Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_020203.1 Length=37095 Score E Sequences producing significant alignments: (Bits) Value seq550 587 2e-163 >seq550 Length=29371 Score = 587 bits (650), Expect = 2e-163 Identities = 927/1312 (71%), Gaps = 32/1312 (2%) Strand=Plus/Minus Query 13830 CCCGGACGGCCAGCACGAAGCCATTGCGGCGCCGCGTGGTAATGCCAAGTCCACCCTGGT 13889 |||| | ||| |||| || |||||||| ||||||||||| | |||||||| || ||||| Sbjct 17434 CCCGAAAGGCGAGCAGGACGCCATTGCCGCGCCGCGTGGGGAGGCCAAGTCAACGCTGGT 17375 Query 13890 GAGCCAGATATTCGTGATCTGGTGCGTACTCACCGGCCGCAAGCATTACCCCCTGATCAT 13949 |||||| | || ||| | ||||| | | |||| |||||| || | ||| | | Sbjct 17374 CAGCCAGCTGTTTGTGCTGTGGTGTCTGGTGCGCGGCATCAAGCACTATGCGCTGGTAGT 17315 Query 13950 CATGGATGCCTTCGAACAGGCCGCCACGATGTTGGAGGCGATCAAGGCGGAGCTGGAGTT 14009 |||||| || |||| |||||| | ||||| | || || |||||||| |||||||| || Sbjct 17314 GATGGATTCCATCGACCAGGCCTACCCGATGCTCGAAGCCATCAAGGCCGAGCTGGAATT 17255 Query 14010 CAACCCGCGCCTGGCCATGGACTTCCCCCAGGGCGCCGGCAAGGGCCGCGTCTGGCAGGT 14069 ||||| || ||| ||||||||| | | | ||| ||||||||||||||| | Sbjct 17254 TAACCCCCGGCTGCTGGCTGACTTCCCCGAAGCCTGCGGGGTAGGCCGCGTCTGGCAGAT 17195 Query 14070 CGGCACCATCGTTACGGCGAACGATGC-CAAGGTCCAGGTCTTCGGCTCCGGCAAGCGGA 14128 ||||||||| | ||| |||||| |||||| ||||| ||| ||| || | Sbjct 17194 GGGCACCATCCTGACGCGCAACGATATGCAAGGTGCAGGTGGCCGGTAGCGGTAAAAAGC 17135 Query 14129 TGCGCGGCCTTCGACACGGCCCGCACCGTCCTGACCTGGTGATCGGCGACGACCTGGAGA 14188 |||||||||| || ||||| ||| |||| |||||||||||||| ||||| | |||| Sbjct 17134 TGCGCGGCCTGCGCCACGGGCCGTACCGCCCTGACCTGGTGATACTGGACGATATTGAGA 17075 Query 14189 ACGACGAGAACGTCCGCAGCCCGGAGCAGCGCGACAAGCTGGAAAACTGGCTGAAGAAAA 14248 |||||||| | || |||| |||||| ||||||||||| ||||||| |||||||| |||| Sbjct 17074 ACGACGAGCAGGTGCGCAACCCGGACCAGCGCGACAAACTGGAAAGCTGGCTGAGAAAAA 17015 Query 14249 CCGTTCTGTCCCTCGGCTCGGCCGACGACACCATGGACGTGATCATCATCGGGACCATCC 14308 |||| ||| | || ||| || | || | | || ||| || ||||| ||||||| Sbjct 17014 CCGTGCTGCCGCTGGGCGGTGCGGGCGCAAAACTCGATGTGGTCTATATCGGCACCATCC 16955 Query 14309 TTCACTACGACTCGGTCCTGTCGCGCCTGCTGAAAAACCCGCTGTGG-AAGCGGCGCAAG 14367 | || |||||||||||| | || ||| ||||| ||||| ||||| | ||| | | Sbjct 16954 TGCATTACGACTCGGTCTTATCACGCACCCTGAATAACCCATTGTGGCGACAGGCAC-GG 16896 Query 14368 TTCAAGGCGATCATCGAATGGCCGCACCGCATGGACCTGTGGGAGAAGTGGGAGGAACTT 14427 | ||||| | | | |||||| | || |||||||||| |||||| | | Sbjct 16895 CTTAAGGCCCTGCGCCAGTGGCCGGTGAACCTGTCGCTGTGGGAGACCTGGGAGCAGCGC 16836 Query 14428 CTGCTCAACTCCGACGACGAGGGCGCCGCCGCACTGGCCTTCT--ACCAGGAACGCGTCG 14485 ||| || ||| | |||| || || |||| ||| || | ||| || || || || Sbjct 16835 TTGCGTAA---CGAGGGGGAGGACG-CGGCGCA--GGCATTTTACACCCGGCAC-CG-CG 16784 Query 14486 CCGCCATGGAGGACGGCGCGATCATCTGCTGGCCGGATGGGCAGCCCCTCTACAAACTCA 14545 | ||||| || |||||| ||| |||| | | | | || || | || | Sbjct 16783 TGGAAATGGAAGATGGCGCGGAGGTCTCCTGGTCCGCCCGCCCGCTGCT---GACCCTGA 16727 Query 14546 TGGTGAAACGTGCCCGCGATGGGCACTCGGCGTTCGACTCGGAACAGCAGAACGACCCTG 14605 || | || ||||| || || ||| | | || || | || | ||||| ||||| | Sbjct 