Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq184 152 9e-32 seq53 149 1e-30 seq308 138 2e-27 seq1 120 5e-22 >seq184 Length=525875 Score = 152 bits (168), Expect = 9e-32 Identities = 462/719 (64%), Gaps = 11/719 (2%) Strand=Plus/Minus Query 38939 CAATACATATAATAATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATT 38998 |||| | ||| || | ||| || ||| |||| | ||||| |||| |||| ||| Sbjct 28984 CAATTCTAATAGCAAACGATCCGCTACATATTCTATGTATTGACACATACTTTCATTATT 28925 Query 38999 CATACCCAATAATTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagc 39058 |||||| | ||| || | ||||| || || | |||||| ||||| |||| || || Sbjct 28924 CATACCGATTAAATTGACTGGTAGAGCTTCTGTCAGAAATTCCTTTTCAATTTTAACGGC 28865 Query 39059 ttgtttaattatcataattata--ttattttttgataatttatatttaatatgattcgca 39116 | | ||||| | ||| || ||| | ||| ||| ||||| || | Sbjct 28864 ATCGGTTATTATTTCCAATATGCGTTCTTTGGTCGGTTTTTGTATCAAATAT--TT---A 28810 Query 39117 tataGTAAACATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTA 39176 | | |||| ||||| || |||||||||||| || | ||||| ||||||||| | Sbjct 28809 AACATTAAAACCGCAAATTCGCAATGTAAACCTTCATCGCGTGATATTAATTCATTAGAA 28750 Query 39177 AAAGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTA 39236 || |||| || ||||||| ||| | || |||||||||||||| || |||||||| | | Sbjct 28749 AATGTTAGACCCGGCATTATTCCACGTTTCTTAAGCCAAAATATCGAAGCAAAACTTCCA 28690 Query 39237 GAAAAGAATATACCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTA 39296 |||||||||||| || || ||||| ||||| | | | ||||| ||| | Sbjct 28689 CTAAAGAATATACCTTCGACGGCAGCAAAAGCTATGACACGCTCACCAAA-ATTCGCCGA 28631 Query 39297 TCATC-TAAAATCCAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTC 39355 | | | |||||| || ||||| || ||||| ||||| | | || || | || Sbjct 28630 ACGCGATGATATCCAAGCTAAAGCCCATTCCGCTTTCTTTTTAACTAACGGCATCGTCTC 28571 Query 39356 TATAGCTTTAAATAATTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 39415 || || ||||| | | || Sbjct 28570 AATGGCATTAAAAAGATAATCGCGTTCTTTCGGATCTGCGATAAATGTTTCAATAAGTAA 28511 Query 39416 AGAATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGC 39475 | ||||||||| || |||||| ||| || ||||||||||| |||||| | || Sbjct 28510 ACTATACATTTCCGAGTGTACATTTTCGATGGCTATTTGAAAACCATAAAAGCAACGAGC 28451 Query 39476 TTCTGAATACT-GAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCAT 39534 ||| | |||| ||||||| | | || ||||| |||||||||||| ||||| || | Sbjct 28450 TTCGGT-TACTTGAACTTCTTGAGAAAAACGTTCCACTAAATTCTCATTAACAATGCCGT 28392 Query 39535 CAGATGCTGCGAAGAATGCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAAAT 39594 ||||||| || || || || ||||||| | ||||||||| ||||| ||| |||| Sbjct 28391 CAGATGCCGCAAAAAAAGCCAAAACATGTGAAATAAAATGACGTTCATCATCAGTTAATC 28332 Query 39595 TTTCCCAAGATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAAAGATGCT 39653 |||||| |||||||| | | ||| || ||||| ||||||||||| ||| Sbjct 28331 GCTCCCAATGATCAAGATCTGCAGCGAGATCAACCTCTTCCGCCGTCCAAAAAGAAGCT 28273 >seq53 Length=1361919 Score = 149 bits (164), Expect = 1e-30 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | || || || || ||||| || |||| || || | ||| ||||| Sbjct 1240218 ATTCCACCACGGAGACGCAACACCAAATGCAATGTAGATTCCTTTTGTACATTGTAATCC 1240159 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || || |||| || |||||||| ||||||||||| || | ||| || || || Sbjct 1240158 GAAAGAGTGCGGCCGTCTTCTAATTGTTTGCCAGCAAAAATCAAACGCTGCTGATCTGGA 1240099 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||||||||| ||||| ||| || || |||||||| || | |||| Sbjct 1240098 GGAATACCTTCTTTATCTTGAATTTTTGCTTTAACGTTTTCGATAGTATCCGATGGTTCT 1240039 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | |||||||||||| ||||| || ||||||| || |||||||| Sbjct 1240038 ACTTCCAAAGTAATGGTTTTTCCAGTCAAAGTTTTAACAAAGATCTGCAT 1239989 Score = 141 bits (156), Expect = 2e-28 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 171839 AATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATC 171898 ||||||||| | || ||||| || ||||| | ||||| ||| || ||| |||||||| Sbjct 1234466 AATACCACCACGCAGGCGTAAGACCAAATGGAGAGTAGACTCCTTTTGAATGTTATAATC 1234407 Query 171899 TGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGG 171958 || | || || | || ||||||||||||||||| || || || | ||| ||||| || Sbjct 1234406 GGAGAGAGTACGGCCATCTTCCAATTGTTTACCAGCGAAGATCAAACGCTGCTGGTCTGG 1234347 Query 171959 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTC 172018 || || ||||| ||||| || || ||| ||| || || || ||||| || | || Sbjct 1234346 GGGAATACCTTCCTTATCCTGGATCTTAGCTTTGACGTTTTCAATGGTATCGGAAGGCTC 1234287 Query 172019 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | ||| ||||||||||| || || ||||| | ||| || ||||| Sbjct 1234286 GACTTCCAAAGTGATGGTTTTACCGGTCAAAGTTTTGACGAAGATTTGCAT 1234236 Score = 141 bits (156), Expect = 2e-28 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | || || || || ||||| ||||| | ||||| ||||| || || Sbjct 1240446 ATTCCACCGCGGAGACGCAACACCAAATGCAAAGTTGATTCTTTCTGTATATTGTAGTCC 1240387 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || || |||| |||| ||||| |||||||| || || | ||| ||||| || Sbjct 1240386 GAGAGAGTACGACCGTCTTCCAGCTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGA 1240327 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||||||||| ||||| || || || |||||||| || | |||| Sbjct 1240326 GGAATACCTTCTTTATCTTGAATTTTTGCCTTAACGTTTTCGATAGTATCCGATGGTTCT 1240267 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || | |||||||||||| ||||| || ||||||| ||||| |||||| Sbjct 1240266 ACCTCCAAAGTAATGGTTTTGCCAGTCAAAGTTTTAACAAATATTTGCATT 1240216 Score = 138 bits (152), Expect = 2e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | || || | || ||||| ||||| | ||||| ||||| ||||| Sbjct 1241564 ATTCCACCGCGGAGACGCAGCACCAAATGCAAAGTTGATTCTTTCTGTATATTGTAATCC 1241505 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || || |||| || |||||||| |||||||| || || | ||| || || || Sbjct 1241504 GAAAGAGTGCGACCGTCTTCTAATTGTTTGCCAGCAAAGATCAAACGCTGCTGATCTGGA 1241445 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||||||||| ||||| ||| || || ||||||||||| | |||| Sbjct 1241444 GGAATACCTTCTTTATCTTGAATTTTTGCTTTAACGTTTTCGATAGTATCTGATGGTTCT 1241385 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || | |||||||| ||| ||||| || ||||| | || || |||||| Sbjct 1241384 ACCTCCAAAGTAATGGATTTGCCAGTCAAAGTTTTTACAAAGATTTGCATT 1241334 Score = 136 bits (150), Expect = 7e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 || || | ||| ||||| |||||||| | || | ||||| ||||| ||||| || Sbjct 1241789 CCTCCGCGAAGACGTAAGACTAAATGGAGTGTTGATTCTTTTTGGATATTTTAATCGGAC 1241730 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 | || || |||| ||||||||||| |||||||| || || | |||||| || || | Sbjct 1241729 AGAGTGCGCCCGTCTTCCAATTGTTTGCCAGCAAAGATCAAACGCTGTTGATCGGGAGAA 1241670 Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022 || ||||| |||||||| ||||| ||| || | |||||||| |||| ||||| Sbjct 1241669 ATACCTTCCTTATCTTGGATTTTTGCTTTAACCGTTTCGATAGTATCCGACGGCTCTACC 1241610 Query 172023 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || | |||||| ||||| ||||| || ||||||| || || |||||| Sbjct 1241609 TCCAAAGTAATAGTTTTGCCAGTCAAAGTTTTAACAAAGATTTGCATT 1241562 Score = 129 bits (142), Expect = 1e-24 Identities = 169/234 (72%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | | || || || ||||| || |||| || || ||||| ||||| Sbjct 1239762 ATACCACCACGCAAACGCAAGACCAAATGCAACGTAGATTCCTTTTGTATATTGTAATCA 1239703 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || || | || |||| || | ||||||||||| || ||||| | ||||| || ||| Sbjct 1239702 GACAATGTGCGCCCGTCTTCTAGCTGTTTACCAGCGAATATTAAACGTTGTTGATCTGGT 1239643 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || |||||||| |||||||| || ||| ||| ||||| |||||||| || | || Sbjct 1239642 GGGATTCCTTCCTTATCTTGAATCTTAGCTTTAACATTCTCAATAGTATCGGAAGGCTCA 