 CCGGGGCGTTTAAAAACGCACTGGCGAACCAGACCCGCAAAGTGGCGATGTTTTTCAACC 3491 |||| || |||||| || || | | ||||| ||||| ||||||||||||||||||| Sbjct 3616 CCGGTGCCTTTAAAGGAGCGCTTGAAACGCAGACACGCAAGGTGGCGATGTTTTTCAACC 3557 Query 3492 ACAAGACGTGGGAGCTGCCGGTTGGTAAATGGGACAGCCTGGCAG-AAGACGAAAAAGGC 3550 || || ||||| | ||||| ||||| ||||| ||| ||| ||||| ||||| Sbjct 3556 ACCGCACCTGGGAAATCCCGGTGGGTAAGTGGGA-AGCGCTACAGGAAGACACGAAAGGT 3498 Query 3551 CTGTATGTGCGCGGTCAACTTACCCCAGGGCACAGCGGCGCCGCCGACCTGAAAGCGGCA 3610 || | |||||| || || || || || || ||||| ||||| |||| ||||||| || Sbjct 3497 CTTTTTGTGCGTGGGCAGCTCACGCCGGGTCACAGTGGCGCAACCGATTTGAAAGCCGCT 3438 Query 3611 ATGCAGCACGGTACGGTTGAAGGTATGTCGGTTGGCTTTTCCGTTGCGAAAGACGATTAC 3670 ||||||||||| || || ||||| ||||| || ||||| | || |||||||||||| Sbjct 3437 ATGCAGCACGGCACAGTAGAAGGCATGTCCGTGGGCTTCTGGGTCAGCAAAGACGATTAC 3378 Query 3671 ACCATCATTCCAACAGGC---CGCATTTTTAAGAATATC-CAGGCTCTGCGCGAAATCAG 3726 | ||| | || | || ||||| || || || || | || ||||| || |||| Sbjct 3377 AGCATTGTCCCCAGCGGTGGGCGCATCTTCAAAAACGTCTCTCGC-CTGCGAGAGGTCAG 3319 Query 3727 CGTCTGCACTTTCCCCGCCAACGAACAGGCTGGCATCGCAGCCATGAAAAGTGTCGATGG 3786 ||| ||||| || || || || |||| ||| || | | ||||||||||||| || || Sbjct 3318 CGTATGCACCTTTCCGGCTAATGAACTGGCGGGGGTATCTGCCATGAAAAGTGCTGAAGG 3259 Query 3787 CATTGAAACGATCCGTGATGTTGAGAACTGGCTGAGGGATTCAGTCGGCCTCACCAAATC 3846 ||||||||| | ||||| || || ||||||||||||||||||||||| ||| ||| || Sbjct 3258 CATTGAAACCCTTCGTGACGTGGAAAACTGGCTGAGGGATTCAGTCGGTGTCAGCAAGTC 3199 Query 3847 ACAGGCAGTAGGGCTAATAGCCCGGTTTAAGTCAGCGATTCGGAGCGAGTCCGAGGGCGA 3906 ||| || |||||||| || |||||||| ||||| || ||||||||||||||||| |||| Sbjct 3198 ACAAGCCGTAGGGCTTATTGCCCGGTTCAAGTCTGCCATTCGGAGCGAGTCCGAAAGCGA 3139 Query 3907 CGGAAACGAAGCACAAATCAACGCTCTGCTTCAGAGCATCAAATCTTTCCCTTCTAATTT 3966 || ||| || | | || | ||| || | | ||||||| |||| | | | || Sbjct 3138 CGAGAACAAAACCGACATTACCGCGCTTATCTCGCGCATCAACACTTTTTCAGCCACGTT 3079 Query 3967 AGGTAATTAATTATGTCTGAACTCGCTCTCATTCAAAAAGCTATCGAAGAATCCCAGCAG 4026 ||| || ||| |||||| ||||| | | || ||||| ||| | |||| ||| ||| Sbjct 3078 AGGAAAATAACTATGTCCGAACTTGAACAAATCCAAAAGGCTCTGGAAGCATCACAGGCC 3019 Query 4027 AAAATGTCTCAACTTTTCGATGCGCAGAAAGCAGAAATCGAAAGCACTGGCCAGGTTTCC 4086 ||| | ||||| || ||||| |||||||| ||||||||||||||||||||| | || Sbjct 3018 AAAGTACAGCAACTGTTTGATGCCCAGAAAGCGGAAATCGAAAGCACTGGCCAGATCTCT 2959 Query 4087 AAACAGCTGCAGTCCGACCTGGCAAAAGTGCAGGAAGAACTGACCAAATCCGGTGCGCGT 4146 || || |||| || ||| | | || ||||||| ||| |||||||||| ||| | Sbjct 2958 AAGCAATTGCAATCTGACATCGTCAAGGTGCAGGCCGAAATGACCAAATCTGGTCAACAC 2899 Query 4147 CTCTTCGATCTGGAACAGAAACT 4169 || || || |||||||||||||| Sbjct 2898 CTGTTTGACCTGGAACAGAAACT 2876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127968691044642