Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq184 244 2e-59 seq53 132 7e-26 seq1 113 7e-20 seq308 104 3e-17 seq459 87.8 3e-12 >seq184 Length=525875 Score = 244 bits (270), Expect = 2e-59 Identities = 492/723 (68%), Gaps = 7/723 (1%) Strand=Plus/Minus Query 17972 AATTCGTATAATAATCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTC 18031 ||||| ||| || | ||| |||||| |||| | ||||| |||| || |||| Sbjct 28983 AATTCTAATAGCAAACGATCCGCTACATATTCTATGTATTGACACATACTTTCATTATTC 28924 Query 18032 ATACCTAGTAGTCTGAAAGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGAC 18091 ||||| | || ||| |||||||| || | | |||||| || || || | ||| | Sbjct 28923 ATACCGATTAAATTGACTGGTAGAGCTTCTGTCAGAAATTCCTTTTCAATTTTAACGGCA 28864 Query 18092 TCTTTTATTATGTTTATTACCCTAGATTTTGGCAATTTATTAATTATGTGATTATAATAT 18151 || ||||||| | | || | ||| | | ||| | || | | ||| || || Sbjct 28863 TCGGTTATTATTTCCAATATGCGTTCTTTGGTCGGTTTTTGTATCAAATATTTA-AACAT 28805 Query 18152 AATAAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAAC 18211 | |||| |||||| || |||||||||||||| | ||||||||||| ||| ||| Sbjct 28804 TA-AAAC-CGCAAATTCGCAATGTAAACCTTCATCGCGTGATATTAATTCATTAGAAAAT 28747 Query 18212 GTTAACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAA 18271 |||| || |||||||| || | ||| || |||||||||||||| || ||||| | | | Sbjct 28746 GTTAGACCCGGCATTATTCCACGTTTCTTAAGCCAAAATATCGAAGCAAAACTTCCACTA 28687 Query 18272 AAGAATATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATT- 18330 ||||||||||| || ||| || || ||||| | | ||| ||||| | | Sbjct 28686 AAGAATATACCTTCGACGGCAGCAAAAGCTATGACACGCTCACCAAAATTCGCCGAACGC 28627 Query 18331 GCTCAGTATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTAT 18390 | | | |||||| | |||||||| ||| | |||| || |||| || Sbjct 28626 GATGA-TATCCAAGCTAAAGCCCATTCCGCTTTCTTTTTAACTAACGGCATCGTCTCAAT 28568 Query 18391 AGCATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGA 18450 |||||||| | || ||| |||||| | |||| ||| | || || || | ||| Sbjct 28567 GGCATTAAAAAGATAATCGCGTTCTTTCGGATCTGCGATAAATGTTTCAATAAGTAAACT 28508 Query 18451 ATACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTC 18510 ||||||||| || |||| |||| || ||||| ||||||| |||||| | | ||| || Sbjct 28507 ATACATTTCCGAGTGTACATTTTCGATGGCTATTTGAAAACCATAAAAGCAACGAGCTTC 28448 Query 18511 GGGATATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGC 18570 || ||||| || | |||| | ||| || |||||||||||||| || ||||||| Sbjct 28447 GGTTACTTGAACTTCTTGAGAAAAACGTTCCACTAAATTCTCATTAACAATGCCGTCAGA 28388 Query 18571 AGATGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTT 18630 | || ||||| |||||||||| | ||| ||||| ||||| ||| | | || | | Sbjct 28387 TGCCGCAAAAAAAGCCAAAACATGTGAAATAAAATGACGTTCATCATCAGTTA-ATCGCT 28329 Query 18631 CC-ATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGG 18689 || | | ||| | |||| | |||||||| ||||||| ||||||||||| | ||| | Sbjct 28328 CCCAATGATCAAGATCTGCAGCGAGATCAACCTCTTCCGCCGTCCAAAAAGAAGCTTCAG 28269 Query 18690 CCT 18692 ||| Sbjct 28268 CCT 28266 >seq53 Length=1361919 Score = 132 bits (146), Expect = 7e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||||||| ||||||| |||||||| ||||| ||||| || || || ||| || Sbjct 1240216 AATGCAAATATTTGTTAAAACTTTGACTGGCAAAACCATTACTTTGGAGGTAGAACCATC 1240275 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 |||| ||| |||||| || ||||| |||||||||||||| || |||||||| || Sbjct 1240276 GGATACTATCGAAAACGTTAAGGCAAAAATTCAAGATAAAGAAGGTATTCCTCCAGACCA 1240335 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || | ||||| | ||| || || ||||| ||||| | ||| | || || || || Sbjct 1240336 GCAGCGTTTGATCTTTGCTGGCAAACAGCTGGAAGACGGTCGTACTCTCTCGGACTACAA 1240395 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTGTT 156034 |||| ||||| | || | ||||| ||||| Sbjct 1240396 TATACAGAAAGAATCAACTTTGCATTTGGTGTT 1240428 Score = 131 bits (144), Expect = 2e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| ||||||| |||||||||||||| ||||| || ||||| ||| || Sbjct 