Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq152 91.5 2e-13 seq327 87.8 2e-12 >seq152 Length=597427 Score = 91.5 bits (100), Expect = 2e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 23053 ATCATGGGGATGAATATAATTTTGATGGTCCAGGTCAAATTTTAGCTCATGCtttttttC 23112 |||| || |||| ||||| || || ||||| || |||||| |||| ||||| || | || Sbjct 576424 ATCACGGCGATGGCTATAAATTCGACGGTCCTGGACAAATTCTAGCACATGCCTTCTATC 576483 Query 23113 CTGGTACTGGAAGAGGAGGAGATGCTCATTTTGATTTAGAAGAAAACTGGACATT 23167 ||||| ||| ||||||| ||||||||||| ||| || ||||| ||| |||| Sbjct 576484 CTGGTGTGGGACGAGGAGGTGATGCTCATTTCGATGACGACGAAAATTGGTCATT 576538 >seq327 Length=195883 Score = 87.8 bits (96), Expect = 2e-12 Identities = 123/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 114836 CTTATGGACGAATTGCTTCAAGATCTGGTTTAAGTTTTAAGAATGGAATTGAAGTAGGAG 114895 ||||||| || | || || | ||||||||| || |||||| ||||| || |||| Sbjct 70314 CTTATGGTCGCGTAGCACCACGTTCTGGTTTAGCTTGGAAGAATTTCATTGATGTGGGAG 70373 Query 114896 CAGGTGTTATCGATGAAGATTATCAAGATAATTTAATGGTTATTTTACATAACCATTCAG 114955 | || || || ||||||||||||| | |||||| ||| || | || ||||||| Sbjct 70374 CCGGGGTAATTGATGAAGATTATCGTGGCAATTTAGGTGTTGTTCTTTTCAATCATTCAG 70433 Query 114956 ATGTTGATTTTAAAATTGAAGTTAAAGATAGAATTGCTCAATTAATTGTTGAA 115008 || ||||||| |||| || | ||| | ||||||||| ||||| |||| Sbjct 70434 ATAATGATTTTGAAATAAAACGTGGTGATCGCATTGCTCAACTAATTTGTGAA 70486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635164491522280