Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq53 168 7e-37 seq1 134 1e-26 seq308 114 1e-20 seq240 91.5 1e-13 seq89 91.5 1e-13 >seq53 Length=1361919 Score = 168 bits (186), Expect = 7e-37 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 ||| || || | ||| | ||| || || | ||| |||||||||||||| |||||||| Sbjct 1232571 GCCACCACGCAGACGTAGAACCAAGTGCAATGTTGATTCTTTTTGTATATTGTAATCAGA 1232512 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 || ||||| | ||||| |||||||| |||||| |||||| ||| |||||||||||||| Sbjct 1232511 CAATGTGCGCCCATCTTCCAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGATCGGGAGG 1232452 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 || ||||||||||| || ||| ||||| | ||| | || || | ||||| || Sbjct 1232451 AATACCTTCTTTGTCTTGGATCTTTGCTTTTACATTTTCAATTGTATCAGATGGTTCCAC 1232392 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 ||| | ||| | || ||||| |||||||| |||||||| |||||||| Sbjct 1232391 TTCTAAAGTGATTGTTTTGCCAGTCAATGTCTTTACGAAGATTTGCAT 1232344 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||| || | ||| || |||||||| | ||| ||||||||||| || || |||||| | Sbjct 1241789 CCTCCGCGAAGACGTAAGACTAAATGGAGTGTTGATTCTTTTTGGATATTTTAATCGGAC 1241730 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | |||| | |||||| | |||||| |||||| |||||| ||| || |||||||||| Sbjct 1241729 AGAGTGCGCCCGTCTTCCAATTGTTTGCCAGCAAAGATCAAACGCTGTTGATCGGGAGAA 1241670 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||| || || |||||| ||| | | ||| | || || | || ||||| Sbjct 1241669 ATACCTTCCTTATCTTGGATTTTTGCTTTAACCGTTTCGATAGTATCCGACGGCTCTACC 1241610 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | ||| | || ||||| ||||| ||||| || || |||||||| Sbjct 1241609 TCCAAAGTAATAGTTTTGCCAGTCAAAGTTTTAACAAAGATTTGCAT 1241563 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | |||||| || ||||| | ||||||||| ||||||| |||||||| Sbjct 1240215 CCACCACGGAGACGCAACACCAAATGCAATGTAGATTCCTTTTGTACATTGTAATCCGAA 1240156 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | |||| |||||| | |||||| |||||| | |||| ||| |||||||| ||||| Sbjct 1240155 AGAGTGCGGCCGTCTTCTAATTGTTTGCCAGCAAAAATCAAACGCTGCTGATCTGGAGGA 1240096 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || |||||||| || ||||||| ||| | | ||| | || || | ||||||||| Sbjct 1240095 ATACCTTCTTTATCTTGAATTTTTGCTTTAACGTTTTCGATAGTATCCGATGGTTCTACT 1240036 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | ||| | || || || ||||| ||||| || || || ||||| Sbjct 1240035 TCCAAAGTAATGGTTTTTCCAGTCAAAGTTTTAACAAAGATCTGCAT 1239989 Score = 129 bits (142), Expect = 6e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 ||| || || |||||||| |||||||| | || |||||||| |||||||||||||| Sbjct 1239988 GCCACCGCGCAAACGCAACACTAAATGCAAGGTTGATTCTTTCTGTATGTTGTAATCCGA 1239929 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 | |||| ||||| | |||||||||||| |||||| ||| ||||| || || || Sbjct 1239928 GAGAGTGCGACCATCTTCCAATTGTTTACCAGCGAAGATCAAACGCTGCTGGTCTGGGGG 1239869 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 || ||||| || || || || ||| | | ||| || ||||| | || ||||| Sbjct 1239868 AATACCTTCCTTATCTTGGATCTTAGCTTTAACGTTTTCAACAGTGTCGGAAGGCTCTAC 1239809 