Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq53 127 3e-24 seq1 127 3e-24 seq308 125 1e-23 >seq53 Length=1361919 Score = 127 bits (140), Expect = 3e-24 Identities = 155/209 (74%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAAC-ATAAC 146090 ||||||| || ||||||| || || || ||| | |||||| | || ||||||| || | Sbjct 1241336 TGCAAATCTTTGTAAAAACTTTGACTGGCAAATCCATTACTTTGGAGGTAGAACCATCA- 1241394 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 |||||||| |||| || ||| ||||| ||| ||||||||| ||||| || ||||| Sbjct 1241395 GATACTATCGAAAACGTTAAAGCAAAAATTCAAGATAAAGAAGGTATTCCTCCAGATCAG 1241454 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 || | | || ||||| || ||||||||||| || | | || | | ||||| ||| Sbjct 1241455 CAGCGTTTGATCTTTGCTGGCAAACAATTAGAAGACGGTCGCACTCTTTCGGATTACAAT 1241514 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGT 146239 ||||| |||||||| ||| | ||||| || Sbjct 1241515 ATACAGAAAGAATCAACTTTGCATTTGGT 1241543 Score = 125 bits (138), Expect = 1e-23 Identities = 156/214 (73%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| |||| ||||| || || |||||||| ||| | || || |||| | Sbjct 1232345 TGCAAATCTTCGTAAAGACATTGACTGGCAAAACAATCACTTTAGAAGTGGAACCATCTG 1232404 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| ||||||||||| || || ||| |||||||| ||||| |||||||| | Sbjct 1232405 ATACAATTGAAAATGTAAAAGCAAAGATCCAAGACAAAGAAGGTATTCCTCCCGATCAGC 1232464 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | | | || ||||| || |||||| | || ||| | || || | ||||| |||| Sbjct 1232465 AGCGTTTGATCTTTGCTGGCAAACAACTGGAAGATGGGCGCACATTGTCTGATTACAATA 1232524 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACG 146245 ||||||||||||| || | || || || |||| Sbjct 1232525 TACAAAAAGAATCAACATTGCACTTGGTTCTACG 1232558 Score = 116 bits (128), Expect = 6e-21 Identities = 154/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | ||||| || || |||||||| |||||| | || ||||||| | Sbjct 1239990 TGCAGATCTTTGTTAAAACTTTGACTGGAAAAACCATTACTTTGGAAGTAGAACCATCGG 1240049 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 ||||||| |||| || ||| ||||| ||| ||||||||| ||||| || ||||| | Sbjct 1240050 ATACTATCGAAAACGTTAAAGCAAAAATTCAAGATAAAGAAGGTATTCCTCCAGATCAGC 1240109 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | | | |||||||| || ||||||||||| || | || | | ||||| ||| Sbjct 1240110 AGCGTTTGATTTTTGCTGGCAAACAATTAGAAGACGGCCGCACTCTTTCGGATTACAATG 1240169 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACG 146245 ||||||| ||||| || | ||||| || || || Sbjct 1240170 TACAAAAGGAATCTACATTGCATTTGGTGTTGCG 1240203 Score = 116 bits (128), Expect = 6e-21 Identities = 154/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | ||||| || || || ||||| |||||| | || ||||| | | Sbjct 1241564 TGCAAATCTTTGTTAAAACTTTGACTGGCAAAACTATTACTTTGGAGGTAGAGCCGTCGG 1241623 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 ||||||| ||| || ||| ||||| ||| ||| ||||| ||| | |||||||||| Sbjct 1241624 ATACTATCGAAACGGTTAAAGCAAAAATCCAAGATAAGGAAGGTATTTCTCCCGATCAAC 1241683 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | | | || ||||| || |||||||| || || | || | | ||||| |||| Sbjct 1241684 AGCGTTTGATCTTTGCTGGCAAACAATTGGAAGACGGGCGCACTCTGTCCGATTAAAATA 1241743 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACG 146245 | ||||||||||| || |||||||||| ||||| Sbjct 1241744 TCCAAAAAGAATCAACACTCCATTTAGTCTTACG 1241777 Score = 114 bits (126), Expect = 2e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | || ||||| || || ||||| || || | || || || | | || Sbjct 1232573 TGCAAATTTTTGTCAAGACATTGACTGGCAAAACTATCACCTTGGAGGTTGAGCCTTCCG 1232632 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||||||| | ||||| || ||| || ||| ||| ||||| || ||||| ||||||| Sbjct 1232633 ATACTATTGAGAATGTTAAGGCTAAGATTCAAGATAAGGAAGGAATCCCACCAGATCAAC 1232692 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | | | || || || |||||||| ||||| || | || || | ||||| |||| Sbjct 1232693 AGCGTTTAATCTTCGCTGGTAAACAGTTAGAAGACGGGCGCACATTGTCTGATTACAATA 1232752 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 ||||||| ||||| || | ||||| || ||||| || | || |||| Sbjct 1232753 TACAAAAGGAATCTACGTTGCATTTGGTCTTACGTTTGCGTGGCGGTA 