Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq308 176 3e-39 seq53 170 1e-37 seq1 161 8e-35 seq141 100 2e-16 >seq308 Length=190705 Score = 176 bits (194), Expect = 3e-39 Identities = 179/231 (77%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | |||||||| ||| | ||| | |||||||||||||||||| |||||||||| Sbjct 86622 CCACCTCGCAAACGCAACACAAGATGTAACGTGGATTCTTTTTGAATATTATAATCCGAT 86681 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || | |||||| ||||| | ||||||| ||| || || || ||| Sbjct 86682 AATGTGCGACCATCTTCCAATTGTTTTCCAGCGAAGATCAATCGTTGTTGGTCGGGTGGA 86741 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || ||||||||||| || ||| || | ||| ||| |||| | ||| ||||| | || || Sbjct 86742 ATTCCCTCTTTGTCCTG-AATCTTGGCTTTCACATTTTCAATAGTATCAGAGGGCTCGAC 86800 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 |||||||| || || ||||| || | |||||| ||||| |||||||| || Sbjct 86801 CTCAAGAGTAATGGTCTTGCCCGTAAGGGTTTTTACAAAAATCTGCATATT 86851 >seq53 Length=1361919 Score = 170 bits (188), Expect = 1e-37 Identities = 170/218 (78%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||||||||||||||| | || |||||||| || || || ||||||| || |||||| Sbjct 1241550 ACGCAGCACCAAATGCAAAGTTGATTCTTTCTGTATATTGTAATCCGAAAGAGTGCGACC 1241491 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || || | ||||||||||||| | ||||| | |||||||| || |||||||| ||||| Sbjct 1241490 GTCTTCTAATTGTTTGCCAGCAAAGATCAAACGCTGCTGATCTGGAGGAATACCTTCTTT 1241431 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 ||||| |||||||| ||| || |||| | ||| || || ||||||| || | ||| | Sbjct 1241430 ATCTTG-AATTTTTGCTTTAACGTTTTCGATAGTATCTGATGGTTCTACCTCCAAAGTAA 1241372 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 | | ||||||||| || ||||| ||||| || |||||| Sbjct 1241371 TGGATTTGCCAGTCAAAGTTTTTACAAAGATTTGCATT 1241334 Score = 168 bits (186), Expect = 5e-37 Identities = 169/217 (78%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||||| ||||||||| | || ||||| ||||| | || ||||||| || ||||| Sbjct 1240204 ACGCAACACCAAATGCAATGTAGATTCCTTTTGTACATTGTAATCCGAAAGAGTGCGGCC 1240145 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || || | ||||||||||||| | ||||| | |||||||| || |||||||| ||||| Sbjct 1240144 GTCTTCTAATTGTTTGCCAGCAAAAATCAAACGCTGCTGATCTGGAGGAATACCTTCTTT 1240085 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 ||||| |||||||| ||| || |||| | ||| || || |||||||||| | ||| | Sbjct 1240084 ATCTTG-AATTTTTGCTTTAACGTTTTCGATAGTATCCGATGGTTCTACTTCCAAAGTAA 1240026 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | ||||| ||||| || ||||||||||| |||||||| Sbjct 1240025 TGGTTTTTCCAGTCAAAGTTTTAACAAAGATCTGCAT 1239989 Score = 161 bits (178), Expect = 8e-35 Identities = 176/231 (76%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG-C 29618 || || | || ||| || ||||| || | || ||||||||||| || || ||||| | | Sbjct 1232570 CCACCACGCAGACGTAGAACCAAGTGCAATGTTGATTCTTTTTGTATATTGTAATCAGAC 1232511 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 |||| |||| ||| || ||||||||||||||| | ||||| | |||||||| || || Sbjct 1232510 AATG-TGCGCCCATCTTCCAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGATCGGGAGG 1232452 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 |||||| ||||||||||| | ||| ||| ||| |||| | || ||||| |||| || Sbjct 1232451 AATACCTTCTTTGTCTTGGATCTTTGCTTTTACATTTTCAATTGTATCAGATGGTTCCAC 1232392 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 ||| | ||| || ||||||||||| || || || || || || |||||||| Sbjct 