Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq316 123 3e-23 >seq316 Length=231415 Score = 123 bits (136), Expect = 3e-23 Identities = 455/695 (65%), Gaps = 16/695 (2%) Strand=Plus/Plus Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242 ||||||||||| || | ||| || || ||||| ||||| || || || ||||| ||||| Sbjct 111069 ACACCAATAGGTCCCATGCCGGGTCCGCCACCGCCATGAGGTATGCAAAATGTTTTATGC 111128 Query 138243 AAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCTACCTGTGCA 138302 ||||| | ||| | ||||| ||||| || | || || |||||| |||||| Sbjct 111129 AAATTCAAGTGAGAGACATCGCTTCCATAATCTCCAGGACGGCATAAACCTACTTGTGCA 111188 Query 138303 TTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACGATCTTACATATC 138362 || | ||| ||||| || || || || || || || | | ||| | | | || ||| Sbjct 111189 TTCATATTGGCACCGTCCAGGTACACTTGTCCGCCGTGGCGATGTATTAGATCGCAAATC 111248 Query 138363 TGTCTGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAATCATAATACATGAG 138422 | | | || || |||||| || || ||| || |||||||||| ||| | ||| ||| Sbjct 111249 TCTGTAATTGTTTCTTCAAAAACGCCCATAGTTGAGGGATATGTAACCATTACACAGGAG 111308 Query 138423 AGTTCAAATGTAT--TCATGATTGCTTTCTTCTCTAGATCTTTGATGTCTATGTTGCCAT 138480 || | | || ||| || |||||| | ||||| || ||||| | |||| Sbjct 111309 AGATTGCGCGCATGCTCA-GA-TGCTTTATCGCGTAGATGCGCCATATCTATACTTCCAT 111366 Query 138481 CA-TCATCACACTTGACACCTACAACTTTCATTCCTGCCATGACTGCACTAGCAGGATTA 138539 || | | || | | | | |||||||| || ||||| ||| ||| ||||| Sbjct 111367 CAGAAAGTAAACGT-ATGGGTTCGACTTTCATGCCAGCCATTTGAGCAGAAGCGGGATTT 111425 Query 138540 GTTCCATGTGCTGACTCTGGTATCAGACATACATTTCTTTTATCATC-TCCTGATCCTTG 138598 || |||||||| || || || | ||||||||||| | | || | ||| | | Sbjct 111426 GTACCATGTGCAGAAATCGGAATTAAACATACATTTCGGTGTCCTTCATTACGATGC-TC 111484 Query 138599 ATGATATGCT-TGGATTGCTAACAGTCCTGCATACTCACCCTGTGATCCTGCGTTAGGTT 138657 |||||| ||| | || ||| || || || || ||||| || | || | || |||| Sbjct 111485 ATGATA-GCTGCGAATCGCTCTTAGGCCAGCGTATTCACCTTGAGCCCCAGAATTCGGTT 111543 Query 138658 GTAATGATATAGAATCAAAACCTGTGATATCACATA-ACCATTTCTGTAAGTCATCTATT 138716 | |||||||| |||| |||| ||||| ||||| | | || | || ||| || | | Sbjct 111544 GAAATGATATTTTATCATAACCAGTGATTTCACAAAGATCA-TGCTCTAATTCCTGAAAC 111602 Query 138717 ATCTTTTGATAACCCATGGTCTGTATCATAGGTGTATGTGGATGCACGTTGGCAAATT-- 138774 || |||||||| | | ||| | |||| | ||||| | | | ||| | Sbjct 111603 ATTAAATGATAACCTTTAGCTTGTTCAACGGGTGCAAACGGATGAATTTCAGTAAAATGA 111662 Query 138775 CTTCCCATGACACAGGCATCAGTTCTGCTGCTGCATTTAGTTTCATTGTGCAACTACCAA 138834 | || ||| ||||||| ||| | || ||||| |||||||||||||| || | Sbjct 111663 CGAAAACTG-CAC-GGCATCATTTCCGTTGTAGCATTCAGTTTCATTGTGCATGATCCTA 111720 Query 138835 GTGGAACCATACCATTTACTAATGAGAAATCTTTA 138869 ||| | ||| || |||||| || | ||||||| Sbjct 111721 ATGGTATCATTGAATGTACTAAAGATATATCTTTA 111755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578986450920520