Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq148 109 7e-19 >seq148 Length=545759 Score = 109 bits (120), Expect = 7e-19 Identities = 575/904 (64%), Gaps = 23/904 (3%) Strand=Plus/Plus Query 75689 GATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGGTGGT 75748 ||| | |||| |||| ||||| || || || |||||||| | || ||||| | ||| Sbjct 220384 GATTTGTTTTATGCCCTATGGATACCGGATCTGTTCATGAAAAGAGTAGAGGATGATGGC 220443 Query 75749 CAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTGGGTGAGGAG 75808 | |||||||| | ||||| | || || ||| | | || | ||| || || Sbjct 220444 GATTGGTCTCTAATGTGTCCTCATAAATGTCCTGGTTTGTGTGAAGTTTGGGGAGATGAA 220503 Query 75809 TTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCGACTGTACCAGCC 75868 ||||| | |||| || || ||| ||||| | ||| ||| || | ||| Sbjct 220504 TTTGACAAATTATACATGAAATACGAAAGTGAGGGCAAAGCGAATCAAACAATTAAAGCT 220563 Query 75869 GCCGATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATGCTT 75928 | | ||| || || ||| || || ||||||||||||| || ||||||||| Sbjct 220564 CGTGCCTTGTGGTTTGCAATATGCAAGTCTCAAGCGGAGACTGGAACTCCTTATATGCTT 220623 Query 75929 TACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCA 75988 ||||| |||||||| || |||||||| ||| |||| | || || || || | || Sbjct 220624 TACAAAGATGCTTGCAATCGCAAGAGTAATCAACAGAACATTGGTACTAT-AAAATCTAG 220682 Query 75989 AATCTT-TGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGCAATTT 76047 | ||| || || |||||| | || ||||| ||||| | || |||||||| | Sbjct 220683 TAACTTGTGTACAGAAATTGTCGAATACACTTCGGCTGATGAAATTGCAGTTTGCAACCT 220742 Query 76048 GGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGA-GACTCGCACTTTTGATTATGAAA 76106 ||| || || || | || |||| ||| | | | | | |||| | | | Sbjct 220743 GGCCTCGATTGCATT----AAACATGTTCGTGACTACGGATAAAAAATACGATTTTAACA 220798 Query 76107 AACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATTGACAGAAATT 76166 || | | ||| | || ||| || | || | || || ||| | | ||||||| || | Sbjct 220799 AATTGAAAGAAGTTACGAAGCTTATAACAAGGAACCTCAACAAAATAATTGACATTAACT 220858 Query 76167 TTTATCCCGTTG-AGACTGCGCGAAAG-TCTAATATGCGACACAGACCTATTGGTTTGGG 76224 |||| |||||| | || | |||| |||||| |||| ||| | || |||||| | || Sbjct 220859 ATTAT-CCGTTGCCGGAAGC-CAAAAGATCTAATTTGCGTCACCGTCCAATTGGTATAGG 220916 Query 76225 TGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGCATTTGATTCAGATGAAGC 76284 || ||||| | || || | ||| ||||| || || ||| ||| || | || Sbjct 220917 CGTCCAAGGATTTGCTGACGCATTAATTTTAATGCGTTATCCATATGAAAGCGAAAATGC 220976 Query 76285 ----CAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCCTGGAGGCGA 76340 | | | || || | || || |||||||| ||| ||| | | ||||| | Sbjct 220977 TGTTCTATTAAATCAA----CAAATTTTCGAAACCATATATTACGGTGCTTTAGAGGCTA 221032 Query 76341 GTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCTCCCGCGTCCC 76400 | ||||| ||||| || | || | || || |||| ||| ||| || | | Sbjct 221033 GCTGTGAGTTGGCCAAACAATATGGCCCGTACGAAACATATGAAGGTAGCCCAGTTAGCA 221092 Query 76401 AAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAAGCTCAAC--TACGACTGGGA 76458 |||| | ||||| | ||| |||| |||| ||| || | || | | | || |||| Sbjct 221093 AAGGTATTCTTCAATATGACATGT-GGAACAAGAAGCCTA-CTGATCTTTGGGATTGGGC 221150 Query 76459 TGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAAT 76518 | ||| || || |||||| | | ||| | ||||| | | ||| |||| ||||| Sbjct 221151 GGCTCTTAAAGATGACATCAAAAATCATGGTGTGCGTAATTCTTTGTTGGTGGCCCCAAT 221210 Query 76519 GCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCATACACAAC 76578 ||| || || || || || ||||| | || || || |||| |||||| || || || | Sbjct 221211 GCCTACGGCATCTACTGCTCAAATTCTTGGCAACAACGAATCCTTTGAGCCGTATACTTC 221270 Query 76579 AAAC 76582 |||| Sbjct 221271 AAAC 221274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596557288294880