Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq184 192 1e-43 seq308 150 4e-31 seq53 150 4e-31 seq1 134 3e-26 seq27 87.8 4e-12 >seq184 Length=525875 Score = 192 bits (212), Expect = 1e-43 Identities = 474/719 (66%), Gaps = 11/719 (2%) Strand=Plus/Minus Query 49637 CAATACATATAATAATCTATCGGCTACAAATTCAACATATTGTGACATTAATTCACAATT 49696 |||| | ||| || | ||| |||||| |||| | ||||| |||| |||| ||| Sbjct 28984 CAATTCTAATAGCAAACGATCCGCTACATATTCTATGTATTGACACATACTTTCATTATT 28925 Query 49697 CATACCCAATAATTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagc 49756 |||||| | ||| || | ||||| || || | |||||| ||||| |||| || || Sbjct 28924 CATACCGATTAAATTGACTGGTAGAGCTTCTGTCAGAAATTCCTTTTCAATTTTAACGGC 28865 Query 49757 ttgtttaattatcataattata--ttattttttgataatttatatttaatatgattcgca 49814 | | ||||| | ||| || ||| | ||| ||| ||||| || | Sbjct 28864 ATCGGTTATTATTTCCAATATGCGTTCTTTGGTCGGTTTTTGTATCAAATAT--TT---A 28810 Query 49815 tatattaaACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTA 49874 | |||||| ||||| || ||||||||| || || | ||||| ||||||||| | Sbjct 28809 AACATTAAAACCGCAAATTCGCAATGTAAACCTTCATCGCGTGATATTAATTCATTAGAA 28750 Query 49875 AAAGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTA 49934 || |||| || ||||||| ||| | || |||||||||||||| || |||||||| | | Sbjct 28749 AATGTTAGACCCGGCATTATTCCACGTTTCTTAAGCCAAAATATCGAAGCAAAACTTCCA 28690 Query 49935 GAAAAGAATATACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTA 49994 |||||||||||| ||||| ||||| ||||| | | | ||||| ||| | Sbjct 28689 CTAAAGAATATACCTTCGACGGCAGCAAAAGCTATGACACGCTCACCAAA-ATTCGCCGA 28631 Query 49995 TCATC-TAATATCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTC 50053 | | |||||||| || |||||| || ||||| ||||| | | || || | || Sbjct 28630 ACGCGATGATATCCAAGCTAAAGCCCATTCCGCTTTCTTTTTAACTAACGGCATCGTCTC 28571 Query 50054 TATAGCTTTAAATAATTCAtttttttCATNNNNNNNNNNNNNNNNNNNNNNNATTAATAA 50113 || || ||||| | | || ||| | || | ||| Sbjct 28570 AATGGCATTAAAAAGATAATCGCGTTCTTTCGGATCTGCGATAAATGTTTCAATAAGTAA 28511 Query 50114 AGAATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTGC 50173 | ||||||||| || |||||| ||| || ||||||||||| |||||| | || Sbjct 28510 ACTATACATTTCCGAGTGTACATTTTCGATGGCTATTTGAAAACCATAAAAGCAACGAGC 28451 Query 50174 TTCTGAATACT-GAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCAT 50232 ||| | |||| ||||||| | | || ||||| |||||||||||| ||||| || | Sbjct 28450 TTCGGT-TACTTGAACTTCTTGAGAAAAACGTTCCACTAAATTCTCATTAACAATGCCGT 28392 Query 50233 CAGATGCTGCGAAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTTAAAT 50292 ||||||| || || || || ||||| | | ||||||||| ||||| ||| |||| Sbjct 28391 CAGATGCCGCAAAAAAAGCCAAAACATGTGAAATAAAATGACGTTCATCATCAGTTAATC 28332 Query 50293 TTTCCCAAGATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAATGATGCT 50351 |||||| |||||||| | | ||| || ||||| |||||||| || ||| Sbjct 28331 GCTCCCAATGATCAAGATCTGCAGCGAGATCAACCTCTTCCGCCGTCCAAAAAGAAGCT 28273 >seq308 Length=190705 Score = 150 bits (166), Expect = 4e-31 Identities = 172/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||||| | ||| || || | |||||| || | ||||| ||||||||||| || Sbjct 86621 ACCACCTCGCAAACGCAACACAAGATGTAACGTGGATTCTTTTTGAATATTATAATCCGA 86680 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 |||||| || |||| ||||||||||| ||||| ||||| |||| ||||| || ||||| Sbjct 86681 TAATGTGCGACCATCTTCCAATTGTTTTCCAGCGAAGATCAATCGTTGTTGGTCGGGTGG 86740 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 ||||| ||||| || || || || ||| ||||| |||| ||| || | || || Sbjct 86741 AATTCCCTCTTTGTCCTGAATCTTGGCTTTCACATTTTCAATAGTATCAGAGGGCTCGAC 86800 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || ||||||||||| || || || | ||||| | ||| |||||||| || Sbjct 86801 CTCAAGAGTAATGGTCTTGCCCGTAAGGGTTTTTACAAAAATCTGCATATT 86851 >seq53 Length=1361919 Score = 150 bits (166), Expect = 4e-31 Identities = 178/240 (74%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | ||||||| || || || || || | ||||| ||||| |||||| Sbjct 1232573 ATGCCACCACGCAGACGTAGAACCAAGTGCAATGTTGATTCTTTTTGTATATTGTAATCA 1232514 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || ||||| || |||| |||| |||||| ||||||||||| || | ||| ||||| || Sbjct 1232513 GACAATGTGCGCCCATCTTCCAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGATCGGGA 1232454 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| ||||| || || ||||||||| || | ||| || | ||| Sbjct 1232453 GGAATACCTTCTTTGTCTTGGATCTTTGCTTTTACATTTTCAATTGTATCAGATGGTTCC 1232394 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTTATTAGAA 192546 ||||||| ||| || ||||| ||||| ||||| || | || || ||||||| |||||| Sbjct 1232393 ACTTCTAAAGTGATTGTTTTGCCAGTCAATGTCTTTACGAAGATTTGCATTT--TTAGAA 1232336 Score = 150 bits (166), Expect = 4e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 || || | ||||||||| |||||||| | || | ||||| |||||| ||||| || Sbjct 1241789 CCTCCGCGAAGACGTAAGACTAAATGGAGTGTTGATTCTTTTTGGATATTTTAATCGGAC 1241730 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | || || | || ||||||||||| ||||||||||| || | ||||||||| || | Sbjct 1241729 AGAGTGCGCCCGTCTTCCAATTGTTTGCCAGCAAAGATCAAACGCTGTTGATCGGGAGAA 1241670 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 || ||||| |||||||| ||||| ||| || | |||| ||| |||| ||||| Sbjct 1241669 ATACCTTCCTTATCTTGGATTTTTGCTTTAACCGTTTCGATAGTATCCGACGGCTCTACC 1241610 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || | |||||| ||||| ||||| || ||||||| ||| || |||||| Sbjct 1241609 TCCAAAGTAATAGTTTTGCCAGTCAAAGTTTTAACAAAGATTTGCATT 1241562 Score = 149 bits (164), Expect = 1e-30 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | ||||| || || ||||| || |||| || || | ||| ||||| Sbjct 1240218 ATTCCACCACGGAGACGCAACACCAAATGCAATGTAGATTCCTTTTGTACATTGTAATCC 1240159 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || | || || |||||||| |||||||| || || | ||| ||||| || Sbjct 1240158 GAAAGAGTGCGGCCGTCTTCTAATTGTTTGCCAGCAAAAATCAAACGCTGCTGATCTGGA 1240099 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||||||||| ||||| ||| || || |||| ||| || | |||| Sbjct 1240098 GGAATACCTTCTTTATCTTGAATTTTTGCTTTAACGTTTTCGATAGTATCCGATGGTTCT 1240039 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | |||||||||||| ||||| || ||||||| ||| |||||||| Sbjct 1240038 ACTTCCAAAGTAATGGTTTTTCCAGTCAAAGTTTTAACAAAGATCTGCAT 1239989 Score = 147 bits (162), Expect = 4e-30 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | ||||| | || ||||| ||||| | ||||| ||||| ||||| Sbjct 1241564 ATTCCACCGCGGAGACGCAGCACCAAATGCAAAGTTGATTCTTTCTGTATATTGTAATCC 1241505 