1232391 TTCTAAAGTGATTGTTTTGCCAGTCAATGTCTTTACGAAGATTTGCATTTT 1232341 Score = 158 bits (174), Expect = 9e-34 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | |||||||| ||| ||||| | || |||||||| || ||||| ||||||| Sbjct 1239987 CCACCGCGCAAACGCAACACTAAATGCAAGGTTGATTCTTTCTGTATGTTGTAATCCGAG 1239928 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || | |||||| ||||| | ||||| | ||||| || || ||| Sbjct 1239927 AGAGTGCGACCATCTTCCAATTGTTTACCAGCGAAGATCAAACGCTGCTGGTCTGGGGGA 1239868 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 ||||| || || ||||| | || ||| || |||| |||||||| ||| | ||||| Sbjct 1239867 ATACCTTCCTTATCTTGGATCTTAGCTTTAACGTTTTCAACAGTGTCGGAAGGCTCTACC 1239808 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || | ||| || ||||||||||| || ||||||||||| || ||||| Sbjct 1239807 TCCAAAGTAATGGTTTTGCCAGTCAAAGTTTTAACAAAAATTTGCAT 1239761 Score = 156 bits (172), Expect = 3e-33 Identities = 167/218 (77%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||||| ||||||||| | || |||||||| || || || || |||| | || ||| Sbjct 1240432 ACGCAACACCAAATGCAAAGTTGATTCTTTCTGTATATTGTAGTCCGAGAGAGTACGACC 1240373 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || || || |||||||||||| | ||||| | ||||| || || |||||||| ||||| Sbjct 1240372 GTCTTCCAGCTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCTTT 1240313 Query 29691 GTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 ||||| |||||||| || || |||| | ||| || || ||||||| || | ||| | Sbjct 1240312 ATCTTG-AATTTTTGCCTTAACGTTTTCGATAGTATCCGATGGTTCTACCTCCAAAGTAA 1240254 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 | ||||||||||| || |||||||||||||| |||||| Sbjct 1240253 TGGTTTTGCCAGTCAAAGTTTTAACAAATATTTGCATT 1240216 Score = 145 bits (160), Expect = 6e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| | | ||| | || ||||| || || ||||||||||| || || ||||| | Sbjct 1241789 CCTCCGCGAAGACGTAAGACTAAATGGAGTGTTGATTCTTTTTGGATATTTTAATCGGAC 1241730 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||| || || | ||||||||||||| | ||||| | || ||||| || | | Sbjct 1241729 AGAGTGCGCCCGTCTTCCAATTGTTTGCCAGCAAAGATCAAACGCTGTTGATCGGGAGAA 1241670 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 ||||| || || ||||| | |||| ||| || ||||| | ||| || || | ||||| Sbjct 1241669 ATACCTTCCTTATCTTGGATTTTTGCTTTAACCGTTTCGATAGTATCCGACGGCTCTACC 1241610 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || | ||| |||||||||||||| || ||||||||||| || |||||| Sbjct 1241609 TCCAAAGTAATAGTTTTGCCAGTCAAAGTTTTAACAAAGATTTGCATT 1241562 Score = 125 bits (138), Expect = 6e-24 Identities = 172/235 (73%), Gaps = 4/235 (2%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG-C 29618 || || | |||||||| |||||||| | ||| ||||| ||||| || || ||||| | | Sbjct 1239759 CCACCACGCAAACGCAAGACCAAATGCAACGTAGATTCCTTTTGTATATTGTAATCAGAC 1239700 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 |||| |||| || || || ||||| ||||| |||| || | ||| ||||| || || Sbjct 1239699 AATG-TGCGCCCGTCTTCTAGCTGTTTACCAGCGAATATTAAACGTTGTTGATCTGGTGG 1239641 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 || || || || ||||| ||| || | ||| ||| | || | ||| || ||| | || | Sbjct 1239640 GATTCCTTCCTTATCTTG-AATCTTAGCTTTAACATTCTCAATAGTATCGGAAGGCTCAA 1239582 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTTAAA 29792 | || | || | |||||| ||||| || || || || || |||||||||||||| Sbjct 1239581 CCTCCAAGGTGACAGTTTTCCCAGTCAATGTCTTCACGAAGATCTGCATTTTAAA 1239527 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCG 