Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq5 190 2e-43 seq45 116 3e-21 seq53 100 2e-16 seq308 91.5 1e-13 seq1 86.0 5e-12 >seq5 Length=4938185 Score = 190 bits (210), Expect = 2e-43 Identities = 251/348 (72%), Gaps = 0/348 (0%) Strand=Plus/Plus Query 34297 TTTTTAGCGGACACGATGAGCTCAGTCTCCGGGTTGTCACATTCCGGACACAACACAAAC 34356 || ||||| || || | || ||||| ||||| || || ||| | ||| || |||||| Sbjct 23699 TTCTTAGCTGAAACTGTAAGTTCAGTTTCCGGATTATCGGATTGAGAACATAAGACAAAC 23758 Query 34357 TTGCGGATGAAACCATCAAGCAGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACG 34416 ||| | || |||||||| || || || ||||| || | | ||||| |||||||| ||| Sbjct 23759 TTGTGTATAAAACCATCGAGTAGATCTTGTAATTTTGCCGCATCGTGAGAGCCGTTAACG 23818 Query 34417 ATGAATCGTTCGTTTTTGTAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTAC 34476 ||||| ||||||||||| ||||| | ||| ||||| | ||||| ||||| | ||||| Sbjct 23819 ATGAAACGTTCGTTTTTCTAATCAAACTGAGTTTGAGTACCCAGTTCGCAACTAAAGTAT 23878 Query 34477 TTTGTCGGGTAAATGGCCGGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATG 34536 || | || ||| |||| || ||||| | || || | ||||| ||| || || || Sbjct 23879 TTGTTTGGATAAGTGGCTGGTCGTCCTATTGCTCGTGCCACTTCGGTCATATTAACTATA 23938 Query 34537 ACAGTCTTGATGCCGTTGCCCTTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAG 34596 | || || ||||| ||| | || | |||||| || || | ||||||||||||||| Sbjct 23939 AACGTTTTAATGCCATTGTCTTTACTTTCGACTTTAGCTTTTAGTCGCGGCATTTTGTAG 23998 Query 34597 CGGTAGAACGCGTCCGCCACATTGCGGTTAACGTTCACAGTCCCCATC 34644 || ||||| || | ||||||||||| || || || | |||||| Sbjct 23999 CGATAGAAAATATCAGTAACATTGCGGTTCACATTAACCGAACCCATC 24046 >seq45 Length=1499061 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34204 GGCGGGTTTTTCAGTATGAAGGTGTTGAGCTTATGCGAGAAGTGTAGCGTGCCGTGATAA 34263 ||||| ||||| | ||||| || || | ||||| || | || || ||| | Sbjct 611264 GGCGGATTTTTTAAAATGAAAGTATTCACTTTATGATTGACCTTAAGTAAACCATGAAAT 611205 Query 34264 CCGCATGCTTTGCAGCCCTGACAGATAATGTTCTTTTTAGCGGACACGATGAGCTCAGTC 34323 || |||||||| || || | ||| | | |||||||| || || | || ||||| Sbjct 611204 CCACATGCTTTACATGATTGCGATATAGTTTGATTTTTAGCTGAAACTGTAAGATCAGTT 611145 Query 34324 TCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCAAGCAGGTCC 34383 ||||| || || ||||| ||||| || ||||| ||||| || ||||||||||| || || Sbjct 611144 TCCGGATTATCGCATTCAGGACATAAGACAAATTTGCGTATAAAACCATCAAGTAGATCT 611085 Query 34384 TGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTT 34430 || || || | | ||||| |||||||| |||||||| |||||||| Sbjct 611084 TGCAATTTTGCCGCATCGTGAGAGCCGTTAACGATGAAACGTTCGTT 611038 Score = 109 bits (120), Expect = 5e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34432 TTGTAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATG 34491 || ||||| | ||| ||||| || ||||| ||||| || ||||| || || || ||| || Sbjct 610942 TTATAATCAAACTGAGTTTGAGCACCCAGTTCGCAACCAAAGTATTTGGTTGGATAAGTG 610883 Query 34492 GCCGGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCG 34551 || || ||||| | || || | ||||| ||| || || || || || || ||||| Sbjct 610882 GCTGGTCGTCCTATTGCTCGTGCCACTTCGGCCATATTAACTATAACCGTTTTAATGCCA 610823 Query 34552 TTGCCCTTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCC 34611 ||||| || |||||||| || || | ||||||||||| || || ||||| || Sbjct 610822 TTGCCTTTACCTTCGACTTTAGCTTGTAGTCGCGGCATTTTATACCGATAGAAAATATCG 610763 Query 34612 GCCACATTGCGGTTAACGTTCACAGTCCCCATC 34644 | ||||| ||||| || || || | |||||| Sbjct 610762 GTAACATTACGGTTTACATTAACCGAACCCATC 610730 >seq53 Length=1361919 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 ||||||||||| || || || || || || |||||||| || || | ||| ||| || Sbjct 1232341 AAAATGCAAATCTTCGTAAAGACATTGACTGGCAAAACAATCACTTTAGAAGTGGAACCA 1232400 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||||| | | | |||||| ||||| ||||||||||| | || ||| Sbjct 1232401 TCTGATACAATTGAAAATGTAAAAGCAAAGATCCAAGACAAAGAAGGTATTCCTCCCGAT 1232460 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || || | | || | ||| || ||||| ||||| |||| | ||| || | |||||| Sbjct 1232461 CAGCAGCGTTTGATCTTTGCTGGCAAACAACTGGAAGATGGGCGCACATTGTCTGATTAC 1232520 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 || || ||||||||||| || |||||| |||| || | ||||| || || Sbjct 1232521 AATATACAAAAAGAATCAACATTGCACTTGGTTCTACGTCTGCGTGGTGG 1232570 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| |||||||| || || || |||||||| || ||| | || |||||| | Sbjct 1232572 ATGCAAATTTTTGTCAAGACATTGACTGGCAAAACTATCACCTTGGAGGTTGAGCCTTCC 1232631 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 |||||| | | | || || |||||| || || ||||| | || |||||| Sbjct 1232632 GATACTATTGAGAATGTTAAGGCTAAGATTCAAGATAAGGAAGGAATCCCACCAGATCAA 1232691 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | | || | || ||||||||| | || || | | ||| || | |||||||| Sbjct 1232692 CAGCGTTTAATCTTCGCTGGTAAACAGTTAGAAGACGGGCGCACATTGTCTGATTACAAT 1232751 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 || ||||| |||||||||||||| |||| ||| | |||| || || Sbjct 1232752 ATACAAAAGGAATCTACGTTGCATTTGGTCTTACGTTTGCGTGGCGG 1232798 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 110267 TTTAAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAG 110326 ||||||||||| || || || || || || || || ||||| | ||| | || ||| Sbjct 1239527 TTTAAAATGCAGATCTTCGTGAAGACATTGACTGGGAAAACTGTCACCTTGGAGGTTGAG 1239586 Query 110327 CCTGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTG 110386 ||| ||||||| | | | || ||| |||||| || || ||||| | || Sbjct 1239587 CCTTCCGATACTATTGAGAATGTTAAAGCTAAGATTCAAGATAAGGAAGGAATCCCACCA 1239646 Query 110387 GATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGAT 110446 ||||||||| | | || | || ||||||||||| || || | | ||| || | ||| Sbjct 1239647 GATCAACAACGTTTAATATTCGCTGGTAAACAGCTAGAAGACGGGCGCACATTGTCTGAT 1239706 Query 110447 TACAACATTCAAAAAGAATCTACGTTGCACATGGTGTT 110484 ||||| || ||||| |||||||||||||| |||| || Sbjct 1239707 TACAATATACAAAAGGAATCTACGTTGCATTTGGTCTT 1239744 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| ||||| |||||||| || |||||||||||||| | || |||||| | Sbjct 1239761 ATGCAAATTTTTGTTAAAACTTTGACTGGCAAAACCATTACTTTGGAGGTAGAGCCTTCC 1239820 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || ||||| | | || ||| ||||| || || ||||| | ||| || || Sbjct 1239821 GACACTGTTGAAAACGTTAAAGCTAAGATCCAAGATAAGGAAGGTATTCCCCCAGACCAG 1239880 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | | || | || |||||||| |||| |||| | || | ||||||||||| Sbjct 1239881 CAGCGTTTGATCTTCGCTGGTAAACAATTGGAAGATGGTCGCACTCTCTCGGATTACAAC 1239940 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTT 110484 || || |||||||| || ||||| | ||||| Sbjct 1239941 ATACAGAAAGAATCAACCTTGCATTTAGTGTT 1239972 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 ||||||||||||||| |||||||| || |||||||||||||| | || || || Sbjct 1240216 AATGCAAATATTTGTTAAAACTTTGACTGGCAAAACCATTACTTTGGAGGTAGAACCATC 1240275 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 |||||| ||| | || || || ||| || |||||||| | || || || Sbjct 1240276 GGATACTATCGAAAACGTTAAGGCAAAAATTCAAGATAAAGAAGGTATTCCTCCAGACCA 1240335 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || | | || | ||| || ||||||||||| || | | || | |||| ||||| Sbjct 