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || | || || |||||||| ||||||||||| || | ||| ||||| || Sbjct 1241504 GAAAGAGTGCGACCGTCTTCTAATTGTTTGCCAGCAAAGATCAAACGCTGCTGATCTGGA 1241445 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||||||||| ||||| ||| || || |||| |||||| | |||| Sbjct 1241444 GGAATACCTTCTTTATCTTGAATTTTTGCTTTAACGTTTTCGATAGTATCTGATGGTTCT 1241385 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || || | |||||||| ||| ||||| || ||||| | ||| || |||||| Sbjct 1241384 ACCTCCAAAGTAATGGATTTGCCAGTCAAAGTTTTTACAAAGATTTGCATT 1241334 Score = 145 bits (160), Expect = 2e-29 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| || | | |||||| || ||||| || |||| || || ||||| |||||| Sbjct 1232801 ATACCGCCACGCAAACGTAAGACCAAATGCAACGTAGATTCCTTTTGTATATTGTAATCA 1232742 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || ||||| || | || || || ||||||||||| |||||||| | ||||||||| ||| Sbjct 1232741 GACAATGTGCGCCCGTCTTCTAACTGTTTACCAGCGAAGATTAAACGCTGTTGATCTGGT 1232682 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || |||||||| |||||||| || ||| || ||||| |||| ||| || | || Sbjct 1232681 GGGATTCCTTCCTTATCTTGAATCTTAGCCTTAACATTCTCAATAGTATCGGAAGGCTCA 1232622 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || | || || ||||| ||||| ||||| || | ||| || ||||| Sbjct 1232621 ACCTCCAAGGTGATAGTTTTGCCAGTCAATGTCTTGACAAAAATTTGCAT 1232572 Score = 141 bits (156), Expect = 2e-28 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | ||||| || || ||||| ||||| | ||||| ||||| || || Sbjct 1240446 ATTCCACCGCGGAGACGCAACACCAAATGCAAAGTTGATTCTTTCTGTATATTGTAGTCC 1240387 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || | || |||| ||||| ||||||||||| || | ||| || || || Sbjct 1240386 GAGAGAGTACGACCGTCTTCCAGCTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGA 1240327 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||||||||| ||||| || || || |||| ||| || | |||| Sbjct 1240326 GGAATACCTTCTTTATCTTGAATTTTTGCCTTAACGTTTTCGATAGTATCCGATGGTTCT 1240267 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || || | |||||||||||| ||||| || ||||||| |||||| |||||| Sbjct 1240266 ACCTCCAAAGTAATGGTTTTGCCAGTCAAAGTTTTAACAAATATTTGCATT 1240216 Score = 140 bits (154), Expect = 6e-28 Identities = 177/240 (74%), Gaps = 4/240 (2%) Strand=Plus/Minus Query 192298 AGTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGAT 192356 ||||||| |||||||| | || ||||| || ||||| | ||||| ||| ||| || || Sbjct 1234472 AGTTTAA--ATACCACCACGCAGGCGTAAGACCAAATGGAGAGTAGACTCCTTTTGA-AT 1234416 Query 192357 ATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTG 192416 |||||||| || | || || |||| ||||||||||||||||| ||||| || | ||| Sbjct 1234415 GTTATAATCGGAGAGAGTACGGCCATCTTCCAATTGTTTACCAGCGAAGATCAAACGCTG 1234356 Query 192417 TTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATC 192476 || || || || || ||||| ||||| || || ||| ||| || || || | ||| Sbjct 1234355 CTGGTCTGGGGGAATACCTTCCTTATCCTGGATCTTAGCTTTGACGTTTTCAATGGTATC 1234296 Query 192477 TGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || | || ||||| | ||| ||||||||||| || || ||||| | || || ||||| Sbjct 1234295 GGAAGGCTCGACTTCCAAAGTGATGGTTTTACCGGTCAAAGTTTTGACGAAGATTTGCAT 1234236 Score = 138 bits (152), Expect = 2e-27 Identities = 