Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_019934.1 Length=39012 Score E Sequences producing significant alignments: (Bits) Value seq731 618 1e-172 >seq731 Length=3676 Score = 618 bits (684), Expect = 1e-172 Identities = 614/795 (77%), Gaps = 0/795 (0%) Strand=Plus/Plus Query 13450 GCCCTTGATGATTGCCGTCGGGCGATAGTGCGCCAGCGCCAGGCGCTCTTCACACAGGAT 13509 ||| || || |||||| || || || || |||| ||||| || || ||||||||||| Sbjct 2065 GCCTTTTATAATTGCCTGTGGTCGGTAATGTGCCAATGCCAGACGATCCTCACACAGGAT 2124 Query 13510 TGTCAGCATGTTTTTCACGAAGTTATCGCGGTCTTCACGGCTGACTTCCACGGTGGCATC 13569 || |||||||||||||| ||||||||||| |||||||| || || || | || ||||| Sbjct 2125 GGTGAGCATGTTTTTCACAAAGTTATCGCGATCTTCACGACTCACCTCGATAGTAGCATC 2184 Query 13570 CATGCGATCCCACACCTGCGAGGCCATATCAAAACCGCCCACCGTAAAGGTGCCAGCGGC 13629 |||||||||||| || || || |||| ||| || || || || |||||||| || || Sbjct 2185 CATGCGATCCCAGACTTGTGATGCCAAATCGAACCCCCCAACGGTAAAGGTACCTTGTGC 2244 Query 13630 CTGCGCCTTAGTCGGAACCACTGGCAGGCCCCACATGATGTTGCTGGTAAACGCCTGAGG 13689 ||| ||| || || ||||| |||| ||||||||||| ||||||| ||| || || || Sbjct 2245 CTGTGCCCGGGTTGGCACCACAGGCAACCCCCACATGATATTGCTGGCAAAGGCTTGCGG 2304 Query 13690 ACCACCGAAGATATAGCGGCCTTCGTTGTCTTTCAGCAGCGCGATGTTGTGCCAGTCGCG 13749 ||| || ||||||||||| || ||| ||||| ||||||||||||||||||||||| || Sbjct 2305 ACCGCCAAAGATATAGCGCCCATCGCCATCTTTTAGCAGCGCGATGTTGTGCCAGTCACG 2364 Query 13750 CGGGTTCAGGACGATACCGGAAGCGCTAAACTCAGACTCTGTCACCTGGTAAATAGCGTG 13809 ||| || |||| |||||||||||| || ||||| |||||||| |||||| | | ||||| Sbjct 2365 CGGATTGAGGATGATACCGGAAGCACTGAACTCGGACTCTGTTACCTGGAAGACGGCGTG 2424 Query 13810 AGCGATAATGTCAGCGCGGGTGTCGCCAGTGGCATTCAGCGAGGTGTCGTAGGCGGTTGC 13869 ||||| ||||||| |||||| || |||| || | | |||||||| || || || Sbjct 2425 GGCGATCATGTCAGATTTGGTGTCACCCTTGGCGTTTAAGGTAGTGTCGTAAGCCGTGGC 2484 Query 13870 CACTTTGTTCAGACCTTCCAGGTTATCCCCGGTACCGTCGCCGTTCAGCAGCTGGCCTTC 13929 || | || | || | ||||||||||||| ||| | ||| || |||||||| |||| Sbjct 2485 AACGGTATTAATCCCCTTGAGGTTATCCCCGGCACCATTGCCATTGAGCAGCTGAGCTTC 2544 Query 13930 TTCCTTCAGCGCCAGACCGTACATGAGGCGGTTGTTGACGTATGACTGCAGCATTGGCGC 13989 ||||| |||||||| |||||||| ||||||||||| || || || ||||||| |||| Sbjct 2545 TTCCTCCAGCGCCAAACCGTACAGCAGGCGGTTGTTTACATAAGATTGCAGCACCGGCGT 2604 Query 13990 ATCGTCCATAACCTGACGTGACGCCTGCACCCAGTGGGCGATGGTCTTCACGTTTGCGGT 14049 ||| ||||| ||||||||| | ||||| ||||| || |||||||| |||||||| || || Sbjct 2605 ATCATCCATCACCTGACGTTATGCCTGAACCCAATGCGCGATGGTTTTCACGTTGGCCGT 2664 Query 14050 CTGCTTGCTGAAGGTAATATCCGATTCAGGTTTCAGCGCCTTCTCGGCCACCACATCGGC 14109 | || |||||| ||||| ||||||||||| || | || || ||| | ||| Sbjct 2665 GTCTTTTTCGAAGGTGATATCTGATTCAGGTTTTTGCACTTTTTCTTTCACTGGCTTGGC 2724 Query 14110 GTTATTGGTAAACACTTCTTCACGGACATATTCCAGGGAGTTACTGGAAATGCGGCCCTG 14169 | |||||||||||| | ||| || ||||||||||| ||||| |||||||| || || || Sbjct 2725 GCTATTGGTAAACAGCTTTTCGCGCACATATTCCAGCGAGTTGCTGGAAATACGCCCTTG 2784 Query 14170 CGCCAGCAGATCACGAATGGTCAGACGGCGCAGGCCCGGCATGATGATGCCTGGAACCTG 14229 |||||||| ||| || || || ||| |||| ||| ||||| | ||| ||||| || || Sbjct 2785 CGCCAGCAAATCGCGGATCACCAAACGACGCAAGCCTGGCATTACGATACCTGGCACTTG 2844 Query 14230 CATCGGCTGGATCAG 14244 ||| ||||| || || Sbjct 2845 CATGGGCTGAATGAG 2859 Score = 610 bits (676), Expect = 2e-170 Identities = 789/1079 (73%), Gaps = 14/1079 (1%) Strand=Plus/Plus Query 15396 CGTCGCATCTCGTTGATGGTGCGTAGCCCTGCCTCTCCCATTGCCTTCATAAAGGCTGCG 15455 || |||| ||||||||||| || | ||| | || ||||| | ||||| || || ||| Sbjct 23 CGCCGCACTTCGTTGATGGTACGCAACCCCGATTCGCCCATCGATTTCATGAACGCAGCG 82 Query 15456 CGGGATGCCGAATCGCCCCTCAGCAGGCCGTCGAGGTTGTGCTCAGCATGAATGCGTCCA 15515 || ||||| || || || | || |||||| || || || || || || ||| | | | | Sbjct 83 CGTGATGCAGAGTCACCGCGCAACAGGCCATCAAGATTATGTTCGGCGTGA-TACATACC 141 Query 15516 ACATCCTTAGCAGGAATAA---GCCACCGCTGAATGCTGTTTTCCCACCGGGAGATATAG 15572 || ||| | |||| | | |||| |||||||||||||||||||| ||||| ||||| Sbjct 142 -CA-CCTGATCAGGCTTCAACAGCCAACGCTGAATGCTGTTTTCCCAGCGGGAAATATAC 199 Query 15573 GGCTGCAGGGTGTACTGCAGGAAGCCTAGATTCTGCTGCTCGATGCCCGATCCCCAGCTC 15632 || |||| ||||||||| || || || |||||||| ||||||||||| | ||| || || Sbjct 200 GGTTGCAAGGTGTACTGGAGAAATCCCAGATTCTGTTGCTCGATGCCAGTTCCTCAACTG 259 Query 15633 GTTGATTTCTCGACGTCGCCGACAAGGTGAGGCGGTACGCCAAAGAATCGCGCCAGTTCA 15692 || ||||| || || || || || ||||| || ||||| ||||||||||||||||||||| Sbjct 260 GTCGATTTTTCCACATCCCCTACGAGGTGTGGTGGTACACCAAAGAATCGCGCCAGTTCA 319 Query 15693 CTTACCTGAAATTTTCGTGACGCCATCATTTCGGCATCCTGAGGCGTTACGCCAATTGCC 15752 || ||||| || || || || |||||| ||||||||||||| || | ||||| || | Sbjct 320 CTGACCTGGAACTTACGAGATGCCATCGTTTCGGCATCCTGCGGACTCACGCCGATATC- 378 Query 15753 GATGTG---GAAAATCCCGCTTCCAGAATCCAGAGGCGTTTTTTAACCGGACCGCCTGCT 15809 ||| | |||| | || |||| ||||| | |||||||| ||||| ||||| || Sbjct 379 -ATGAGTCTGAAAGTTT-GCCTCCAATATCCACAATCGTTTTTTTACCGGGCCGCCAGCG 436 Query 15810 ATCTCTTTGAAGTTCTCTTCGACCTGCGAGCGCTGCTGTTCAGTTAGCACTTTTTCGCCG 15869 || ||||||||||||||||| | || |||||||| || || ||||| ||| || Sbjct 437 ATTTCTTTGAAGTTCTCTTCCAATTGTTCGCGCTGCTCTTTAGAAAGCACCCGTTCTCCT 496 Query 15870 GTTGAGAGGATTTGCGGAGACTTGGCGCCGTTGGCAAAGAAATCTCGCTGCTGGTCCTCC 15929 || || || |||| || ||||| ||||||||||| |||| || |||||||| || ||| Sbjct 497 GTAGATAGAATTTTGGGTGACTTAGCGCCGTTGGCGTAGAACTCACGCTGCTGATCTTCC 556 Query 15930 ATCGCAACTGCTACACCTGCCGATTTACAGGCAAAAGCAATTGGTGACAGGCCAACAAGT 15989 ||||| || ||||| || ||| ||||||||||| || || || || | ||| || | | Sbjct 557 ATCGCTACGGCTACGCCAGCCAATTTACAGGCATGTGCTATCGGAGATAAGCCCACTAAT 616 Query 15990 CCGGTGAATCCGAAGCCTTTAAGGTGAAAAATCTCTCTCT-GCGAAAAGTCGGCGTATTC 16048 ||| | || ||||| || || ||||| ||||| ||| || || |||||| ||| |||| Sbjct 617 CCGTTAAACCCGAATCCCTTCAGGTGGAAAATTTCTTGCTGGCTAAAAGT-GGCAAATTC 675 Query 16049 GCTGTCGCGTTGATAGCGATAAACCACtttttttCCGACGAGTTTCACATCCATATTGGC 16108 ||||||||||| |||||||| | ||| || | || |||||||||||||| Sbjct 676 ATGATCGCGTTGATATCGATAAACGATGCGTTTCCCTTCCAGCCGGACATCCATATTGGC 735 Query 16109 AGACTGAAGCGGGAGAAGGCTGATCACGTCACCCGCGCTGTTGCGGTCCACCAGTGCATA 16168 ||| | ||||| | |||||| | ||| || || | | ||||| || | ||| ||||| Sbjct 736 CGACAGCAGCGGAATAAGGCTAACCACATCGCCAACCCCATTGCGCTCAATCAGCGCATA 795 Query 16169 TGCGTTACCGTAGAAACAGAGCTGCATCGTCATGGCCTCCCTGAATTCCTGGGCGGTCAT 16228 || |||| ||| |||||||| ||||| ||||| | ||| | || ||||| ||||||| Sbjct 796 GGCATTACTGTAAAAACAGAGTTGCATGGTCATTGACTCACGAAACTCCTGCACGGTCAT 855 Query 16229 GTACTGATTCGGTGAGTAGCGCAGCAATCGCGCCAGCGGATTGCTCAAACCCACTTTTTT 16288 ||| ||||| || || | ||||| || | ||||| || || || ||||| || Sbjct 856 GTATTGATTGGGAGAAAAACGCAGTAACCTTGCCAGAGGGTTATCCAGCCCCACCTTGGC 915 Query 16289 GCGATTGTCATTCTGGTCGGTTTCGAAGACATCAAGCGGTAAGCATGCCGTGAGCGTTGA 16348 || || || || ||| |||| || ||||| | || || | ||||| | || || Sbjct 916 ACGGTTATCGTTACCGTCTGTTTTAAATACATCTAATGGCAAACTGGCCGTTAAGGTCGA 975 Query 16349 AATCAGGCTCACGCAGCGCCAAACCGTCGAAATTTGCAGTAACCGTTCATCGTTAATGGA 16408 ||||| || |||||||| || || ||||||||||| | || |||| || || | Sbjct 976 AATCAATGAAACACAGCGCCACACGGTAGAAATTTGCAGAATGCGCACATCATTGATCAA 1035 Query 16409 TGAATCGCCCAGGTGTCCGTGGGCCGAAACAGGCCCCGTCTGCGATCCCTGATTTGGGG 16467 || ||||| ||| ||| ||||||||||| || || |||||||| ||||| |||| Sbjct 1036 CGAGTCGCCTAGGCTGCCGGACGCCGAAACAGGGCCAGTTTGCGATCCTTGATTGGGGG 1094 Score = 473 bits (524), Expect = 3e-129 Identities = 594/809 (73%), Gaps = 7/809 (1%) Strand=Plus/Plus Query 14390 GAGGCCAGTTTCTGCTCAAGATCGAAGAGGCGAGTGCCGGATTTGGTCAGTTCTTCCTGT 14449 |||| |||||||| || || || || ||| | || |||||||||| ||| |||| Sbjct 2870 GAGGAGAGTTTCTGTTCCAGGTCAAACAGGTGTTGACCAGATTTGGTCATTTCGGCCTGC 2929 Query 14450 ACTTTCGCAAGGTCCGACTGCAGCTGCTTAGAAACCTTGCCAGTGCTTTCGATTTCTGCT 14509 || || | | ||| || |||| |||||||| | || |||||||||||||||||| ||| Sbjct 2930 ACCTTGACGATGTCAGATTGCAATTGCTTAGAGATCTGGCCAGTGCTTTCGATTTCCGCT 2989 