1240336 GCAGCGTTTGATCTTTGCTGGCAAACAGCTGGAAGACGGTCGTACTCTCTCGGACTACAA 1240395 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 || || |||||||| || ||||| ||||||| | || || || |||| Sbjct 1240396 TATACAGAAAGAATCAACTTTGCATTTGGTGTTGCGTCTCCGCGGTGGAA 1240445 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| || ||||||||||| ||||| |||||||| || | ||| |||||| | Sbjct 1234236 ATGCAAATCTTCGTCAAAACTTTGACCGGTAAAACCATCACTTTGGAAGTCGAGCCTTCC 1234295 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | || ||| ||||| || || ||||| | ||| || || Sbjct 1234296 GATACCATTGAAAACGTCAAAGCTAAGATCCAGGATAAGGAAGGTATTCCCCCAGACCAG 1234355 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | | || | || |||||||| |||| |||| | | || | | ||||| ||| Sbjct 1234356 CAGCGTTTGATCTTCGCTGGTAAACAATTGGAAGATGGCCGTACTCTCTCCGATTATAAC 1234415 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 |||||||| || ||||| | || |||| ||| | ||||| || || Sbjct 1234416 ATTCAAAAGGAGTCTACTCTCCATTTGGTCTTACGCCTGCGTGGTGG 1234462 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||| |||||||| || || ||||||||||| | ||| || || Sbjct 1239989 ATGCAGATCTTTGTTAAAACTTTGACTGGAAAAACCATTACTTTGGAAGTAGAACCATCG 1240048 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 |||||| ||| | || ||| || ||| || |||||||| | || ||||| Sbjct 1240049 GATACTATCGAAAACGTTAAAGCAAAAATTCAAGATAAAGAAGGTATTCCTCCAGATCAG 1240108 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | | |||| ||| || ||||| | || || | | | || | |||||||||| Sbjct 1240109 CAGCGTTTGATTTTTGCTGGCAAACAATTAGAAGACGGCCGCACTCTTTCGGATTACAAT 1240168 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 | ||||| |||||||| ||||| ||||||| | || || || |||| Sbjct 1240169 GTACAAAAGGAATCTACATTGCATTTGGTGTTGCGTCTCCGTGGTGGAA 1240217 >seq308 Length=190705 Score = 91.5 bits (100), Expect = 1e-13 Identities = 164/239 (69%), Gaps = 3/239 (1%) Strand=Plus/Minus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 || ||||| || ||||| ||||| | || ||||| |||||||| | || ||||| Sbjct 86851 AATATGCAGATTTTTGTAAAAACCCTTACGGGCAAGACCATTACTCTTGAGGTCGAGCCC 86792 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 |||||| | | | || ||| |||||| |||||||| || | || || Sbjct 86791 TCTGATACTATTGAAAATGTGAAAGCCAAGATTCAGGACAAAGAGGGAATTCCACCCGAC 86732 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 |||||| || | || | || || ||||| |||| |||| | ||| | ||||||| Sbjct 86731 CAACAACGATTGATCTTCGCTGGAAAACAATTGGAAGATGGTCGCACATTATCGGATTAT 86672 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG---AAAAAA 110505 || |||||||||||||| ||||| || | ||||| | ||||||| || |||||| Sbjct 86671 AATATTCAAAAAGAATCCACGTTACATCTTGTGTTGCGTTTGCGAGGTGGTGCAAAAAA 86613 >seq1 Length=10097680 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 ||||||||||| || || |||||| | || |||||||| ||||| | ||| |||||| Sbjct 7547386 AAAATGCAAATTTTCGTTAAAACTCTTACTGGCAAAACAATTACTTTGGAAGTTGAGCCT 7547445 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| ||| | | | || || || ||| |||||||| ||| | || ||| Sbjct 7547446 TCCGACACTATTGAAAATGTCAAGGCCAAAATTCAGGACAAAGAGGGCATTCCTCCAGAT 7547505 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || ||| | | || | || || ||||| |||| |||| | || || | |||||| Sbjct 7547506 CAGCAACGTTTGATCTTCGCTGGCAAACAATTGGAAGATGGGCGGACTTTGTCTGATTAC 7547565 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 || || || |||||||| || ||||| |||| | | ||||||| || Sbjct 7547566 AATATACAGAAAGAATCGACATTGCATTTGGTACTTCGTTTGCGAGGTGG 7547615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412833292981943