Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_019932.1 Length=29564 Score E Sequences producing significant alignments: (Bits) Value seq552 138 2e-28 >seq552 Length=31981 Score = 138 bits (152), Expect = 2e-28 Identities = 268/390 (69%), Gaps = 17/390 (4%) Strand=Plus/Minus Query 27254 GCCGCCAGTCCTGCACGGGTACGCTCAACAATCAGCTCGCGCTCCATTTCCGCCAGCGCC 27313 || |||| ||||| ||||||||||||||||| || ||||| || | |||| ||| Sbjct 30993 GCTGCCAAACCTGCCTTAGTACGCTCAACAATCAGTTCTCGCTCTATCTGTGCCAACGCA 30934 Query 27314 CCCATAACATGAAAAAAGAAGCGGCCCATTGGCGTACTGGTATCAAT-GCTGTCGGTCAG 27372 | ||| |||||||| || || ||||| | ||| ||||||||| | || |||| Sbjct 30933 CTCATCACATGAAAGAAAAAACGGCCAGAGGATGTAGAGGTATCAATTGGAATCCGTCAA 30874 Query 27373 GCTGCGGAAGTTTATTCCTTTTTCGCGCAGTTCCTCAGTCAGCATAACCAGATGGCGCAT 27432 || | || | || ||| || ||||| | | ||| || ||| || Sbjct 30873 ACTATGAAAATAAATATCTTCATCTTCCAGTTTGGATATTAAAGTAATCAAATGTTTAAT 30814 Query 27433 GCTGCGGCCAAGACGATCCAGCTTCCACACCACCAGTGTGTCGCC----TTCC-TGCAGA 27487 ||||| || || | ||||| |||||| || || | |||||||| ||| |||| Sbjct 30813 ACTGCGACCCAGTCTATCCATCTTCCAGACGACTAAAGTGTCGCCCGATTTCAGTGCATC 30754 Query 27488 CAGCGCAGTGCTTTTTTCAGTCCCGGCCT---GTCTGACTTTTTCCCGCTTATTCTGTCT 27544 ||||| || ||| | ||| || || ||||| |||| ||||| ||| | || Sbjct 30753 TAGCGC---GCGTTTA--AATCCGGGTCTCTGGTCTG---TTTTTCCGCTGATTTTATCC 30702 Query 27545 TCAAAAATCAGTTCACAATTTGCGCTCTGCAGCGCGTTACGCTGCAAATCAGTGTTCTGG 27604 ||||||||| ||||||||||||||| || | || |||| ||||| ||||| ||| Sbjct 30701 TCAAAAATCTGTTCACAATTTGCGCAAATCAAGGATTTTTGCTGTAAATCGGTGTTTTGG 30642 Query 27605 TCATTTGTTGACACCCTGATATAGCCAATC 27634 |||||| |||||||||| |||||||| ||| Sbjct 30641 TCATTTTTTGACACCCTCATATAGCCTATC 30612 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 94481347597812