Query 14510 TTCTGGGCATCGAAAAGCTGGGACATTTTCTGCTGTGACTCTTCGATGGCTTTTTGAATG 14569 ||||||||||| || || || | ||| |||||| |||| | || ||||| || Sbjct 2990 TTCTGGGCATCAAACAGTTGCTGTACTTTGGCCTGTGATGCTTCCAGAGCCTTTTGGATT 3049 Query 14570 AGAGCGAGTTCAGACATAATTAATTACCTAAATTAGAAGGGAAAGATTTGATGCTCTGAA 14629 | | ||||| |||||| ||| || ||||| | | | |||| ||||||| | | Sbjct 3050 TGTTCAAGTTCGGACATAGTTATTTTCCTAACGTGGCTGAAAAAGTGTTGATGCGCGAGA 3109 Query 14630 GCAGAGCGTTGATTTGTGCTTCGTTTCCGTCGCCTTCGGACTCGCTCCGAATCGCTGACT 14689 || ||| | || | | || ||| |||||| |||||||||||||||||| || |||| Sbjct 3110 TAAGCGCGGTAATGTCGGTTTTGTTCTCGTCGCTTTCGGACTCGCTCCGAATGGCAGACT 3169 Query 14690 TAAACCGGGCTATTAACCCAACTGCCTGTGATTTGGTGAGCCCGACTGAATCCCTCAGCC 14749 | |||||||| || | ||| || || ||||| ||| ||| ||||||||||||||||||| Sbjct 3170 TGAACCGGGCAATAAGCCCTACGGCTTGTGACTTGCTGACACCGACTGAATCCCTCAGCC 3229 Query 14750 AGTTCTCCACATCACGGATCGTTTCAATGCCATCGACACTTTTCATGGCTGCGATGCCAG 14809 |||| ||||| ||||| | ||||||||||| || ||||||||||||| | | || | Sbjct 3230 AGTTTTCCACGTCACGAAGGGTTTCAATGCCTTCAGCACTTTTCATGGCAGATACCCCCG 3289 Query 14810 CCTGTTCGTTGGCGGGGAAAGTGCAGACGCTGATTTCGCGCAGAGCCTG-GATATTCTTA 14868 || |||| || || || || ||||| ||||||| || ||||| || | || || || Sbjct 3290 CCAGTTCATTAGCCGGAAAGGTGCATACGCTGACCTCTCGCAG-GCGAGAGACGTTTTTG 3348 Query 14869 AAAACGCG---TCCTGTTGGAATGATGGTGTAATCGTCTTTCGCAACGGAAAAGCCAACC 14925 || | ||| || | || | ||| ||||||||||||| || | ||||| || Sbjct 3349 AAGATGCGCCCACCGCTGGGGACAATGCTGTAATCGTCTTTGCTGACCCAGAAGCCCACG 3408 Query 14926 GACATACCTTCAACCGTACCGTGCTGCATTGCCGCTTTCAGGTCGGCGGCGCCGCTGTGC 14985 ||||| ||||| || || ||||||||||| || ||||||| |||| ||||| ||||| Sbjct 3409 GACATGCCTTCTACTGTGCCGTGCTGCATAGCGGCTTTCAAATCGGTTGCGCCACTGTGA 3468 Query 14986 CCTGGGGTAAGTTGACCGCGCACATACAGGCCTTTTTCGTCTTCGGCCAG-GCTGTCCCA 15044 || || || || || || |||||| | || ||||| |||||| || ||| ||||| Sbjct 3469 CCCGGCGTGAGCTGCCCACGCACAAAAAGACCTTTCGTGTCTTCCTGTAGCGCT-TCCCA 3527 Query 15045 TTTACCAACCGGCAGCTCCCACGTCTTGTGGTTGAAAAACATCGCCACTTTTCGGGTCTG 15104 ||||| ||||| | ||||| || ||||||||||||||||||||| || || ||||| Sbjct 3528 CTTACCCACCGGGATTTCCCAGGTGCGGTGGTTGAAAAACATCGCCACCTTGCGTGTCTG 3587 Query 15105 GTTCGCCAGTGCGTTTTTAAACGCCCCGGGCAGAATGATGTCTCCGTCGGAATCGGTGTT 15164 | | || || |||||| || |||||||| |||||||| ||||| || ||| | || Sbjct 3588 CGTTTCAAGCGCTCCTTTAAAGGCACCGGGCAGGATGATGTCGCCGTCTGAGTCGATATT 3647 Query 15165 ATTAAAAACAGAGGCATAACCTTCaaaaa 15193 ||||| || ||||| ||||| || |||| Sbjct 3648 GTTAAAGACCGAGGCGTAACCCTCGAAAA 3676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124714354849188