Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_020198.1 Length=36947 Score E Sequences producing significant alignments: (Bits) Value seq550 311 2e-80 >seq550 Length=29371 Score = 311 bits (344), Expect = 2e-80 Identities = 386/527 (73%), Gaps = 1/527 (0%) Strand=Plus/Minus Query 13981 CCCGGACGGCCAGCACGAAGCCATTGCGGCGCCGCGTGGTAATGCCAAGTCCACCCTGGT 14040 |||| | ||| |||| || |||||||| ||||||||||| | |||||||| || ||||| Sbjct 17434 CCCGAAAGGCGAGCAGGACGCCATTGCCGCGCCGCGTGGGGAGGCCAAGTCAACGCTGGT 17375 Query 14041 GAGCCAGATATTCGTGATCTGGTGCGTACTCACCGGCCGCAAGCATTACCCCCTGATCAT 14100 |||||| | || ||| | ||||| | | |||| |||||| || | ||| | | Sbjct 17374 CAGCCAGCTGTTTGTGCTGTGGTGTCTGGTGCGCGGCATCAAGCACTATGCGCTGGTAGT 17315 Query 14101 CATGGATGCCTTCGAACAGGCCGCCACGATGCTGGAAGCGATCAAGGCGGAGCTGGAGTT 14160 |||||| || |||| |||||| | ||||||| ||||| |||||||| |||||||| || Sbjct 17314 GATGGATTCCATCGACCAGGCCTACCCGATGCTCGAAGCCATCAAGGCCGAGCTGGAATT 17255 Query 14161 CAACCCGCGCCTGGCCATGGACTTCCCCCAGGGCGCCGGCAAGGGCCGCGTCTGGCAAGT 14220 ||||| || ||| ||||||||| | | | ||| |||||||||||||| | Sbjct 17254 TAACCCCCGGCTGCTGGCTGACTTCCCCGAAGCCTGCGGGGTAGGCCGCGTCTGGCAGAT 17195 Query 14221 CGGCACCATCGTTACGGCGAACGAT-GCCAAGGTCCAGGTCTTCGGCTCCGGCAAGCGGA 14279 ||||||||| | ||| |||||| |||||| ||||| ||| ||| || | Sbjct 17194 GGGCACCATCCTGACGCGCAACGATATGCAAGGTGCAGGTGGCCGGTAGCGGTAAAAAGC 17135 Query 14280 TGCGCGGTCTTCGACACGGCCCGCATCGTCCTGACCTGGTGATCGGCGACGACCTGGAGA 14339 ||||||| || || ||||| ||| | || |||||||||||||| ||||| | |||| Sbjct 17134 TGCGCGGCCTGCGCCACGGGCCGTACCGCCCTGACCTGGTGATACTGGACGATATTGAGA 17075 Query 14340 ACGACGAGAACGTCCGCAGCCCGGAGCAGCGCGACAAGCTGGAAAACTGGCTGAAGAAGA 14399 |||||||| | || |||| |||||| ||||||||||| ||||||| |||||||| || | Sbjct 17074 ACGACGAGCAGGTGCGCAACCCGGACCAGCGCGACAAACTGGAAAGCTGGCTGAGAAAAA 17015 Query 14400 CCGTTCTGTCCCTCGGCTCGGCCGACGACACCATGGACGTCATCATCATCGGCACCATCC 14459 |||| ||| | || ||| || | || | | || || || ||||||||||||| Sbjct 17014 CCGTGCTGCCGCTGGGCGGTGCGGGCGCAAAACTCGATGTGGTCTATATCGGCACCATCC 16955 Query 14460 TTCACTACGACTCGGTCCTGTCGCGCCTGCTGAAAAACCCGCTGTGG 14506 | || |||||||||||| | || ||| ||||| ||||| ||||| Sbjct 16954 TGCATTACGACTCGGTCTTATCACGCACCCTGAATAACCCATTGTGG 16908 Score = 306 bits (338), Expect = 9e-79 Identities = 421/584 (72%), Gaps = 16/584 (3%) Strand=Plus/Minus Query 14705 CGTGCCCGCGATGGGCACTCGGCGTTCGACTCGGAACAGCAGAACGACCCTGTCCAGGGC 14764 || ||||| || || ||| | | || || | || | ||||| ||||| ||| || Sbjct 16718 CGCGCCCGTGACGGTCACGCCACCTTTGATGCCGAGTACCAGAATGACCCGGTCAGCGGT 16659 Query 14765 GAAAACGCCCCCTTCGCC----GCCTGCATCACGTTCTGGGTCAACCGCCTGGCGCAATG 14820 ||| | || | || ||| |||||||| |||||||||||||| || | || Sbjct 16658 GAAGATGCGCTGTTTGCCCACTGCCTGCAT----TTCTGGGTCAACCGGCTTAACGAGTG 