1239989 ATGCAGATCTTTGTTAAAACTTTGACTGGAAAAACCATTACTTTGGAAGTAGAACCATCG 1240048 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| |||||| ||| ||||| |||||||||||||| || |||||||| || Sbjct 1240049 GATACTATCGAAAACGTTAAAGCAAAAATTCAAGATAAAGAAGGTATTCCTCCAGATCAG 1240108 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | ||||||| ||| || || || | ||||| | | ||| | || ||||| ||| Sbjct 1240109 CAGCGTTTGATTTTTGCTGGCAAACAATTAGAAGACGGCCGCACTCTTTCGGATTACAAT 1240168 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTT 156034 || || || | || | ||||| ||||| Sbjct 1240169 GTACAAAAGGAATCTACATTGCATTTGGTGTT 1240200 Score = 116 bits (128), Expect = 5e-21 Identities = 142/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 ||||||||||| || | || ||||||||||| ||||| || || |||||||| ||| Sbjct 1232341 AAAATGCAAATCTTCGTAAAGACATTGACTGGCAAAACAATCACTTTAGAAGTGGAACCA 1232400 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 ||||||| ||| ||| || ||| || || ||||| |||||||| || ||||| || Sbjct 1232401 TCTGATACAATTGAAAATGTAAAAGCAAAGATCCAAGACAAAGAAGGTATTCCTCCCGAT 1232460 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 || || | ||||| | ||| || || || || |||||| | || || || ||||| Sbjct 1232461 CAGCAGCGTTTGATCTTTGCTGGCAAACAACTGGAAGATGGGCGCACATTGTCTGATTAC 1232520 Query 156000 AATATATCCAAAGA 156013 |||||| ||||| Sbjct 1232521 AATATACAAAAAGA 1232534 Score = 116 bits (128), Expect = 5e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| ||||||| |||||||| ||||| ||||| || || || || ||| Sbjct 1239761 ATGCAAATTTTTGTTAAAACTTTGACTGGCAAAACCATTACTTTGGAGGTAGAGCCTTCC 1239820 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | | || |||||| ||| ||| || |||||||| ||||| || || ||||| || Sbjct 1239821 GACACTGTTGAAAACGTTAAAGCTAAGATCCAAGATAAGGAAGGTATTCCCCCAGACCAG 1239880 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | ||||| | || ||||| || | |||||| | ||| | || ||||| || Sbjct 1239881 CAGCGTTTGATCTTCGCTGGTAAACAATTGGAAGATGGTCGCACTCTCTCGGATTACAAC 1239940 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTT 156034 ||| ||||| | || | ||||||||||| Sbjct 1239941 ATACAGAAAGAATCAACCTTGCATTTAGTGTT 1239972 Score = 114 bits (126), Expect = 2e-20 Identities = 152/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| | ||||| |||||||| ||| | ||||| || || || ||| || Sbjct 1241334 AATGCAAATCTTTGTAAAAACTTTGACTGGCAAATCCATTACTTTGGAGGTAGAACCATC 1241393 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 |||| ||| |||||| ||| ||||| |||||||||||||| || |||||||| || Sbjct 1241394 AGATACTATCGAAAACGTTAAAGCAAAAATTCAAGATAAAGAAGGTATTCCTCCAGATCA 1241453 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || | ||||| | ||| || || || | ||||| | ||| | || ||||| || Sbjct 1241454 GCAGCGTTTGATCTTTGCTGGCAAACAATTAGAAGACGGTCGCACTCTTTCGGATTACAA 1241513 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTG 156032 |||| ||||| | || | ||||| ||| Sbjct 1241514 TATACAGAAAGAATCAACTTTGCATTTGGTG 1241544 Score = 111 bits (122), Expect = 2e-19 Identities = 153/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| ||||||| |||||||| ||||||||||| || || || || || Sbjct 1241562 AATGCAAATCTTTGTTAAAACTTTGACTGGCAAAACTATTACTTTGGAGGTAGAGCCGTC 1241621 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 |||| ||| || || ||| ||||| |||||||| ||||| || |||| || || Sbjct 1241622 GGATACTATCGAAACGGTTAAAGCAAAAATCCAAGATAAGGAAGGTATTTCTCCCGATCA 1241681 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||| | ||||| | ||| || || || | ||||| | ||| | || ||||| || Sbjct 1241682 ACAGCGTTTGATCTTTGCTGGCAAACAATTGGAAGACGGGCGCACTCTGTCCGATTAAAA 1241741 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTGTTA 156035 ||| ||||| | || || |||||||| ||| Sbjct 1241742 TATCCAAAAAGAATCAACACTCCATTTAGTCTTA 1241775 Score = 109 bits (120), Expect = 8e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || ||||||||||| |||||||| || || || || || ||| Sbjct 1232572 ATGCAAATTTTTGTCAAGACATTGACTGGCAAAACTATCACCTTGGAGGTTGAGCCTTCC 