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 || | ||| | || ||||| ||||| ||||| || || ||||||||| Sbjct 1239808 CTCCAAAGTAATGGTTTTGCCAGTCAAAGTTTTAACAAAAATTTGCATA 1239760 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | |||||| || ||||| | || |||||||| ||||| ||||| || Sbjct 1240443 CCACCGCGGAGACGCAACACCAAATGCAAAGTTGATTCTTTCTGTATATTGTAGTCCGAG 1240384 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || | |||||| || ||||| |||||| |||||| ||| ||||| || ||||| Sbjct 1240383 AGAGTACGACCGTCTTCCAGCTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 1240324 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || |||||||| || ||||||| || | | ||| | || || | |||||||| Sbjct 1240323 ATACCTTCTTTATCTTGAATTTTTGCCTTAACGTTTTCGATAGTATCCGATGGTTCTACC 1240264 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | ||| | || ||||| ||||| ||||| || ||||||||||| Sbjct 1240263 TCCAAAGTAATGGTTTTGCCAGTCAAAGTTTTAACAAATATTTGCAT 1240217 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || |||||||| || ||||| | |||||||| |||||||| |||||||| | Sbjct 1239759 CCACCACGCAAACGCAAGACCAAATGCAACGTAGATTCCTTTTGTATATTGTAATCAGAC 1239700 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | ||||| | |||||| || ||||||||||| | || | |||||| ||||| || || Sbjct 1239699 AATGTGCGCCCGTCTTCTAGCTGTTTACCAGCGAATATTAAACGTTGTTGATCTGGTGGG 1239640 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||| || || ||| || ||| | | || | || || | || || || Sbjct 1239639 ATTCCTTCCTTATCTTGAATCTTAGCTTTAACATTCTCAATAGTATCGGAAGGCTCAACC 1239580 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | || || || || || |||||||| || ||||| || ||||| Sbjct 1239579 TCCAAGGTGACAGTTTTCCCAGTCAATGTCTTCACGAAGATCTGCAT 1239533 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || ||||| || || ||||| | |||||||| |||||||| |||||||| | Sbjct 1232798 CCGCCACGCAAACGTAAGACCAAATGCAACGTAGATTCCTTTTGTATATTGTAATCAGAC 1232739 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | ||||| | |||||| | ||||||||||| |||| | ||| || ||||| || || Sbjct 1232738 AATGTGCGCCCGTCTTCTAACTGTTTACCAGCGAAGATTAAACGCTGTTGATCTGGTGGG 1232679 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||| || || ||| || || | | || | || || | || || || Sbjct 1232678 ATTCCTTCCTTATCTTGAATCTTAGCCTTAACATTCTCAATAGTATCGGAAGGCTCAACC 1232619 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | || | || ||||| |||||||| || || || |||||||| Sbjct 1232618 TCCAAGGTGATAGTTTTGCCAGTCAATGTCTTGACAAAAATTTGCAT 1232572 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 137197 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG 137256 || || || ||||| | ||||| || ||||| ||||| |||||| | || | Sbjct 1234450 CGTAAGACCAAATGGAGAGTAGACTCCTTTTGAATGTTATAATCGGAGAGAGTACGGCCA 1234391 Query 137257 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 137316 ||||| | |||||||||||| |||||| ||| ||||| || || || || ||||| || Sbjct 1234390 TCTTCCAATTGTTTACCAGCGAAGATCAAACGCTGCTGGTCTGGGGGAATACCTTCCTTA 1234331 Query 137317 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACC 137376 || || || ||| | | ||| | || || | || || ||||| | ||| | Sbjct 1234330 TCCTGGATCTTAGCTTTGACGTTTTCAATGGTATCGGAAGGCTCGACTTCCAAAGTGATG 1234271 Query 