Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_019927.1 Length=47611 Score E Sequences producing significant alignments: (Bits) Value seq439 289 9e-74 >seq439 Length=76666 Score = 289 bits (320), Expect = 9e-74 Identities = 429/600 (72%), Gaps = 6/600 (1%) Strand=Plus/Minus Query 11519 TCCATTGTTCGCCGAAGGTGAAGCCAATCTCTGCAAGCGCCATGTCCATTTTTTCAATGA 11578 |||| || ||||| ||||| ||||||| || || | |||||| |||||| |||| || | Sbjct 70428 TCCACTGCTCGCCAAAGGTAAAGCCAAGTTCAGCTAACGCCATATCCATTCTTTCTATAA 70369 Query 11579 ACTCTGGCACCGCTTCCGTGAAGTCTTCCATGTACTTTTCATCACGCTCGACAACGACAT 11638 ||||||| || | || || | | ||||| || || || || || | || ||| | Sbjct 70368 ACTCTGGTACGGACTCTTCAAATTTTGAAATGTATTTATCGTCTCGTTCAATAATGACGT 70309 Query 11639 GATGAAGTCCTTCGCGCCTCATTCGCGGGTCATAATTCGAAAAGTACCAGGCGTCCTTGC 11698 ||||||||||| || ||||||| |||||||| || | ||| | ||| ||||| || | Sbjct 70308 TGTGAAGTCCTTCACGTTTCATTCGAGGGTCATAGTTAGCAAAATGCCATGCGTCTTTCC 70249 Query 11699 CGGTTACCCACATGCTGAACTGCACCTGAGCCATGTAGGCCGACTTAATGGCTTCAAATC 11758 | || ||||||||||| ||||| ||||||||||| || |||| || ||| | ||||| | Sbjct 70248 CCGTAACCCACATGCTAAACTGGACCTGAGCCATATATTCCGATTTGATGCCGTCAAAGC 70189 Query 11759 CGCCGAGGCGGAATTTCATGAAGTCGCGAGAAGTGAAAGGGCACTTAAGCTCAAGCCCGC 11818 | || | || || || |||||||| || || || || ||||| | ||||| || Sbjct 70188 CATTCAGTCTAAAATTAATAAAGTCGCGTGATGTAAATGGACACTTTAATTCAAGTCCCA 70129 Query 11819 GGCCATCACTGCAAAGCCCGTCCGGTGAGCATGCAGTGCGCATGGTTTCGTCCTTGTAGA 11878 | |||||||| || || || || ||||| || ||||| ||||||||| | | Sbjct 70128 GCCCATCACTACAGTCGCCATCGGGGGAGCACGCTACACGCATATCGTCGTCCTTGAATA 70069 Query 11879 TAATCGGCGAC-TCGGTTAC-CTGAACGCCGGCAGTAAATTCAAACAGGGCTCTTGCGTC 11936 | || || ||| ||| | || | ||| || | ||| || |||||||| |||||| | Sbjct 70068 TGAT-GGGGACGTCGATAACGGTTAAC-CCTGTAGTGAACTCAAACAGTCGTCTTGCTAC 70011 Query 11937 ATCCTCGTATTGTTTGCCCCATGCCAGAGCCCTGGCATTAACTTCAGGAGCTACGCCGGT 11996 || |||| || ||| |||||| | || | ||| || || ||||| |||| | ||||| Sbjct 70010 CTCTTCGTTTTCTTTTCCCCATTCTAGCGGCCTTGCCTTCACTTCGGGAGATTGCCCGGT 69951 Query 11997 ACACACCTCAGCGAGAAGGGTGTGGAAGTAAGACATCTTCATGTCCGGCCATTTTTTACC 12056 ||| | ||| || | || ||| |||||||||| |||| | |||| |||||| || || Sbjct 69950 ACAAATCTCGGCAATCAGCTTGTTGAAGTAAGACCGCTTCGTATCCGTCCATTTGTTGCC 69891 Query 12057 TGAGCGTGGTTTTGATATGACGTTATGAA-CATCTGATGCGGTGATAACTCCGAGGCGCA 12115 ||| ||||| | || || ||| | ||| | ||||| ||||| || | || ||||||| Sbjct 69890 TGAACGTGGGCTGGAAATCACG-CAGGAAGCCTCTGAGGCGGTTATGGCGCCAAGGCGCA 69832 Score = 145 bits (160), Expect = 2e-30 Identities = 237/339 (70%), Gaps = 2/339 (1%) Strand=Plus/Minus Query 18762 ATTAAGCGCGAGCGTGGCGAGGTGGGGATGGTTCTTGTCGACTACCTGACGCTCATGGCT 18821 |||||||| | | || |||| || ||||| || ||||| ||||||||||| ||| Sbjct 61325 ATTAAGCGTCAATGCGGTAAGGTAGGTATGGTGCTGGTCGATTACCTGACGCTTATGCGG 61266 Query 18822 GCCGAGAAGGCGGATACCGA-GTCTCAGGCGTACGGAATCATCACCAAAGGTCTCAAGGT 18880 || ||||| || || | | | || ||||||||| || || ||||| || |||||| Sbjct 61265 GCAGAGAAAGCCGACCGCAACGACTT-GGCGTACGGGATTATAACCAAGGGACTCAAGAA 61207 Query 18881 ACTGGCTAAAGAGCTTAACTGCGTTGTCGTGCTTCTGACGCAGCTTAACCGCGGTTCCGA 18940 || || || |||||| | ||| |||| ||||| || || ||| | ||||||| || Sbjct 61206 CCTTGCCAAGGAGCTTGATTGCATTGTGGTGCTGCTAACACAGTTAAACCGCGACCTTGA 61147 Query 18941 GGCTCGCGCCAATAAGCGACCGCAGCCGAGCGACTCACGCTCTACCGGCCAGATTGAGCA 19000 | || | || || || || ||||| || ||| | ||| ||||||||||| || Sbjct 61146 GAAACGTGTTAACAAACGCCCCCAGCCAAGTGACAGCAGAGATACTGGCCAGATTGAACA 61087 Query 19001 GGACTGTGACTACTGGCTCGGTATCTATCGCGAATCGGAGGATGACGACACGGTTAACCC 19060 |||||||| |||||||| || ||||| || ||| | ||||||| | | ||| | Sbjct 61086 AGACTGTGATTACTGGCTGGGGATCTACCGGGAAGGTGCTTATGACGAAAACGCTAATCA 61027 Query 19061 GGCAGAAACAGAGCTGCTTTTGCGACTCAACCGCCACGG 19099 | ||| || || ||||||| || |||||| | || || Sbjct 61026 GCAAGATACCGAATTGCTTTTACGTCTCAACAGGCATGG 60988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152230615365126