Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq1 165 1e-35 seq308 150 3e-31 seq53 136 7e-27 seq13 89.7 9e-13 >seq1 Length=10097680 Score = 165 bits (182), Expect = 1e-35 Identities = 177/234 (76%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 193130 TATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTC 193189 ||||||||||| ||| |||||||||| ||||||||| | ||||| ||||| || || Sbjct 7547619 TATACCACCTCGCAAACGAAGTACCAAATGCAATGTCGATTCTTTCTGTATATTGTAATC 7547560 Query 193190 GGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGG 193249 || || || | ||| || |||||||| || || || || || | || ||||| || Sbjct 7547559 AGACAAAGTCCGCCCATCTTCCAATTGTTTGCCAGCGAAGATCAAACGTTGCTGATCTGG 7547500 Query 193250 AGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTC 193309 ||| || || ||||| || || ||||||| || | |||| |||||| ||||||| ||| Sbjct 7547499 AGGAATGCCCTCTTTGTCCTGAATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCTC 7547440 Query 193310 AACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 |||||| | ||| || ||||| || || || ||||| || || ||||||||||| Sbjct 7547439 AACTTCCAAAGTAATTGTTTTGCCAGTAAGAGTTTTAACGAAAATTTGCATTTT 7547386 >seq308 Length=190705 Score = 150 bits (166), Expect = 3e-31 Identities = 172/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192 |||||||| ||| || | || ||||| || || | ||||| ||||||||| || || Sbjct 86621 ACCACCTCGCAAACGCAACACAAGATGTAACGTGGATTCTTTTTGAATATTATAATCCGA 86680 Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252 ||| || | | ||| || ||||||||||| || || || |||| ||||| || || || Sbjct 86681 TAATGTGCGACCATCTTCCAATTGTTTTCCAGCGAAGATCAATCGTTGTTGGTCGGGTGG 86740 Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312 ||||| ||||| || || || |||| ||| | |||| ||||||||| || | ||| || Sbjct 86741 AATTCCCTCTTTGTCCTGAATCTTGGCTTTCACATTTTCAATAGTATCAGAGGGCTCGAC 86800 Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || ||||| || || || || || || ||||||||||| || ||||| || Sbjct 86801 CTCAAGAGTAATGGTCTTGCCCGTAAGGGTTTTTACAAAAATCTGCATATT 86851 >seq53 Length=1361919 Score = 136 bits (150), Expect = 7e-27 Identities = 174/240 (73%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| || ||||| | || || || |||| |||||||| | ||||| ||||| Sbjct 1232580 AATTTGCATGCCACCACGCAGACGTAGAACCAAGTGCAATGTTGATTCTTTTTGTATATT 1232521 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 || || || || || | ||| || | |||||| || ||||| || || | ||| || Sbjct 1232520 GTAATCAGACAATGTGCGCCCATCTTCCAGTTGTTTGCCAGCAAAGATCAAACGCTGCTG 1232461 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||| ||||| || |||||||| ||||| || || | ||||| |||| ||| ||||| || Sbjct 1232460 ATCGGGAGGAATACCTTCTTTGTCTTGGATCTTTGCTTTTACATTTTCAATTGTATCAGA 1232401 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 | || ||||||| ||| || ||||| || || | || ||||| || ||||||||||| Sbjct 1232400 TGGTTCCACTTCTAAAGTGATTGTTTTGCCAGTCAATGTCTTTACGAAGATTTGCATTTT 1232341 Score = 134 bits (148), Expect = 2e-26 Identities = 172/237 (73%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| ||||| || | ||| || | |||| |||||| |||| || || ||||| Sbjct 1232808 AATTTGCATACCGCCACGCAAACGTAAGACCAAATGCAACGTAGATTCCTTTTGTATATT 1232749 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 || || || || || | || ||||| ||||| || || || ||||| | |||||| Sbjct 1232748 GTAATCAGACAATGTGCGCCCGTCTTCTAACTGTTTACCAGCGAAGATTAAACGCTGTTG 1232689 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||| || || |||||||| |||||||| || || | || | ||| |||||||||||| Sbjct 1232688 ATCTGGTGGGATTCCTTCCTTATCTTGAATCTTAGCCTTAACATTCTCAATAGTATCGGA 1232629 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || |||||| || | || |||||||| || || | || || ||||| |||||||| Sbjct 1232628 AGGCTCAACCTCCAAGGTGATAGTTTTGCCAGTCAATGTCTTGACAAAAATTTGCAT 1232572 Score = 129 bits (142), Expect = 1e-24 Identities = 173/241 (72%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| |||||||| | ||| || | |||| |||||| |||| || || ||||| Sbjct 1239769 