1232631 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| || || || ||| || |||||||| ||||| || || ||||| ||| Sbjct 1232632 GATACTATTGAGAATGTTAAGGCTAAGATTCAAGATAAGGAAGGAATCCCACCAGATCAA 1232691 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | || || | || ||||| ||| | ||||| | || || || ||||| ||| Sbjct 1232692 CAGCGTTTAATCTTCGCTGGTAAACAGTTAGAAGACGGGCGCACATTGTCTGATTACAAT 1232751 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 ||| || || | ||| | ||||| || ||| | || | |||||| Sbjct 1232752 ATACAAAAGGAATCTACGTTGCATTTGGTCTTACGTTTGCGTGGCGGT 1232799 Score = 109 bits (120), Expect = 8e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 |||||||| || || | || ||||||||||| |||||| | || || || || || | Sbjct 1239530 AAAATGCAGATCTTCGTGAAGACATTGACTGGGAAAACTGTCACCTTGGAGGTTGAGCCT 1239589 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 || |||| |||| || || ||| ||| || |||||||| ||||| || || ||||| Sbjct 1239590 TCCGATACTATTGAGAATGTTAAAGCTAAGATTCAAGATAAGGAAGGAATCCCACCAGAT 1239649 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 |||||| | || || | || ||||| ||||| ||||| | || || || ||||| Sbjct 1239650 CAACAACGTTTAATATTCGCTGGTAAACAGCTAGAAGACGGGCGCACATTGTCTGATTAC 1239709 Query 156000 AATATATCCAAAGAGGCGACGCTTCATTTAGTGTT 156034 |||||| || || | ||| | ||||| || || Sbjct 1239710 AATATACAAAAGGAATCTACGTTGCATTTGGTCTT 1239744 >seq1 Length=10097680 Score = 113 bits (124), Expect = 7e-20 Identities = 166/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 ||||||||||| || ||||||| | ||||| ||||| ||||| || ||||| || | Sbjct 7547386 AAAATGCAAATTTTCGTTAAAACTCTTACTGGCAAAACAATTACTTTGGAAGTTGAGCCT 7547445 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 || || | |||| ||| || || ||||| || || ||||| ||||| |||||||| Sbjct 7547446 TCCGACACTATTGAAAATGTCAAGGCCAAAATTCAGGACAAAGAGGGCATTCCTCCAGAT 7547505 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 || ||| | ||||| | || || || || | |||||| | ||||| || ||||| Sbjct 7547506 CAGCAACGTTTGATCTTCGCTGGCAAACAATTGGAAGATGGGCGGACTTTGTCTGATTAC 7547565 Query 156000 AATATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTGTAA 156054 |||||| ||||| |||| | ||||| || | | || |||| ||| ||| Sbjct 7547566 AATATACAGAAAGAATCGACATTGCATTTGGTACTTCGTTTGCGAGGTGGTATAA 7547620 >seq308 Length=190705 Score = 104 bits (114), Expect = 3e-17 Identities = 165/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 || ||||| || ||| | ||||| | || || || || ||||| | || ||||| Sbjct 86851 AATATGCAGATTTTTGTAAAAACCCTTACGGGCAAGACCATTACTCTTGAGGTCGAGCCC 86792 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 ||||||| |||| ||| |||||| || || || || ||||| || || || || || Sbjct 86791 TCTGATACTATTGAAAATGTGAAAGCCAAGATTCAGGACAAAGAGGGAATTCCACCCGAC 86732 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 |||||| ||||||| | || || || || | |||||| | || ||||| |||||| Sbjct 86731 CAACAACGATTGATCTTCGCTGGAAAACAATTGGAAGATGGTCGCACATTATCGGATTAT 86672 Query 156000 AATATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTGTAAAA 156056 ||||| ||||| | ||| | ||| | ||||| | || |||| |||| |||| Sbjct 86671 AATATTCAAAAAGAATCCACGTTACATCTTGTGTTGCGTTTGCGAGGTGGTGCAAAA 86615 >seq459 Length=70901 Score = 87.8 bits (96), Expect = 3e-12 Identities = 131/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 || ||||| || ||| | |||| ||||| || | || || ||||| || || ||| Sbjct 19005 AATATGCAGATTTTTGTGAAAATGTTGACAGGCATTACGATCACATTGGACGTAGAACCA 18946 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 |||||| ||| | || |||| ||||| || |||| ||| | ||| | |||| Sbjct 18945 ACTGATACGATTGAAGCGGTTAAAACCAAAATTCAGGATACAGATGACATCCTACCAGGT 18886 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 ||||| | |||||||||||||||||||| || |||||| || |||| |||||| Sbjct 18885 CAACATCGTTTGATTTATGCCGGTAAGCATCTAGAAGATGATCTCACATTATTGGATTAT 18826 Query 156000 AATATA 156005 ||||| Sbjct 18825 TATATA 18820 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731856895991600