Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_022749.1 Length=39758 Score E Sequences producing significant alignments: (Bits) Value seq595 154 4e-33 seq731 82.4 2e-11 >seq595 Length=6865 Score = 154 bits (170), Expect = 4e-33 Identities = 324/481 (67%), Gaps = 4/481 (1%) Strand=Plus/Minus Query 8442 TTTGATTATATCGGCCTGCCGTTCAACGACACGGCCTCC--GTTAACACGCTGGTGACCG 8499 ||||||| |||||| || || ||| ||| || | ||| || || | | | | || Sbjct 6619 TTTGATTTTATCGGACTCCCCTTCGGCGATACTGACTCTTTGTAAAAAATCAGCGG--CG 6562 Query 8500 AGATGAACGATACCAGCGGTCGCTGGAGCTATGCGCGTCAGCTGTATGGTCATGTGTATA 8559 ||||||| ||||||||||| ||||||| | || || |||| || ||||| || | Sbjct 6561 AGATGAATGATACCAGCGGGCGCTGGAATCCTTATCGGCAATTGTACGGGCATGTCTACA 6502 Query 8560 CGGCAAAGATCGGCACGCTGTCAGAACTGGTGACCGCAGGTGACCAGTTTAACCAGCAGC 8619 ||||||| | |||||| | | ||||| | || |||| |||||| | | | Sbjct 6501 CGGCAAAAACAGGCACGGTCGCTGAACTTATCGCCTTTGGTGCGGCGTTTAATGATCCAC 6442 Query 8620 ACATTACCCTGGCGGGGTACGAAAAAGACACCCAGACGCCTGCCGATGAGCTGGCGGCAA 8679 || | || | ||||| ||||||| | |||||| | |||||||||| || Sbjct 6441 ACCTCACTATCGCGGGATACGAAACCACTATCCAGACCGCATTAGATGAGCTGGTTGCGG 6382 Query 8680 GCCGTACCGCCCGCGCAGCGGTGTTTATTCGCAACGATCCGGCACGTCCCACGCAGACCG 8739 || || || ||| ||||| | ||||||||||||||| | || || || | || Sbjct 6381 CTCGGCTGGCGCGAAGTGCGATGTTTTTGCGCAACGATCCGGCAAGGCCAACACACAGCG 6322 Query 8740 GTGAGCTGGTGGGTATGCTGCCTGCGCCGAAGGGGAAACGGTTCACGATGACCGAACAAC 8799 | ||| | || | | || || ||| ||| |||| ||||| |||| || || | Sbjct 6321 GCGAGTTAAACGGCGTATTACCCGCCCCGGCGGGTCAACGCTTCACCTTGACGGAGCAGC 6262 Query 8800 AGACCCTGCTGTCTCATGGCGTGGCAACGGCGTATGTCGAAAGCGGGGTACTGCGCATTC 8859 | | || || | || ||| | || || || |||| ||| | || | | |||| |||| Sbjct 6261 AATCGCTCCTTTTTCGTGGTATCGCCACAGCCAATGTAGAAGGTGGCGCATTGCGTATTC 6202 Query 8860 AGCGTGATGTCACCACGTACAGGAAAAACGCTTACGGGGTTGCGGATAACAGCTACCTCG 8919 | ||||| ||||| || |||| ||||||| |||||||||||| ||||| ||||| || | Sbjct 6201 AACGTGACGTCACAACCTACAAGAAAAACAGTTACGGGGTTGCCGATAATAGCTATCTGG 6142 Query 8920 A 8920 | Sbjct 6141 A 6141 Score = 116 bits (128), Expect = 9e-22 Identities = 284/424 (67%), Gaps = 10/424 (2%) Strand=Plus/Minus Query 12037 GCGTCATTTCGCGGCGTGCCGTTTAAGGTTGAAGAAGAAAGTGCGGGAAC---CGGTCGC 12093 || || |||||||||||||||||| |||| ||||| || | ||| || ||| || Sbjct 