1232800 Score = 113 bits (124), Expect = 7e-20 Identities = 155/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | ||||| || || || ||||| |||||| | || ||||| | | || Sbjct 1239762 TGCAAATTTTTGTTAAAACTTTGACTGGCAAAACCATTACTTTGGAGGTAGAGCCTTCCG 1239821 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | ||| || |||| || ||| ||| || ||| ||| ||||| ||||| || || || | Sbjct 1239822 ACACTGTTGAAAACGTTAAAGCTAAGATCCAAGATAAGGAAGGTATTCCCCCAGACCAGC 1239881 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | | | || || || ||||||||||| || ||| | | || | | ||||| || | Sbjct 1239882 AGCGTTTGATCTTCGCTGGTAAACAATTGGAAGATGGTCGCACTCTCTCGGATTACAACA 1239941 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATT 146248 |||| |||||||| || | |||||||| || || || Sbjct 1239942 TACAGAAAGAATCAACCTTGCATTTAGTGTTGCGTTT 1239978 Score = 109 bits (120), Expect = 9e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| | || ||||| || || ||||| | || | || || || | | || Sbjct 1239534 TGCAGATCTTCGTGAAGACATTGACTGGGAAAACTGTCACCTTGGAGGTTGAGCCTTCCG 1239593 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||||||| | ||||| ||| ||| || ||| ||| ||||| || ||||| ||||||| Sbjct 1239594 ATACTATTGAGAATGTTAAAGCTAAGATTCAAGATAAGGAAGGAATCCCACCAGATCAAC 1239653 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | || || || |||||||| |||| || | || || | ||||| |||| Sbjct 1239654 AACGTTTAATATTCGCTGGTAAACAGCTAGAAGACGGGCGCACATTGTCTGATTACAATA 1239713 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 ||||||| ||||| || | ||||| || || || || | || |||| Sbjct 1239714 TACAAAAGGAATCTACGTTGCATTTGGTCTTGCGTTTGCGTGGTGGTA 1239761 Score = 107 bits (118), Expect = 3e-18 Identities = 152/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | ||||| || || || ||||| || ||| | || || || | | || Sbjct 1234237 TGCAAATCTTCGTCAAAACTTTGACCGGTAAAACCATCACTTTGGAAGTCGAGCCTTCCG 1234296 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| |||| || ||| ||| || || ||| ||||| ||||| || || || | Sbjct 1234297 ATACCATTGAAAACGTCAAAGCTAAGATCCAGGATAAGGAAGGTATTCCCCCAGACCAGC 1234356 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | | | || || || ||||||||||| || ||| | || | | |||||||| | Sbjct 1234357 AGCGTTTGATCTTCGCTGGTAAACAATTGGAAGATGGCCGTACTCTCTCCGATTATAACA 1234416 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACG 146245 | ||||| || || ||| ||||||| || ||||| Sbjct 1234417 TTCAAAAGGAGTCTACTCTCCATTTGGTCTTACG 1234450 >seq1 Length=10097680 Score = 127 bits (140), Expect = 3e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | ||||| | || || |||||||||||| | || || || | | || Sbjct 7547390 TGCAAATTTTCGTTAAAACTCTTACTGGCAAAACAATTACTTTGGAAGTTGAGCCTTCCG 7547449 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | |||||| ||||||| || ||||| || ||||| |||||||| || ||||| | Sbjct 7547450 ACACTATTGAAAATGTCAAGGCCAAAATTCAGGACAAAGAGGGCATTCCTCCAGATCAGC 7547509 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | || || || || |||||||| || ||| | || || | ||||| |||| Sbjct 7547510 AACGTTTGATCTTCGCTGGCAAACAATTGGAAGATGGGCGGACTTTGTCTGATTACAATA 7547569 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 |||| ||||||||||| | ||||| ||| | || || |||| |||| Sbjct 7547570 TACAGAAAGAATCGACATTGCATTTGGTACTTCGTTTGCGAGGTGGTA 7547617 >seq308 Length=190705 Score = 125 bits (138), Expect = 1e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || ||||||| | || || || || |||||| |||| || || | | Sbjct 86847 TGCAGATTTTTGTAAAAACCCTTACGGGCAAGACCATTACTCTTGAGGTCGAGCCCTCTG 86788 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||||||| ||||||| ||| || || || ||||| || ||||||||||| |||| Sbjct 86787 ATACTATTGAAAATGTGAAAGCCAAGATTCAGGACAAAGAGGGAATTCCACCCGACCAAC 86728 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || || | || || || || |||||||| || ||| | | || ||| | |||||||||| Sbjct 86727 AACGATTGATCTTCGCTGGAAAACAATTGGAAGATGGTCGCACATTATCGGATTATAATA 86668 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGT 146258 | ||||||||||| || | ||| | || || || || |||| ||| Sbjct 86667 TTCAAAAAGAATCCACGTTACATCTTGTGTTGCGTTTGCGAGGTGGT 86621 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786150175490920