171/234 (73%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | | ||| || || ||||| || |||| || || ||||| |||||| Sbjct 1239762 ATACCACCACGCAAACGCAAGACCAAATGCAACGTAGATTCCTTTTGTATATTGTAATCA 1239703 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || ||||| || | || || | ||||||||||| || ||||| | |||||||| ||| Sbjct 1239702 GACAATGTGCGCCCGTCTTCTAGCTGTTTACCAGCGAATATTAAACGTTGTTGATCTGGT 1239643 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || |||||||| |||||||| || ||| ||| ||||| |||| ||| || | || Sbjct 1239642 GGGATTCCTTCCTTATCTTGAATCTTAGCTTTAACATTCTCAATAGTATCGGAAGGCTCA 1239583 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTTA 192540 || || | || | ||||| ||||| ||||| || | || |||||||||||| Sbjct 1239582 ACCTCCAAGGTGACAGTTTTCCCAGTCAATGTCTTCACGAAGATCTGCATTTTA 1239529 Score = 131 bits (144), Expect = 3e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | | ||| || |||||||| || || | ||||| || || ||||| Sbjct 1239990 ATGCCACCGCGCAAACGCAACACTAAATGCAAGGTTGATTCTTTCTGTATGTTGTAATCC 1239931 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || |||| ||||||||||||||||| ||||| || | ||| || || || Sbjct 1239930 GAGAGAGTGCGACCATCTTCCAATTGTTTACCAGCGAAGATCAAACGCTGCTGGTCTGGG 1239871 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| |||||||| || ||| ||| || || | || || || | ||| Sbjct 1239870 GGAATACCTTCCTTATCTTGGATCTTAGCTTTAACGTTTTCAACAGTGTCGGAAGGCTCT 1239811 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || | |||||||||||| ||||| || ||||||| ||| || ||||| Sbjct 1239810 ACCTCCAAAGTAATGGTTTTGCCAGTCAAAGTTTTAACAAAAATTTGCAT 1239761 >seq1 Length=10097680 Score = 134 bits (148), Expect = 3e-26 Identities = 172/237 (73%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 192303 AATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATA 192362 ||| |||||||||| | ||| | ||| ||||| || || | ||||| ||||| || Sbjct 7547622 AATTATACCACCTCGCAAACGAAGTACCAAATGCAATGTCGATTCTTTCTGTATATTGTA 7547563 Query 192363 ATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATC 192422 |||||| || || || |||| ||||||||||| ||||| ||||| || | || ||||| Sbjct 7547562 ATCAGACAAAGTCCGCCCATCTTCCAATTGTTTGCCAGCGAAGATCAAACGTTGCTGATC 7547503 Query 192423 AGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGA 192482 || || || || ||||| || || ||||| || ||||| |||| || || | Sbjct 7547502 TGGAGGAATGCCCTCTTTGTCCTGAATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGG 7547443 Query 192483 TTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || ||||| | |||||| ||||| ||||| | ||||||| || || |||||||| Sbjct 7547442 CTCAACTTCCAAAGTAATTGTTTTGCCAGTAAGAGTTTTAACGAAAATTTGCATTTT 7547386 >seq27 Length=2268459 Score = 87.8 bits (96), Expect = 4e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 ||||| | |||||||| |||||||| || | | ||| || ||||| ||||| || Sbjct 2182733 CCACCACGTAGACGTAACACTAAATGCAATTTGGACTCCTTTTGTATATTGTAATCGCAT 2182792 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 ||| | |||| || |||||||||| || || |||||||| ||||| || |||| Sbjct 2182793 AATTTACGTTTGTCTTCCAATTGTTGGCCGGCGAAGATTAAAAATTGTTGTTCTGGTGCG 2182852 Query 192430 ATTCCTTCTTTATCTT 192445 |||||||||||| ||| Sbjct 2182853 ATTCCTTCTTTAGCTT 2182868 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984459174863850