16603 Query 14821 GATGTTCTACGGCGCGTGTGACCCGTCCCTGGGTAAGCAAGGTTCCAGCCGCGACCC--C 14878 | | ||||| || || || ||||| ||| || ||| || ||||||| ||||| | Sbjct 16602 GGTCTTCTATGGGGCCTGCGACCCCAGCCTCGGCAAGGCCGGGGCCAGCCGTGACCCGTC 16543 Query 14879 AGCGCCATCCTGGTGGGTGGGTTCAACCGGGAGACAGGCGTCCTGGACGTGGTCGAGGCC 14938 ||||| | ||||| ||||| || || || | || ||||| ||||| ||||| || || Sbjct 16542 AGCGC--TGCTGGTCGGTGGCTTTAATCGCGCCACCGGCGTGCTGGATGTGGTGGAAGCG 16485 Query 14939 GCCATCCGCAAACGCCTGCCGGACAAGATCATCGAGGACGTCATCGCCATGCAGCGGGCC 14998 || ||||| || ||||||||| || ||| | | || || |||| || Sbjct 16484 CAGATACGCAAGCGGCTGCCGGACGCCATTATCAGCAATATTATTGCTCTGCAAAAGGAA 16425 Query 14999 TATCACTGCCTGGTGTGGGGCGTTGAGGCGGTCCAGTTCCAGGAGTTCCTGCGCACCGAG 15058 |||||||||||||| |||||| |||||||||| ||||| ||||||||||||||||||||| Sbjct 16424 TATCACTGCCTGGTCTGGGGCATTGAGGCGGTGCAGTTTCAGGAGTTCCTGCGCACCGAG 16365 Query 15059 CTGGTGAAGCGCTCGGCCAAGGCTGGCTGCCCAGTACCTGCCCGAGCGATCACGCCACAT 15118 ||| | |||||| |||| || ||| ||| || || || || || || | || ||| Sbjct 16364 CTGATTAAGCGCGCGGCTCAGCTGGGCCACCCGGTGCCGGCGCGGGCCATTATCCCCCAT 16305 Query 15119 GCCGACAAGCTACTGCGCATCGAAAGCCTCCAGCCGCACATGGCCAACGGCCTCATCCGT 15178 ||||||||||| |||| ||||| | ||| ||||| || |||| ||||| || ||||| Sbjct 16304 GCCGACAAGCTGTTGCGTATCGAGACCCTGCAGCCCCATATGGAAAACGGGCTTATCCGG 16245 Query 15179 CTGCATCCAAGCCAGACCGTCCTGGAACAACAGCTGCGGCA--CTTCCCGGCCGCAGACC 15236 ||||| | ||||||||| |||| ||| |||||||| || |||||| ||| |||| Sbjct 16244 CTGCACGCCAGCCAGACCACCCTGATACAGCAGCTGCGCCATTTTTCCCG--CGCCGACC 16187 Query 15237 ACGACGATGGCCCCGACGCCCTACACATGCTCTGGATGCTAGCC 15280 | ||||| ||||| ||||| || || |||||||||| | | ||| Sbjct 16186 ATGACGACGGCCCGGACGCGCTGCATATGCTCTGGACGTTGGCC 16143 Score = 113 bits (124), Expect = 1e-20 Identities = 163/228 (71%), Gaps = 4/228 (2%) Strand=Plus/Minus Query 17319 CCGCCTGGATACCATTTACCAGACCAACATGCAGTCGGCGTATATGGCAGGGCGTTAC-- 17376 ||| ||||| || |||| | ||||| | ||||| || |||||||| ||||| || Sbjct 14245 CCGGCTGGAGACGATTTTTCGCACCAATACCCAGTCTGCCTATATGGCCGGGCGCTATCA 14186 Query 17377 GCGGCTGCCTACGAGGCCAGGGAAACCCACCCTTACTGGATGTATGTAGCGGTGATGGAC 17436 |||||||| |||| | || | || |||||| |||||| |||||||||||| Sbjct 14185 GCGGCTGCG--CGAGAACGTCGACCAGCGGCCCTACTGGCAGTATGTGGCGGTGATGGAC 14128 Query 17437 GGCGTTACCCGACCCAGCCATGCCGCCCTGCATGGGAAGGTCTTCCGCTGGGACGATCCA 17496 || ||||| |||||||||||||| |||||||| ||| ||||| | |||||| | Sbjct 14127 AGCCACACCCGCCCCAGCCATGCCGCGCTGCATGGCCGGGTGTTCCGTTATGACGATGCG 14068 Query 17497 ATCTGGCAGCACATCACCCCGCCCAATGGCTACAACTGCCGGTGCCGG 17544 |||| | | | || || || |||||||||||||| |||||| Sbjct 14067 GGCTGGGATACCCTGTTTCCCCCGAACGGCTACAACTGCCGCTGCCGG 14020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 118106484403158