Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_019723.1 Length=47090 Score E Sequences producing significant alignments: (Bits) Value seq439 233 6e-57 >seq439 Length=76666 Score = 233 bits (258), Expect = 6e-57 Identities = 410/597 (69%), Gaps = 0/597 (0%) Strand=Plus/Minus Query 31166 CCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAA 31225 ||| ||||| ||||| ||| |||| |||||| | ||| |||||| |||| || || Sbjct 70427 CCACTGCTCGCCAAAGGTAAAGCCAAGTTCAGCTAACGCCATATCCATTCTTTCTATAAA 70368 Query 31226 CTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTTCATCCCGCTCAATCACGACATA 31285 ||| || ||| ||| ||||| | | ||||| || || || || ||||| | ||| | Sbjct 70367 CTCTGGTACGGACTCTTCAAATTTTGAAATGTATTTATCGTCTCGTTCAATAATGACGTT 70308 Query 31286 ATGCAGGCCTTCACGCTTCATACGCGGGTCATAGTTGGCAAAGTACCAGGCATTTTTTCG 31345 || || |||||||| ||||| || ||||||||||| ||||| | ||| || | ||| | Sbjct 70307 GTGAAGTCCTTCACGTTTCATTCGAGGGTCATAGTTAGCAAAATGCCATGCGTCTTTCCC 70248 Query 31346 CGTCACCCACATGCTGTACTGCACCTGGGCCATGTAAGCTGACTTTATGGCCTCGAAACC 31405 ||| ||||||||||| |||| ||||| ||||| || | || || ||| | || || || Sbjct 70247 CGTAACCCACATGCTAAACTGGACCTGAGCCATATATTCCGATTTGATGCCGTCAAAGCC 70188 Query 31406 ACCGAGCCGGAACTTCATGAAATCCCGGGAGGTAAACGGGCATTTCAGTTCAAGGCCGTT 31465 | || | || || || || || || || ||||| || || || | |||||| || Sbjct 70187 ATTCAGTCTAAAATTAATAAAGTCGCGTGATGTAAATGGACACTTTAATTCAAGTCCCAG 70128 Query 31466 GCCGTCACTGCATAAACCATCGGGAGAGCAGGCGGTACGCATACTTTCGTCGCGATAGAT 31525 || ||||| || |||||||| ||||| || ||||||| ||||| | || Sbjct 70127 CCCATCACTACAGTCGCCATCGGGGGAGCACGCTACACGCATATCGTCGTCCTTGAATAT 70068 Query 31526 GATCGGGGATTCAGTAACATTCACGCCGGAAGTGAATTCAAACAGGGTTCTGGCGTCGTT 31585 ||| ||| || |||| | | || | |||||| |||||||| ||| || | | Sbjct 70067 GATGGGGACGTCGATAACGGTTAACCCTGTAGTGAACTCAAACAGTCGTCTTGCTACCTC 70008 Query 31586 CTCGTACTGTTTTCCCCAGGCCAGTGCTTTAGCGTTAACTTCCGGAGCCACACCGGTGCA 31645 |||| | ||||||||| | || | | || || ||||| |||| ||||| || Sbjct 70007 TTCGTTTTCTTTTCCCCATTCTAGCGGCCTTGCCTTCACTTCGGGAGATTGCCCGGTACA 69948 Query 31646 AACCTCAGCAAGCAGGGTGTGGAAGTAGGACATTTTCATGTCAGGCCACTTCTTTCCGGA 31705 || ||| |||| ||| ||| |||||| ||| ||| | || | ||| || || || || Sbjct 69947 AATCTCGGCAATCAGCTTGTTGAAGTAAGACCGCTTCGTATCCGTCCATTTGTTGCCTGA 69888 Query 31706 GCGGGGTTTTGCTATCACGTTGTGAACTTCTGAAGCGGTGATGACGCCGAGCCGTAA 31762 || || | | |||||| | | | ||||| ||||| ||| |||| || || || Sbjct 69887 ACGTGGGCTGGAAATCACGCAGGAAGCCTCTGAGGCGGTTATGGCGCCAAGGCGCAA 69831 Score = 212 bits (234), Expect = 2e-50 Identities = 665/1020 (65%), Gaps = 44/1020 (4%) Strand=Plus/Minus Query 38205 GTTGGCGGTTTTGCTTATATCGCTGAGATCGCAAAGAACACGCCGAGCGCCGCAAACATC 38264 ||||| || ||||| || | || |||| ||| ||| || || || ||||| Sbjct 62021 GTTGGTGGATTTGCCTACCTGATGGAAATCGTCAAGTTCACCCCAAGTAGTGCCAACATG 61962 Query 38265 GTTGCCTATGCAATGCA-GGTTCGTGAAACCGCAATGGAACGCTACGCCATCA--ACCGC 38321 || || ||||| ||| ||||||||| |||| ||||| ||||||| ||| || || Sbjct 61961 GTCGCTTATGCC-TGCGTGGTTCGTGATTCCGCCATGGAGCGCTACGGGATCGCTACAGC 61903 Query 38322 ATGACTGAAGCGACGGAATTGCTCTATTCCCGCAACGGAATGACTGCAACGCAGAAGTAC 38381 | | || || | ||| | ||| |||||||||| |||| ||| | |||| Sbjct 