AATTTGCATACCACCACGCAAACGCAAGACCAAATGCAACGTAGATTCCTTTTGTATATT 1239710 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 || || || || || | || |||| ||||| || || || ||||| | ||||| Sbjct 1239709 GTAATCAGACAATGTGCGCCCGTCTTCTAGCTGTTTACCAGCGAATATTAAACGTTGTTG 1239650 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||| || || |||||||| |||||||| || || | ||| | ||| |||||||||||| Sbjct 1239649 ATCTGGTGGGATTCCTTCCTTATCTTGAATCTTAGCTTTAACATTCTCAATAGTATCGGA 1239590 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || |||||| || | || | |||||| || || | || || || || || |||||||| Sbjct 1239589 AGGCTCAACCTCCAAGGTGACAGTTTTCCCAGTCAATGTCTTCACGAAGATCTGCATTTT 1239530 Query 193364 A 193364 | Sbjct 1239529 A 1239529 Score = 125 bits (138), Expect = 1e-23 Identities = 170/237 (72%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || ||||| | | || || |||| |||||| || | ||||| ||||| Sbjct 1241570 ATTTGCATTCCACCGCGGAGACGCAGCACCAAATGCAAAGTTGATTCTTTCTGTATATTG 1241511 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || || || | || | | || ||||||||||| || ||||| || || | ||| ||| Sbjct 1241510 TAATCCGAAAGAGTGCGACCGTCTTCTAATTGTTTGCCAGCAAAGATCAAACGCTGCTGA 1241451 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || ||||| || |||||||||||||| ||||| | ||| | ||| |||||||| || Sbjct 1241450 TCTGGAGGAATACCTTCTTTATCTTGAATTTTTGCTTTAACGTTTTCGATAGTATCTGAT 1241391 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 | || || || | ||| || | ||| || || | ||||||||||| ||||||||| Sbjct 1241390 GGTTCTACCTCCAAAGTAATGGATTTGCCAGTCAAAGTTTTTACAAAGATTTGCATT 1241334 Score = 120 bits (132), Expect = 5e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 |||| ||||||||||| || || | ||| || || || | || | || ||| Sbjct 1240197 ACCAAATGCAATGTAGATTCCTTTTGTACATTGTAATCCGAAAGAGTGCGGCCGTCTTCT 1240138 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 |||||||| || |||||||| || | ||| ||||| ||||| || |||||||||||||| Sbjct 1240137 AATTGTTTGCCAGCAAAAATCAAACGCTGCTGATCTGGAGGAATACCTTCTTTATCTTGA 1240078 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 ||||| | ||| | ||| |||||||| || | || ||||| | ||| || ||||| Sbjct 1240077 ATTTTTGCTTTAACGTTTTCGATAGTATCCGATGGTTCTACTTCCAAAGTAATGGTTTTT 1240018 Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || | ||||| ||||| || ||||| Sbjct 1240017 CCAGTCAAAGTTTTAACAAAGATCTGCAT 1239989 Score = 109 bits (120), Expect = 1e-18 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 |||| |||||| || | ||||| ||||| ||||| || | || | | || || Sbjct 1240425 ACCAAATGCAAAGTTGATTCTTTCTGTATATTGTAGTCCGAGAGAGTACGACCGTCTTCC 1240366 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 | ||||| || ||||| || || | ||| || || ||||| || |||||||||||||| Sbjct 1240365 AGCTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCTTTATCTTGA 1240306 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 ||||| | || | ||| |||||||| || | || || || | ||| || ||||| Sbjct 1240305 ATTTTTGCCTTAACGTTTTCGATAGTATCCGATGGTTCTACCTCCAAAGTAATGGTTTTG 1240246 Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || | ||||| ||||||||||||||| Sbjct 1240245 CCAGTCAAAGTTTTAACAAATATTTGCATT 1240216 >seq13 Length=3303135 Score = 89.7 bits (98), Expect = 9e-13 Identities = 120/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 22482 ACAGGATATATAGATGGACTATCTAAAGGATTGCACGGATTTCATGTGCATGAATATGGC 22541 || ||| | ||| ||||| |||||||||||||||| || |||||||| ||| ||| ||| Sbjct 2972596 ACCGGAGAGATAAATGGATTATCTAAAGGATTGCATGGTTTTCATGTCCATCAATTTGGA 2972655 Query 22542 GATTTGAGCAACGGATGTACATCAGCTGGAGAGCATTTTAATCCATTTAATAAAAATCAC 22601 || | ||| ||||| || || ||||| |||||| ||||| | |||||| | || Sbjct 2972656 GACAATACCAATGGATGCACTTCCGCTGGTCCGCATTTCAATCCTTGCAATAAAGAGCAT 2972715 Query 22602 GGAAATATTACGGATTACGAAAGGCATTTAGGGGATTTGGGAAATAT 22648 || ||| ||| | || | ||| | || ||||| || ||||| Sbjct 2972716 GGTGCACCTACTGATGATGAGCGCCATATCGGCGATTTAGGCAATAT 2972762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899635833382320