Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_021857.1 Length=41475 Score E Sequences producing significant alignments: (Bits) Value seq595 150 5e-32 seq731 113 1e-20 >seq595 Length=6865 Score = 150 bits (166), Expect = 5e-32 Identities = 323/481 (67%), Gaps = 4/481 (1%) Strand=Plus/Minus Query 8486 TTTGATTATATCGGTCTGCCGTTCAACGACACGGCCTCC--GTTAACACGCTGGTGACCG 8543 ||||||| |||||| || || ||| ||| || | ||| || || | | | | || Sbjct 6619 TTTGATTTTATCGGACTCCCCTTCGGCGATACTGACTCTTTGTAAAAAATCAGCGG--CG 6562 Query 8544 AGATGAACGATACCAGCGGTCGCTGGAGCTATGCGCGTCAGCTGTATGGTCATGTGTATA 8603 ||||||| ||||||||||| ||||||| | || || |||| || ||||| || | Sbjct 6561 AGATGAATGATACCAGCGGGCGCTGGAATCCTTATCGGCAATTGTACGGGCATGTCTACA 6502 Query 8604 CGGCAAAGACCGGCACACTGTCAGAACTGGTGAACGCAGGTGACCAGTTTAACCAGCAGC 8663 ||||||| || ||||| | | ||||| | | |||| |||||| | | | Sbjct 6501 CGGCAAAAACAGGCACGGTCGCTGAACTTATCGCCTTTGGTGCGGCGTTTAATGATCCAC 6442 Query 8664 ACATCACCCTGGCGGGGTACGAAAAAGAGACCCAGACGCCTGCCGACGAGCTGGCGGCAA 8723 || |||| | ||||| ||||||| | |||||| | || ||||||| || Sbjct 6441 ACCTCACTATCGCGGGATACGAAACCACTATCCAGACCGCATTAGATGAGCTGGTTGCGG 6382 Query 8724 GCCGTACCGCCCGCGCAGCGGTGTTTATCCGCAACGATCCGGCACGTCCCACGCAGACCG 8783 || || || ||| ||||| | ||||||||||||||| | || || || | || Sbjct 6381 CTCGGCTGGCGCGAAGTGCGATGTTTTTGCGCAACGATCCGGCAAGGCCAACACACAGCG 6322 Query 8784 GTGAGCTGGTGGGTATGCTGCCTGCGCCGAAGGGGAAACGGTTCACGATGACCGAGCAGC 8843 | ||| | || | | || || ||| ||| |||| ||||| |||| ||||||| Sbjct 6321 GCGAGTTAAACGGCGTATTACCCGCCCCGGCGGGTCAACGCTTCACCTTGACGGAGCAGC 6262 Query 8844 AGACCCTGCTGTCTCATGGCGTGGCAACGGCGTATGTCGAAAGCGGGGTGCTGCGCATTC 8903 | | || || | || ||| | || || || |||| ||| | || | |||| |||| Sbjct 6261 AATCGCTCCTTTTTCGTGGTATCGCCACAGCCAATGTAGAAGGTGGCGCATTGCGTATTC 6202 Query 8904 AGCGTGATGTCACCACGTACAGGAAAAATTCTTACGGGGTTGCGGATAACAGCTACCTCG 8963 | ||||| ||||| || |||| |||||| |||||||||||| ||||| ||||| || | Sbjct 6201 AACGTGACGTCACAACCTACAAGAAAAACAGTTACGGGGTTGCCGATAATAGCTATCTGG 6142 Query 8964 A 8964 | Sbjct 6141 A 6141 Score = 123 bits (136), Expect = 7e-24 Identities = 319/478 (67%), Gaps = 15/478 (3%) Strand=Plus/Minus Query 11954 ATTTTTTATGT--ACGGAGTTTATATGACG---TGGAAAGACAGACTTCAGGACGCGTCA 12008 |||||||| | | |||| | | |||||| |||||| | | ||| || || || Sbjct 4663 ATTTTTTAGATTAAGGGAGGTGAGATGACGGTATGGAAAAATAAACTCCATCCGGCATCC 4604 Query 12009 TTTCGCGGTGTGCCGTTTAAGGTTGAAGAAGAAAGTGCGGGAAC---CGGTCGTCGTGTG 12065 |||||||| ||||||||| |||| ||||| || | ||| || ||| || || || Sbjct 4603 TTTCGCGGCGTGCCGTTTCAGGTGGAAGACGAC---GAGGGGACTTTCGGACGGCGGGTA 4547 Query 12066 GAAACGCACGAATACCCGAACCGCGACAAACCCTATACCGAAGATCTGGGAAAAGTCACT 12125 || || |||||||| ||| | || || ||||||||||||||||||||| | ||| Sbjct 4546 CAAGTTCATGAATACCCCAACAGGGATAAGCCCTATACCGAAGATCTGGGACGCGCCACA 4487 Query 12126 TTCCGCCCGTCCATCACGGCTTATGTGGTGGGAGATGACTGCTTTGACCAGCGCGATCGC 12185 || | |||| || ||| || | || |||| | ||| || | | ||||| Sbjct 4486 CGACGATTTACTATCAACGCCTATCTGATCGGTAATGATTTCTTCGAGGACAGAGATCGT 4427 Query 12186 CTGATTGACGCGCTGAATAAACCCGGTCCCGGCACGCTTGTCCATCCGACATACGGTGAG 12245 || |||| || | ||| || || || || ||||| || ||||| |||||||| Sbjct 4426 CTCATTGTGGCTATTGATACGCCAGGGCCGGGAACGCTGGTACATCCCTACTACGGTGAA 4367 Query 12246 CTGAAAGTCTGTGTTGACGGGGAGGTTCGGGTCAGCACATCGAAGA-GTGAAGGGCGTAT 12304 | |||||| ||||||| || || | || ||| ||| | || | || || | || Sbjct 4366 ATAGCTGTCTGTATTGACGGTGAAGTGAGAGTAAGC-CATAGCGGACGCGATGGCAGGAT 4308 Query 12305 -TGTCCGCTTTGACCTGAAGTTTGTCGAAGCGGGAGAACTCTCTTACCCCACATCAGGTG 12363 ||| ||| | | | || | || || || || || || |||| ||| ||| |||||| Sbjct 4307 GTGT-CGCGTCAGCTTTAACGTAGTTGAGGCTGGCGAGCTTTCTTTCCCAACAGCAGGTG 4249 Query 12364 CGGCGACGGCGCAGACGCTGATGTCATCCTGTTCTGCACTGGATGACTGCATCAGTGA 12421 ||||||| || ||||| || || ||| |||| || || | || |||| |||| Sbjct 4248 TTGCGACGGGACAAACGCTAATTTCTTCCAGTTCAGCCTTGAACGATCGCATTGGTGA 4191 Score = 113 bits (124), Expect = 1e-20 Identities = 263/393 (67%), Gaps = 4/393 (1%) Strand=Plus/Minus Query 13158 CGCACGCCGGATGAGGTTTTACCCGCGCTGGTGCTGGCGGCGACCTGGTTTGATAACGCG 13217 || ||||| || | ||| ||||||| ||||| ||||| || | |||| ||| || ||| Sbjct 3466 CGTACGCCAGAGGCGGTGCTACCCGCACTGGTTCTGGCCGCCAAGTGGTATGACAATGCG 3407 Query 13218 GCGCGTGACGCGGACATTATCCGGCGTAATGCCATTACGCATCCCGGCTTTGTGCCGGTG 13277 || || || | || || | | | || |||||| ||| ||||| |||||| |||| || Sbjct 3406 GCACGGGAAACCGATATCACCAGCCGGAATGCCGTTAATCATCCTGGCTTTATGCCAGTT 3347 Query 13278 ATCCCTCTGAAGGTGCCAGTGCAATGAACGATAACGTCACGCTACGGGTAAATGGCCGGG 13337 | ||| ||| || || | |||| || |||| | | || || || || || | Sbjct 3346 AAACCTTTGAGAGTACCCGCAAGATGAGTAATCACGTGATATTGCGCGTCAACGGGCGCG 3287 Query 13338 AGTGGAATGGCTGGACATCGGTGCGCATCGGTGCCGGTGTTGAACGACTGGCGCGGGATT 13397 | ||| ||||||||| ||| | || || || | || ||||| | || |||| Sbjct 3286 AATGGGGGGGCTGGACACGGGTACAGATTTCAGCAGGCATAGAGCGACTCTCACGCGATT 3227 Query 13398 TCAGTGTGGAGATCACCCGCCAGTGGCCGGGAG-ATGAGG-GTATCACCACGCTTCAGCC 13455 ||| ||| || ||||||||||| |||| || | || ||| | || || | ||||| Sbjct 3226 TCAATGTAGAAATCACCCGCCAATGGCTTGGTGAATCAGGAAGAGTAC--CGTTACAGCC 3169 Query 13456 GCGCATTAAAAACGGTTCAAAAGTGGAGGTGCTGATTGGTGATGAGCTGGTGATCACCGG 13515 | |||||||| ||| | || || || || || ||| | || || | ||||| Sbjct 3168 CAGAATTAAAAAAGGTGAACTTGTCGAAGTCCTCATCGGTCAGGATAAAGTCCTAACCGG 3109 Query 13516 CTGGGTGGAGGCGACGCCCGTTCGTTACGATGC 13548 |||| | || || || || | ||||| ||||| Sbjct 3108 CTGGATTGAAGCCACACCGATACGTTATGATGC 3076 Score = 100 bits (110), Expect = 8e-17 Identities = 91/115 (79%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 14091 TTGAAGCCCGGCAACGGGCGGCGCGGACGGATGAAACCACCTATGTGGTGCAGGGCTGGC 14150 ||||||| | |||||||| || | || || |||||||||||| || |||||||||| Sbjct 2400 TTGAAGCACAACAACGGGCCGCCAGAACCGAAGAAACCACCTATACCGTACAGGGCTGGC 2341 Query 14151 GACAGGGTAACGGTACGCTGTGGCAGCCCAACCAGCGGGTGATTGTCTTTGATCC 14205 | || ||| |||| | |||||| | || |||||||| |||||||||||||| || Sbjct 2340 GGCAAGGTGACGGCAGTCTGTGGAAACCTAACCAGCGCGTGATTGTCTTTGACCC 2286 Score = 87.8 bits (96), Expect = 5e-13 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 14993 CCGCGCCGTGGTGATTTCCCTGTTTACCTGGCGGCGTGCGGAGCCTGATGACAACGCCGA 15052 ||| |||||| | || || || || |||||||| ||||| ||||| ||||| || |||| Sbjct 1436 CCGTGCCGTGATTATCTCGCTATTCACCTGGCGACGTGCTGAGCCGGATGATGACACCGA 1377 Query 15053 CGTCCCGATGGGATGGTGGGGGGATACCTGGCCTGCGGTACAGAATGACCG 15103 ||| | ||||||||||| ||||||||||| | ||||| || ||||| Sbjct 1376 TACGCCGTTCGGATGGTGGGGTGATACCTGGCCGACCGTACAAAACGACCG 1326 >seq731 Length=3676 Score = 113 bits (124), Expect = 1e-20 Identities = 152/211 (72%), Gaps = 8/211 (4%) Strand=Plus/Minus Query 6584 GGCAACAATGACGACTTCCTTTTTGCACGTTGATTTTCAGCAGCCTGCGGAGATGCGCTT 6643 |||| ||||| ||||| ||| ||| ||||||||||||||||| || | ||| || || Sbjct 1303 GGCAGCAATGGCGACTCCCTATTTACACGTTGATTTTCAGCAACCGGATGAGTTGGTTTT 1244 Query 6644 TAACCGCGCCCGTGTCCGGCGGGCGTTTGTCACGATTGGTCAGCGTCATATGCGTGATGC 6703 |||||||| | | || ||||||||||| ||||| || ||| |||||||| ||||| Sbjct 1243 CAACCGCGCGAGGTTGCGACGGGCGTTTGTGACGATCGGCCAGGTGCATATGCGCGATGC 1184 Query 6704 CCGTCGGCTGGTGATGCGCCGTGCGCGG----TCGGCACCGGGTGAAAACCCCGGTTATC 6759 || || |||||||| |||||| | ||| ||| || ||||| | || | Sbjct 1183 ACGACGCTTGGTGATG----AAGCGCGGTAAATTAGCAGGGGGAGATAACCCGGCATACC 1128 Query 6760 AGACCGGACGCCTGGCTCGTTCGATTGGTTA 6790 | ||||| ||||||| || |||||||| Sbjct 1127 ACACCGGGAAATTGGCTCGCTCCATTGGTTA 1097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132595800325494