Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_021774.1 Length=29742 Score E Sequences producing significant alignments: (Bits) Value seq804 324 3e-84 >seq804 Length=1783 Score = 324 bits (358), Expect = 3e-84 Identities = 573/830 (69%), Gaps = 18/830 (2%) Strand=Plus/Minus Query 21331 GACACCATCCCTGTCTTCCCCCACATGATGTGGGGGttttttttATCAATTACTTACATG 21390 ||||||||||||||||||||| | | || | ||| | ||||| |||| |||||||| Sbjct 842 GACACCATCCCTGTCTTCCCCGCC-TCATCAGCGGGGTATTTTT-TCAACCACTTACAT- 786 Query 21391 CAATCAAAAGT--AAAAACAGGTACTTATCGAAAGCTGTAAGGGTTTGGAGCGGTTTCAA 21448 ||||||| | ||||||| | || ||||||| ||||| | || || |||||| Sbjct 785 CAATCAATCTTTAAAAAACAATAAGTTGAA-AAAGCTGCAAGGGGTATGAACGTTTTCAA 727 Query 21449 AATTTCTTGAGTGTGGACACTATGTGGACACTCAGAGGGGGAAATTTATAACGTCACTCC 21508 || || ||||||||| || | |||||||| || | || || ||| Sbjct 726 AAGTTGCTGAGTGTGGGCAATCCGTGGACACCT-----------TTAAGCACC-CAATCC 679 Query 21509 GCCTTTTAGTGGATTCAGAGCGACGGCATTTTGCAGATAGTCAGGCGCAAGGTGCGCATA 21568 |||||||||||||| | ||| ||||||||||| |||||||| || || | || ||||| Sbjct 678 CCCTTTTAGTGGATTTAAAGCCACGGCATTTTGAAGATAGTCGGGTGCTAAATGAGCATA 619 Query 21569 GGCCATCGTCTGCTGAATGCTCGCATGTCCCAGAATCTGTTGCAGTGCGATTATATTGCC 21628 |||||| || ||||| || | |||||||||| ||| | ||||||||| || ||||| || Sbjct 618 GGCCATTGTTTGCTGGATATTGGCATGTCCCAAAATTTCTTGCAGTGCAATAATATTACC 559 Query 21629 CCCATTCATCATGAAATGGCTTGCGAATGTATGCCGCAGGATGTGGGTTGCCTGATTGGG 21688 ||||||||||| ||||| || || |||||||| || || | || |||||||| | | Sbjct 558 ACCATTCATCATAAAATGACTAGCAAATGTATGACGTAGCACATGTGTTGCCTGGCCGTG 499 Query 21689 TGGTATATCAGGTTTCACTCTGCGTAAAATCCCGCAAAATTTCTCATAATCAACTTTGAA 21748 ||||| ||| ||||||||| || | | ||| ||||||||||| || |||||||| Sbjct 498 TGGTAGATCGGGTTTCACTGAACGCAGCTTTATGCAGAATTTCTCATAGTCTACTTTGAA 439 Query 21749 TAATTTGGCGCTGGCCTCCTCTTTAACTTTTTTCTCCAGTTCCTCAGAAATCGGCACGGT 21808 || | || || | | |||||| | ||||||| |||| || |||||||| Sbjct 438 CAAATGACTACTTGCATGCATTTTAACCTCACCTTCCAGTTGAGCAGATATTGGCACGGT 379 Query 21809 TCGCTTTTTACCGTTTTTGGTTTTCAGGAAGGTAACCCTGCAATTTGTAATCTGTGCTGG 21868 || || || || || || |||| || || ||||| | | || || || | || Sbjct 378 GCGTTTCTTGCCATTCTTAGTTTCAAGAAATGTAACTCGCCCTTTCACGATTTGCGTAGG 319 Query 21869 TTTTAGCGTGGCAACTTCCGTCCATCTTCCTCCGGTGCTCAGACATAAAAGCGCGACAAG 21928 | | | ||| |||||| ||| | ||| ||||| || || |||| | || | ||| Sbjct 318 TGTCAAGGTGCTCACTTCCCCCCACCGTCCACCGGTACTTAGGCATAGCAAGGCAATAAG 259 Query 21929 TAAGTCATCACCAGCCAAAACATTTAACAGTTTTTCGATTTCTGCTTTTTCCAGGAACGT 21988 ||||| |||| ||||||| || || || | |||||| | || | ||| || Sbjct 258 CCGCTCATCTCCAGACAAAACAGATAGTAGATTATTGATTTCATCAACATCAAAGAATGT 199 Query 21989 CATTTCAGGGTTGGCCTCCGCCAGTGGCGGCAGTCCGTGAATTGGGTGTTGCCCGGAAAA 22048 ||| || || || || ||||||||||| | ||| || | |||| ||| || || || Sbjct 198 CATCTCCGGATTTTTTTCTGCCAGTGGCGGTAATCCATGTAGCGGGTTTTGTCCTGAGAA 139 Query 22049 TTCATCCAATTGAATTAATTTTGTGAACATGCCGGATAATCGGTACATGTCACGGTTTAT 22108 ||| |||| | || | || ||||| || || |||| || | || ||||| || Sbjct 138 TTCGTCCAGCTTTATCAGCGCTGAAAACATCCCTGAAAATCTATAAAGATCTCGGTTAAT 79 Query 22109 CGTTGCGGCACTGATACCATCACGTAGTCGCATGGAACGATAATCCATCA 22158 || || |||||||| ||| || || || || ||| | ||||||| Sbjct 78 AGTGGCAGCACTGATGCCAGCAGATAAGCGTTTGCTACGGTGCTCCATCA 29 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 95050936430448