4609 GCATCCTTTCGCGGCGTGCCGTTTCAGGTGGAAGACGAC---GAGGGGACTTTCGGACGG 4553 Query 12094 CGTGTGGAAACACATGAATACCCGAACCGCGACAAACCCTATACCGAAGACCTGGGGAAA 12153 || || || ||||||||||| ||| | || || |||||||||||||| ||||| Sbjct 4552 CGGGTACAAGTTCATGAATACCCCAACAGGGATAAGCCCTATACCGAAGATCTGGGACGC 4493 Query 12154 ATCACTTTTCGCCCGTCCATCACGGCTTATGTGGTGGGAGATGACTGCTTTGACCAGCGC 12213 ||| || | |||| || ||| || | || |||| | ||| || | | Sbjct 4492 GCCACACGACGATTTACTATCAACGCCTATCTGATCGGTAATGATTTCTTCGAGGACAGA 4433 Query 12214 GATCGCCTGATTGACGCGCTGAATAAACCCGGTCCCGGCACGCTTGTCCATCCGACATAC 12273 ||||| || |||| || | ||| || || || || ||||| || ||||| ||| Sbjct 4432 GATCGTCTCATTGTGGCTATTGATACGCCAGGGCCGGGAACGCTGGTACATCCCTACTAC 4373 Query 12274 GGTGAGCTGAAAGTCTGTGTTGACGGAGAAGTTCGGGTCAGCACATCGAAGA-GTGAAGG 12332 ||||| | |||||| ||||||| ||||| | || ||| ||| | || | || || Sbjct 4372 GGTGAAATAGCTGTCTGTATTGACGGTGAAGTGAGAGTAAGC-CATAGCGGACGCGATGG 4314 Query 12333 GCGTAT-TGTCCGCTTTGACCTGAAGTTTGTCGAAGCGGGAGAACTCTCTTACCCCACAT 12391 | || ||| ||| | | | || | || || || || || || |||| ||| ||| Sbjct 4313 CAGGATGTGT-CGCGTCAGCTTTAACGTAGTTGAGGCTGGCGAGCTTTCTTTCCCAACAG 4255 Query 12392 CAGGTGCGGCGACGGCGCAGACGCTGATGTCATCCTGTTCTGCACTGGATGACTGCATCA 12451 |||||| ||||||| || ||||| || || ||| |||| || || | || |||| Sbjct 4254 CAGGTGTTGCGACGGGACAAACGCTAATTTCTTCCAGTTCAGCCTTGAACGATCGCATTG 4195 Query 12452 GTGA 12455 |||| Sbjct 4194 GTGA 4191 Score = 104 bits (114), Expect = 6e-18 Identities = 261/393 (66%), Gaps = 4/393 (1%) Strand=Plus/Minus Query 13192 CGCACACCGGATGAGGTTTTACCCGCGCTGGTGCTGGCGGCGACCTGGTTTGATAACGCG 13251 || || || || | ||| ||||||| ||||| ||||| || | |||| ||| || ||| Sbjct 3466 CGTACGCCAGAGGCGGTGCTACCCGCACTGGTTCTGGCCGCCAAGTGGTATGACAATGCG 3407 Query 13252 GCGCGTGACGCGGACATTATCCGGCGTAATGCCATTACGCATCCCGGCTTTGTGCCGGTG 13311 || || || | || || | | | || |||||| ||| ||||| |||||| |||| || Sbjct 3406 GCACGGGAAACCGATATCACCAGCCGGAATGCCGTTAATCATCCTGGCTTTATGCCAGTT 3347 Query 13312 ATCCCTCTGAAGGTGCCAGTGCAATGAACGACAATGTCACGCTACGGGTAAATGGCCGGG 13371 | ||| ||| || || | |||| | | || | | || || || || || | Sbjct 3346 AAACCTTTGAGAGTACCCGCAAGATGAGTAATCACGTGATATTGCGCGTCAACGGGCGCG 3287 Query 13372 AGTGGAATGGCTGGACATCGGTGCGCATCGGTGCCGGTATTGAACGGCTGGCGCGGGATT 13431 | ||| ||||||||| ||| | || || || || || || || | || |||| Sbjct 