61902 AAACCAGATA--ACCGCGTTGTTGTATGCCCGCAACGGTATGAGCACAAGAGAAAAGTTT 61845 Query 38382 GAAGCTATTCAGGCGATTTTCACGCAACTGACAGACCATGCAAAAACCGGATCGCGTCGC 38441 ||| | || || || | || | || | || || || | ||||| || |||||| Sbjct 61844 GAATCAATCCAAACGTTGTTTAGCGAAATTACCGATCACGTCAAAACGGGTAAGCGTCGA 61785 Query 38442 GGCCTTCGCTCATTTGGTGAGGTCATGGAAGACTGGGTTAGCGACCTTGAGAAGCGATT- 38500 || | || | || || || |||| || ||| || ||| | || |||| || Sbjct 61784 GGTGCGAGGCCACTAGGGGACGTGATGGCTGATTGGCTTGACGAAGTAGATCAGCGTTTC 61725 Query 38501 --TGACCCGTCAGGCGAACAGCGAGGAATGAGCACAGGGATCCCATCGCTGGACAGGATG 38558 ||| | | | || || |||||| || || |||||||| ||||| || | Sbjct 61724 AGTGATACTACTCG-GACTAG--AGGAATTAGAACGGGGATCCCGTCGCTAGATGAACTT 61668 Query 38559 CTGTCACCGAAAGGTCTGGTGAAAGGTTCTCTGTTTGTCATTGGCGCTCGCCCTAAGATG 38618 || ||| || || ||||| ||||| ||| | ||||| || ||||| || || ||| Sbjct 61667 CTCCAACCCAAGGGACTGGTTCGTGGTTCGCTGATGGTCATCGGTGCTCGTCCCAAAATG 61608 Query 38619 GGGAAAACGACGCTATACAGCCAGATGGCAATCAACTGCGCAGTGCATGAGAAAAAGCCC 38678 || || || ||| | ||| || |||| | || ||||| |||| || || ||| Sbjct 61607 GGCAAGACAACGTTGTACTCACAATTGGCTCTTAATTGCGCCTTGCACGAAAATTTGCCT 61548 Query 38679 GCTCTGATGTTCAGCCTTGAAATGCCAGGTGACCAGATACTGGAAAAACTGGTAGGGCAG 38738 || | ||||||||||||| ||||||| | || ||| | || || | || ||| Sbjct 61547 GCCGTACTGTTCAGCCTTGAGATGCCAGACAAGCAAATATTCGAGCGCATGATCGGCCAG 61488 Query 38739 AAGTCTGGTGTTAACCCGAATATTTTTTACCTTCCGGCGACAAATGACGCTGATGACGGC 38798 || || | || | ||||||||||| | ||| | |||| ||| || Sbjct 61487 TCATCAGGAATCAATACTGATATTTTTTACTGT--GGC----ACTGACAACGATAGCGAT 61434 Query 38799 TATCAGGGTGATTACGATGGTGACTTCAACAGGGCGATCGAAACAGCCAATCGCTTGAGT 38858 | || | | || | ||| | | || | |||| || | Sbjct 61433 T-TC--GCTTATGCCAATGCTAAA---------GCATTGGAAA------------TGGTT 61398 Query 38859 GAAATCGACATGCTTTACATCGACGACACGCCGGGATTATCTCTGGCTCAAATCGTCAGC 38918 ||| || || |||| | | || ||||| |||||| ||| || ||| || Sbjct 61397 GAATCCGGCAATCTTTTCGTTGATGACACACCGGGAGCCAGTCTAAGCCATATCATCGCA 61338 Query 38919 GAAAGCCGTCGAATCAAGCGAGAAAAAGGATGTGTTGGCATGATTCTGGTCGATTACCTG 38978 ||||||||| | || ||||| || || || || ||| | ||||||||||||||| Sbjct 61337 GAAAGCCGTAGGATTAAGCGTCAATGCGGTAAGGTAGGTATGGTGCTGGTCGATTACCTG 61278 Query 38979 ACACTAATGACCGCTGAAAAGGCCGATCGCAACGACCTTGCTTACGGCATGATCACCAAA 39038 || || ||| || || || ||||| ||||||||| | || ||||| || || ||||| Sbjct 61277 ACGCTTATGCGGGCAGAGAAAGCCGACCGCAACGACTTGGCGTACGGGATTATAACCAAG 61218 Query 39039 GGACTGAAGAACCTTGCCAAAGAGCTTGATTGCGTTGTTGTGCTTCTGACGCAGCTTAAC 39098 ||||| |||||||||||||| |||||||||||| |||| ||||| || || ||| | ||| Sbjct 61217 GGACTCAAGAACCTTGCCAAGGAGCTTGATTGCATTGTGGTGCTGCTAACACAGTTAAAC 61158 Query 39099 CGCG-CATTGGAAAGCAGAACCAATAAACGCCCATTACCAAGTGACTCACGAGATACAGG 39157 |||| | ||| || | | || |||||||| ||||||||| ||||||| || Sbjct 61157 CGCGACCTTGAGAAAC-GTGTTAACAAACGCCCCCAGCCAAGTGACAGCAGAGATACTGG 61099 Query 39158 GCAGATTGAACAGGATTGCGATTATTGGGTGGGGATCCATCGTGAAGGCGCTTTTGATGA 39217 ||||||||||| || || ||||| ||| |||||||| | || ||||| |||| ||| || Sbjct 61098 CCAGATTGAACAAGACTGTGATTACTGGCTGGGGATCTACCGGGAAGGTGCTTATGACGA 61039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150563448051624