29637 |||||||| || || || || ||||||||||||||||| | | || || ||| || Sbjct 1234444 ACCAAATGGAGAGTAGACTCCTTTTGAATGTTATAATCGGAGAGAGTACGGCCATCTTCC 1234385 Query 29638 AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGT 29697 | |||||| ||||| | ||||| | ||||| || || |||||||| || || || || Sbjct 1234384 AATTGTTTACCAGCGAAGATCAAACGCTGCTGGTCTGGGGGAATACCTTCCTTATCCTGG 1234325 Query 29698 AATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTG 29757 | || |||||| |||| | || || ||| | || ||||| | ||| || ||||| Sbjct 1234324 ATCTTAGCTTTGACGTTTTCAATGGTATCGGAAGGCTCGACTTCCAAAGTGATGGTTTTA 1234265 Query 29758 CCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || ||||| || || || ||||| Sbjct 1234264 CCGGTCAAAGTTTTGACGAAGATTTGCAT 1234236 Score = 102 bits (112), Expect = 6e-17 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG-C 29618 || || | |||||| | |||||||| | ||| ||||| ||||| || || ||||| | | Sbjct 1232798 CCGCCACGCAAACGTAAGACCAAATGCAACGTAGATTCCTTTTGTATATTGTAATCAGAC 1232739 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 |||| |||| || || | ||||| ||||| | || || | || ||||| || || Sbjct 1232738 AATG-TGCGCCCGTCTTCTAACTGTTTACCAGCGAAGATTAAACGCTGTTGATCTGGTGG 1232680 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 || || || || ||||| ||| || | || ||| | || | ||| || ||| | || | Sbjct 1232679 GATTCCTTCCTTATCTTG-AATCTTAGCCTTAACATTCTCAATAGTATCGGAAGGCTCAA 1232621 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || | || |||||||||||||| || || || ||||| || ||||| Sbjct 1232620 CCTCCAAGGTGATAGTTTTGCCAGTCAATGTCTTGACAAAAATTTGCAT 1232572 >seq1 Length=10097680 Score = 161 bits (178), Expect = 8e-35 Identities = 176/231 (76%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | |||||| || |||||||| | || |||||||| || || || ||||| | Sbjct 7547615 CCACCTCGCAAACGAAGTACCAAATGCAATGTCGATTCTTTCTGTATATTGTAATCAGAC 7547556 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || || ||| || | |||||||||||| | ||||| | ||||||||| || ||| Sbjct 7547555 AAAGTCCGCCCATCTTCCAATTGTTTGCCAGCGAAGATCAAACGTTGCTGATCTGGAGGA 7547496 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || ||||||||||| || |||||| | |||||| |||| | |||||| ||| | || || Sbjct 7547495 ATGCCCTCTTTGTCCTG-AATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCTCAAC 7547437 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 ||| | ||| || ||||||||||| | |||||||| || || |||||||| Sbjct 7547436 TTCCAAAGTAATTGTTTTGCCAGTAAGAGTTTTAACGAAAATTTGCATTTT 7547386 >seq141 Length=594277 Score = 100 bits (110), Expect = 2e-16 Identities = 145/201 (72%), Gaps = 3/201 (1%) Strand=Plus/Plus Query 29590 GTGGATTCTTTTTGAATGTTATAATCCG-CAATGGTGCGAGAATCATCGAGTTGTTTGCC 29648 ||||||||||||||| ||| ||| || ||||| |||| ||| | || ||||| || Sbjct 352026 GTGGATTCTTTTTGACA-TTACAATTCGACAATG-TGCGGTGATCTCCTAGATGTTTTCC 352083 Query 29649 AGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGTTT 29708 | | |||||| |||||||| || ||||| ||||||||||| || || || ||| Sbjct 352084 TGTTGTTTTCAATCAATGCTGATCTGGTGGAATTCCCTCTTTGTCCTGCAACTTGACTTT 352143 Query 29709 GACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGT 29768 ||| |||| ||||| ||||| | || || |||||||| |||| ||| | || | || Sbjct 352144 TACATTTTCGACAGTATCAGAGGGCTCCACGTCAAGAGTGATAGCCTTGGCCGTAAGAGT 352203 Query 29769 TTTAACAAATATCTGCATTTT 29789 ||| ||| || |||| || Sbjct 352204 TTTTGTAAAAATGCGCATATT 352224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385211448787791