137377 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 || || |||||||| ||||| ||||| ||||||||| Sbjct 1234270 GTTTTACCGGTCAAAGTTTTGACGAAGATTTGCATA 1234235 >seq1 Length=10097680 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || ||||| ||||| | || ||||| | ||| |||||||| ||||| |||||||| | Sbjct 7547615 CCACCTCGCAAACGAAGTACCAAATGCAATGTCGATTCTTTCTGTATATTGTAATCAGAC 7547556 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || | | ||||| | |||||| ||||| |||||| |||||||||||| ||||| Sbjct 7547555 AAAGTCCGCCCATCTTCCAATTGTTTGCCAGCGAAGATCAAACGTTGCTGATCTGGAGGA 7547496 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 ||||| |||||||| |||||| || | | ||| | ||||| | || || ||| Sbjct 7547495 ATGCCCTCTTTGTCCTGAATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCTCAACT 7547436 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | ||| | || ||||| || | ||||| ||||| |||||||| Sbjct 7547435 TCCAAAGTAATTGTTTTGCCAGTAAGAGTTTTAACGAAAATTTGCAT 7547389 >seq308 Length=190705 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || ||||| |||||||| || | ||| | || ||||||||||| || || ||||| Sbjct 86622 CCACCTCGCAAACGCAACACAAGATGTAACGTGGATTCTTTTTGAATATTATAATCCGAT 86681 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | ||||| ||||| | |||||| ||||| |||||| ||||| || ||||| || Sbjct 86682 AATGTGCGACCATCTTCCAATTGTTTTCCAGCGAAGATCAATCGTTGTTGGTCGGGTGGA 86741 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || || |||||||| ||| || ||| | | ||| | || || | ||| || || Sbjct 86742 ATTCCCTCTTTGTCCTGAATCTTGGCTTTCACATTTTCAATAGTATCAGAGGGCTCGACC 86801 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 |||| ||| | |||||||| || | |||||||| || || |||||| Sbjct 86802 TCAAGAGTAATGGTCTTGCCCGTAAGGGTTTTTACAAAAATCTGCATA 86849 >seq240 Length=301270 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 151007 CTGGCCTCGAGCGCAGCATGATACACAGTTTCAGCAATTTGTTTATTCAATAGAACGGCA 151066 || ||||| | |||| | | ||| | |||||| |||||||| ||| |||||||| ||| Sbjct 293987 CTAGCCTCTAACGCACCGTAATATATAGTTTCGAAAATTTGTTGATTTAATAGAACAGCA 293928 Query 151067 GCATCGCTCACGTACGGTATGCGCAACATAACAAATGCATCGGCCAAACCTTGAATGCCT 151126 |||||| |||| || |||| | || || || || || || ||||| | ||| Sbjct 293927 TTTTCGCTCTCGTATGGATAACGCATTAAAATTAACGCGTCAGCAAATCCTTGGACACCT 293868 Query 151127 ATGCCGATGGGACGATGGCGCATATTAGATTTTTT 151161 || | || ||||| || ||||||||||||||||| Sbjct 293867 ATAGCAATCGGACGGTGACGCATATTAGATTTTTT 293833 >seq89 Length=807233 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 151007 CTGGCCTCGAGCGCAGCATGATACACAGTTTCAGCAATTTGTTTATTCAATAGAACGGCA 151066 || ||||| | |||| | | ||| | |||||| |||||||| ||| |||||||| ||| Sbjct 806823 CTAGCCTCTAACGCACCGTAATATATAGTTTCGAAAATTTGTTGATTTAATAGAACAGCA 806882 Query 151067 GCATCGCTCACGTACGGTATGCGCAACATAACAAATGCATCGGCCAAACCTTGAATGCCT 151126 |||||| |||| || |||| | || || || || || || ||||| | ||| Sbjct 806883 TTTTCGCTCTCGTATGGATAACGCATTAAAATTAACGCGTCAGCAAATCCTTGGACACCT 806942 Query 151127 ATGCCGATGGGACGATGGCGCATATTAGATTTTTT 151161 || | || ||||| || ||||||||||||||||| Sbjct 806943 ATAGCAATCGGACGGTGACGCATATTAGATTTTTT 806977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488533917673200