3286 AATGGGGGGGCTGGACACGGGTACAGATTTCAGCAGGCATAGAGCGACTCTCACGCGATT 3227 Query 13432 TCAGTGTGGAGATCACCCGCCAGTGGCCGGGAG-ATGAGG-GTATTACCACGCTTCAGCC 13489 ||| ||| || ||||||||||| |||| || | || ||| | ||| || | ||||| Sbjct 3226 TCAATGTAGAAATCACCCGCCAATGGCTTGGTGAATCAGGAAGAGTAC--CGTTACAGCC 3169 Query 13490 GCGCATTAAAAACGGTTCAAAAGTGGAGGTGCTGATTGGTGATGAGCTGGTGATCACCGG 13549 | |||||||| ||| | || || || || || ||| | || || | ||||| Sbjct 3168 CAGAATTAAAAAAGGTGAACTTGTCGAAGTCCTCATCGGTCAGGATAAAGTCCTAACCGG 3109 Query 13550 CTGGGTGGAGGCGACGCCCGTTCGTTACGATGC 13582 |||| | || || || || | ||||| ||||| Sbjct 3108 CTGGATTGAAGCCACACCGATACGTTATGATGC 3076 Score = 100 bits (110), Expect = 7e-17 Identities = 91/115 (79%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 14125 TTGAAGCCCGGCAACGGGCGGCGCGGACGGATGAAACCACCTATGTGGTGCAGGGCTGGC 14184 ||||||| | |||||||| || | || || |||||||||||| || |||||||||| Sbjct 2400 TTGAAGCACAACAACGGGCCGCCAGAACCGAAGAAACCACCTATACCGTACAGGGCTGGC 2341 Query 14185 GACAGGGTAACGGTACGCTGTGGCAGCCCAACCAGCGGGTGATTGTCTTTGATCC 14239 | || ||| |||| | |||||| | || |||||||| |||||||||||||| || Sbjct 2340 GGCAAGGTGACGGCAGTCTGTGGAAACCTAACCAGCGCGTGATTGTCTTTGACCC 2286 Score = 84.2 bits (92), Expect = 6e-12 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 15027 CCGCGCCGTGGTGATTTCCCTGTTTACCTGGCGGCGGGCGGAGCCTGATGACAACGCCGA 15086 ||| |||||| | || || || || |||||||| || || ||||| ||||| || |||| Sbjct 1436 CCGTGCCGTGATTATCTCGCTATTCACCTGGCGACGTGCTGAGCCGGATGATGACACCGA 1377 Query 15087 CGTCCCGATGGGATGGTGGGGGGATACCTGGCCTGCGGTACAGAATGACCG 15137 ||| | ||||||||||| ||||||||||| | ||||| || ||||| Sbjct 1376 TACGCCGTTCGGATGGTGGGGTGATACCTGGCCGACCGTACAAAACGACCG 1326 >seq731 Length=3676 Score = 82.4 bits (90), Expect = 2e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 6546 TTTACACGTTGATTTCAAACAACCGGAGGAGATGGAGTTTAACCGTGCCAGGCTCCGAAG 6605 ||||||||||||||| | |||||||| ||| ||| || ||||| || ||| | ||| | Sbjct 1282 TTTACACGTTGATTTTCAGCAACCGGATGAGTTGGTTTTCAACCGCGCGAGGTTGCGACG 1223 Query 6606 GGCATTTGTTCAAATCGGGCGTGTCTATATGCGTGATGCCCGGCGGCTGGTGATG 6660 ||| ||||| ||||| | || ||||||| ||||| || || |||||||| Sbjct 1222 GGCGTTTGTGACGATCGGCCAGGTGCATATGCGCGATGCACGACGCTTGGTGATG 1168 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127101508046640