1239583 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTTA 172073 || || | || | ||||| ||||| ||||| || | ||| |||||||||||| Sbjct 1239582 ACCTCCAAGGTGACAGTTTTCCCAGTCAATGTCTTCACGAAGATCTGCATTTTA 1239529 Score = 122 bits (134), Expect = 2e-22 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 171855 CGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCG 171914 ||||| || ||||| || |||| || || ||||| ||||| || || | || || Sbjct 1232786 CGTAAGACCAAATGCAACGTAGATTCCTTTTGTATATTGTAATCAGACAATGTGCGCCCG 1232727 Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || || || ||||||||||| || ||||| | |||||| || ||||| |||||||| ||| Sbjct 1232726 TCTTCTAACTGTTTACCAGCGAAGATTAAACGCTGTTGATCTGGTGGGATTCCTTCCTTA 1232667 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 ||||| || ||| || ||||| |||||||| || | || || || | || || Sbjct 1232666 TCTTGAATCTTAGCCTTAACATTCTCAATAGTATCGGAAGGCTCAACCTCCAAGGTGATA 1232607 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| ||||| ||||| || | || || ||||| Sbjct 1232606 GTTTTGCCAGTCAATGTCTTGACAAAAATTTGCAT 1232572 Score = 122 bits (134), Expect = 2e-22 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 171855 CGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCG 171914 || || |||||||| || || | ||||| || || ||||| || | || || | Sbjct 1239975 CGCAACACTAAATGCAAGGTTGATTCTTTCTGTATGTTGTAATCCGAGAGAGTGCGACCA 1239916 Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || ||||||||||||||||| || || || | ||| ||||| || || || ||||| ||| Sbjct 1239915 TCTTCCAATTGTTTACCAGCGAAGATCAAACGCTGCTGGTCTGGGGGAATACCTTCCTTA 1239856 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 ||||| || ||| ||| || || | ||| || || | ||||| || | ||||||| Sbjct 1239855 TCTTGGATCTTAGCTTTAACGTTTTCAACAGTGTCGGAAGGCTCTACCTCCAAAGTAATG 1239796 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| ||||| || ||||||| || || ||||| Sbjct 1239795 GTTTTGCCAGTCAAAGTTTTAACAAAAATTTGCAT 1239761 >seq308 Length=190705 Score = 138 bits (152), Expect = 2e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 |||||||| | || || || | |||||| || | ||||| |||||||||||| || Sbjct 86621 ACCACCTCGCAAACGCAACACAAGATGTAACGTGGATTCTTTTTGAATATTATAATCCGA 86680 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 ||| | || | || ||||||||||| ||||| || || |||| |||||||| ||||| Sbjct 86681 TAATGTGCGACCATCTTCCAATTGTTTTCCAGCGAAGATCAATCGTTGTTGGTCGGGTGG 86740 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 ||||| ||||| || || || || ||| ||||| |||||||| || | || || Sbjct 86741 AATTCCCTCTTTGTCCTGAATCTTGGCTTTCACATTTTCAATAGTATCAGAGGGCTCGAC 86800 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || ||||||||||| || || || | ||||| | || |||||||| || Sbjct 86801 CTCAAGAGTAATGGTCTTGCCCGTAAGGGTTTTTACAAAAATCTGCATATT 86851 >seq1 Length=10097680 Score = 120 bits (132), Expect = 5e-22 Identities = 168/236 (71%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 171837 ATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAA 171896 || |||||||||| | || | ||| ||||| || || | ||||| ||||| ||| Sbjct 7547621 ATTATACCACCTCGCAAACGAAGTACCAAATGCAATGTCGATTCTTTCTGTATATTGTAA 7547562 Query 171897 TCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCA 171956 || || |||| || | || ||||||||||| ||||| || || || | || || || Sbjct 7547561 TCAGACAAAGTCCGCCCATCTTCCAATTGTTTGCCAGCGAAGATCAAACGTTGCTGATCT 7547502 Query 171957 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGAT 172016 || || || || ||||| || || ||||| || ||||| ||||| || || | Sbjct 7547501 GGAGGAATGCCCTCTTTGTCCTGAATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGC 7547442 Query 172017 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || ||||| | |||||| ||||| ||||| | ||||||| ||| || |||||||| Sbjct 7547441 TCAACTTCCAAAGTAATTGTTTTGCCAGTAAGAGTTTTAACGAAAATTTGCATTTT 7547386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905117320255800