Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq53 102 7e-17 >seq53 Length=1361919 Score = 102 bits (112), Expect = 7e-17 Identities = 176/255 (69%), Gaps = 7/255 (3%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || ||||| |||||||| || || ||||||||||| | ||| || | Sbjct 1239989 ATGCAGATCTTTGTTAAAACTTTGACTGGAAAAACCATTACTTTGGAAGTAGAACCATCG 1240048 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 |||||| ||| | || ||| ||| ||| ||||||||||| | || |||||| Sbjct 1240049 GATACTATCGAAAACGTTAAAGCAAAAATTCAAGATAAAGAAGGTATTCCTCCAGATCAG 1240108 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | | |||| ||| || ||||| | || |||| | || | |||| ||||| Sbjct 1240109 CAGCGTTTGATTTTTGCTGGCAAACAATTAGAAGACGGCCGCACTCTTTCGGATTACAAT 1240168 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAAATAATAAAAAT 107795 | |||||||| ||||| ||||| |||||||| | | || || || ||| |||| Sbjct 1240169 GTACAAAAGGAATCTACATTGCATTTGGTGTTGCGTCTCCGTGGTGG----AATGCAAAT 1240224 Query 107796 ATTTGTATTTAAAAC 107810 ||||| ||||||| Sbjct 1240225 ATTTG---TTAAAAC 1240236 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||||||||||||||| || || || |||||||| || ||| | || ||| || | Sbjct 1232572 ATGCAAATTTTTGTCAAGACATTGACTGGCAAAACTATCACCTTGGAGGTTGAGCCTTCC 1232631 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 |||||| | | | || || |||||| ||||| ||||| | || ||||| Sbjct 1232632 GATACTATTGAGAATGTTAAGGCTAAGATTCAAGATAAGGAAGGAATCCCACCAGATCAA 1232691 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | | || | || ||||||||| | || |||| ||| || | || ||||| Sbjct 1232692 CAGCGTTTAATCTTCGCTGGTAAACAGTTAGAAGACGGGCGCACATTGTCTGATTACAAT 1232751 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 || |||||||| ||||||||||| |||| || | ||||| || || Sbjct 1232752 ATACAAAAGGAATCTACGTTGCATTTGGTCTTACGTTTGCGTGGCGG 1232798 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||||||||| |||||||| || |||||||||||||| | || ||| || | Sbjct 1239761 ATGCAAATTTTTGTTAAAACTTTGACTGGCAAAACCATTACTTTGGAGGTAGAGCCTTCC 1239820 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || ||||| | | || ||| ||||| ||||| ||||| | ||| || ||| Sbjct 1239821 GACACTGTTGAAAACGTTAAAGCTAAGATCCAAGATAAGGAAGGTATTCCCCCAGACCAG 1239880 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | | || | || |||||||| |||| || | || | |||| |||||| Sbjct 1239881 CAGCGTTTGATCTTCGCTGGTAAACAATTGGAAGATGGTCGCACTCTCTCGGATTACAAC 1239940 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 || || || || || || ||||| | |||||| | ||||| || || Sbjct 1239941 ATACAGAAAGAATCAACCTTGCATTTAGTGTTGCGTTTGCGCGGTGG 1239987 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 ||||||||| ||||| |||||||| || |||||||||||||| | || || | Sbjct 1240216 AATGCAAATATTTGTTAAAACTTTGACTGGCAAAACCATTACTTTGGAGGTAGAACCATC 1240275 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 |||||| ||| | || || ||| ||| ||||||||||| | || || || Sbjct 1240276 GGATACTATCGAAAACGTTAAGGCAAAAATTCAAGATAAAGAAGGTATTCCTCCAGACCA 1240335 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| | | || | ||| || ||||||||||| |||| || | |||||||||| Sbjct 1240336 GCAGCGTTTGATCTTTGCTGGCAAACAGCTGGAAGACGGTCGTACTCTCTCGGACTACAA 1240395 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784 || || || || || || ||||| |||||||| | | || || |||| Sbjct 1240396 TATACAGAAAGAATCAACTTTGCATTTGGTGTTGCGTCTCCGCGGTGGAA 1240445 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 107550 TTTAAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG 107609 ||||||||||| || || || || || || || || ||||| | ||| | || ||| Sbjct 1239527 TTTAAAATGCAGATCTTCGTGAAGACATTGACTGGGAAAACTGTCACCTTGGAGGTTGAG 1239586 Query 107610 GCTGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTG 107669 || ||||||| | | | || ||| |||||| ||||| ||||| | || Sbjct 1239587 CCTTCCGATACTATTGAGAATGTTAAAGCTAAGATTCAAGATAAGGAAGGAATCCCACCA 1239646 Query 107670 GATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGAC 107729 ||||| || | | || | || ||||||||||| || |||| ||| || | || Sbjct 1239647 GATCAACAACGTTTAATATTCGCTGGTAAACAGCTAGAAGACGGGCGCACATTGTCTGAT 1239706 Query 107730 TACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||||| || |||||||| ||||||||||| |||| ||| | ||||| || || Sbjct 1239707 TACAATATACAAAAGGAATCTACGTTGCATTTGGTCTTGCGTTTGCGTGGTGG 1239759 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398868773975539