Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq1 104 2e-17 seq53 98.7 8e-16 >seq1 Length=10097680 Score = 104 bits (114), Expect = 2e-17 Identities = 165/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 28550 AAAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACC 28609 |||||||||||| || || ||||| | || || ||||| ||||| ||| || || Sbjct 7547385 AAAAATGCAAATTTTCGTTAAAACTCTTACTGGCAAAACAATTACTTTGGAAGTTGAGCC 7547444 Query 28610 TTCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGA 28669 ||| || || | | || ||||| ||||| ||||||||||| | || ||| Sbjct 7547445 TTCCGACACTATTGAAAATGTCAAGGCCAAAATTCAGGACAAAGAGGGCATTCCTCCAGA 7547504 Query 28670 TCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTA 28729 ||| || | | ||||| || |||||||||||||||||| ||| || | ||||| Sbjct 7547505 TCAGCAACGTTTGATCTTCGCTGGCAAACAATTGGAAGATGGGCGGACTTTGTCTGATTA 7547564 Query 28730 TAACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGATAAT 28786 || || || |||||||| || |||| ||||| | | || ||||| || ||||| Sbjct 7547565 CAATATACAGAAAGAATCGACATTGCATTTGGTACTTCGTTTGCGAGGTGGTATAAT 7547621 >seq53 Length=1361919 Score = 98.7 bits (108), Expect = 8e-16 Identities = 150/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 28549 TAAAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAAC 28608 ||||||||||||| || ||||| ||||| || || ||||| || || ||| ||||| Sbjct 1232339 TAAAAATGCAAATCTTCGTAAAGACATTGACTGGCAAAACAATCACTTTAGAAGTGGAAC 1232398 Query 28609 CTTCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAG 28668 | || || || | | || | || ||| ||| |||||||| || | || | Sbjct 1232399 CATCTGATACAATTGAAAATGTAAAAGCAAAGATCCAAGACAAAGAAGGTATTCCTCCCG 1232458 Query 28669 ATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATT 28728 |||| ||| | | |||||||| ||||||||| |||||||| || || | |||| Sbjct 1232459 ATCAGCAGCGTTTGATCTTTGCTGGCAAACAACTGGAAGATGGGCGCACATTGTCTGATT 1232518 Query 28729 ATAACATTCAAAAAGAATCTACTCTGCACATGGT 28762 | || || ||||||||||| || ||||| |||| Sbjct 1232519 ACAATATACAAAAAGAATCAACATTGCACTTGGT 1232552 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| || || ||||| || || ||||||||||| || ||| || ||||| Sbjct 1234236 ATGCAAATCTTCGTCAAAACTTTGACCGGTAAAACCATCACTTTGGAAGTCGAGCCTTCC 1234295 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | |||| || ||| || || || || | ||| ||| || Sbjct 1234296 GATACCATTGAAAACGTCAAAGCTAAGATCCAGGATAAGGAAGGTATTCCCCCAGACCAG 1234355 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||| | | ||||| || || ||||||||||||||| ||| | ||||||||||| Sbjct 1234356 CAGCGTTTGATCTTCGCTGGTAAACAATTGGAAGATGGCCGTACTCTCTCCGATTATAAC 1234415 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTA 28766 |||||||| || |||||||| || |||| ||| Sbjct 1234416 ATTCAAAAGGAGTCTACTCTCCATTTGGTCTTA 1234448 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||| ||||||||||| || || || ||| ||||||| || ||||| || Sbjct 1241334 AATGCAAATCTTTGTAAAAACTTTGACTGGCAAATCCATTACTTTGGAGGTAGAACCATC 1241393 Query 28613 AGAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATC 28671 ||| || | | | | || ||||||| || || ||||| || | || ||||| Sbjct 1241394 AGATACTATCGAAAACGTTAAAGCAAAAATTCAA-GATAAAGAAGGTATTCCTCCAGATC 1241452 Query 28672 AACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATA 28731 | ||| | | |||||||| ||||||||||| ||||| | ||| | | ||||| | Sbjct 1241453 AGCAGCGTTTGATCTTTGCTGGCAAACAATTAGAAGACGGTCGCACTCTTTCGGATTACA 1241512 Query 28732 ACATTCAAAAAGAATCTACTCTGCACATGGT 28762 | || || |||||||| ||| |||| |||| Sbjct 1241513 ATATACAGAAAGAATCAACTTTGCATTTGGT 1241543 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425396240190729