16726 TGCATATCCGCGCCCGTGACGGTCACGCCACCTTTGATGCCGAGTACCAGAATGACCCGG 16667 Query 14606 TCCAGGGCGAAAACGCCCCCTTCGCC----GCCTGCATCACGTTCTGGGTCAACCGCCTG 14661 || || ||| | || | || ||| |||||||| |||||||||||||| || Sbjct 16666 TCAGCGGTGAAGATGCGCTGTTTGCCCACTGCCTGCAT----TTCTGGGTCAACCGGCTT 16611 Query 14662 GCGCAGTGGATGTTCTACGGCGCGTGCGACCCGTCCCTGGGTAAGCAAGGCTCCAGTCGC 14721 ||||| | ||||| || || |||||||| ||| || ||| || |||| || Sbjct 16610 AACGAGTGGGTCTTCTATGGGGCCTGCGACCCCAGCCTCGGCAAGGCCGGGGCCAGCCGT 16551 Query 14722 GACCC--CAGCGCCATCCTGGTGGGTGGGTTCAATCGGGAAACAGGCGTCCTGGACGTGG 14779 ||||| |||||| | ||||| ||||| || ||||| | || ||||| ||||| |||| Sbjct 16550 GACCCGTCAGCGC--TGCTGGTCGGTGGCTTTAATCGCGCCACCGGCGTGCTGGATGTGG 16493 Query 14780 TCGAGGCTGCCATCCGCAAGCGCCTGCCGGACAAGATCATCGAGGACATCATCACCATGC 14839 | || || || |||||||| ||||||||| || ||| | || || | ||| Sbjct 16492 TGGAAGCGCAGATACGCAAGCGGCTGCCGGACGCCATTATCAGCAATATTATTGCTCTGC 16433 Query 14840 AGCGGGCCTATCACTGCCTGGTGTGGGGCGTTGAGGCGGTCCAGTTCCAGGAGTTTCTGC 14899 | || |||||||||||||| |||||| |||||||||| ||||| |||||||| |||| Sbjct 16432 AAAAGGAATATCACTGCCTGGTCTGGGGCATTGAGGCGGTGCAGTTTCAGGAGTTCCTGC 16373 Query 14900 GCACCGAGCTGGTGAAGCGCTCGGCCAAGGCTGGCTGCCCAGTACCTGCCCGAGCGATCA 14959 ||||||||||| | |||||| |||| || ||| ||| || || || || || || | Sbjct 16372 GCACCGAGCTGATTAAGCGCGCGGCTCAGCTGGGCCACCCGGTGCCGGCGCGGGCCATTA 16313 Query 14960 CGCCACACGCCGACAAGCTACTGCGCATCGAAAGCCTCCAGCCGCACATGGCCAACGGCC 15019 || || ||||||||||| |||| ||||| | ||| ||||| || |||| ||||| | Sbjct 16312 TCCCCCATGCCGACAAGCTGTTGCGTATCGAGACCCTGCAGCCCCATATGGAAAACGGGC 16253 Query 15020 TAATCCGTCTGCATCCAAGCCAGACCGTCCTGGAACAACAGCTGCGGCA--CTTCCCGGC 15077 | ||||| ||||| | ||||||||| |||| ||| |||||||| || |||||| Sbjct 16252 TTATCCGGCTGCACGCCAGCCAGACCACCCTGATACAGCAGCTGCGCCATTTTTCCCG-- 16195 Query 15078 CGCAGACCACGACGATGGCCCCGACGCCCTGCACATGCTCTGGATGCTAGCC 15129 ||| ||||| ||||| ||||| ||||| ||||| |||||||||| | | ||| Sbjct 16194 CGCCGACCATGACGACGGCCCGGACGCGCTGCATATGCTCTGGACGTTGGCC 16143 Score = 104 bits (114), Expect = 6e-18 Identities = 161/228 (71%), Gaps = 4/228 (2%) Strand=Plus/Minus Query 17168 CCGCCTGGATACCATCTACCAGACCAACATGCAGTCGGCCTACATGGCAGGGCGCTAC-- 17225 ||| ||||| || || | | ||||| | ||||| ||||| ||||| |||||||| Sbjct 14245 CCGGCTGGAGACGATTTTTCGCACCAATACCCAGTCTGCCTATATGGCCGGGCGCTATCA 14186 Query 17226 GCGGCCGCCTACGAAGCCAGGGAAACCCACCCTTACTGGATGTATGTGGCGGTGATGGAT 17285 ||||| || ||| | || | || |||||| |||||||||||||||||| Sbjct 14185 GCGGCTGCGCGAGAA--CGTCGACCAGCGGCCCTACTGGCAGTATGTGGCGGTGATGGAC 14128 Query 17286 GGCGTTACCCGGCCCAGCCATGCCGCCCTGCATGGGAAAGTGTTCAGGTGGGACGATCCG 17345 || ||||| |||||||||||||| |||||||| |||||| | | |||||| || Sbjct 14127 AGCCACACCCGCCCCAGCCATGCCGCGCTGCATGGCCGGGTGTTCCGTTATGACGATGCG 14068 Query 17346 ATCTGGCAGCACATCACCCCGCCCAATGGCTACAACTGCCGGTGCCGG 17393 |||| | | | || || || |||||||||||||| |||||| Sbjct 14067 GGCTGGGATACCCTGTTTCCCCCGAACGGCTACAACTGCCGCTGCCGG 14020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 118580075117934