Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_024330.1 Length=37380 Score E Sequences producing significant alignments: (Bits) Value seq550 143 6e-30 >seq550 Length=29371 Score = 143 bits (158), Expect = 6e-30 Identities = 181/245 (74%), Gaps = 4/245 (2%) Strand=Plus/Minus Query 15946 CCGGCTGGAAACGATCTATCAGACCAACATGCAATCGGCCTACATGGCCGGGCGCTATGC 16005 ||||||||| ||||| | || ||||| | || || ||||| ||||||||||||||| | Sbjct 14245 CCGGCTGGAGACGATTTTTCGCACCAATACCCAGTCTGCCTATATGGCCGGGCGCTAT-C 14187 Query 16006 CGCCGCATACGAGGCCAGGGAAACCCAC--CCCTACTGGATGTATGTGGCCGTCATGGAC 16063 || || | || | | | ||| | ||||||||| ||||||||| || |||||| Sbjct 14186 AGCGGC-TGCGCGAGAACGTCGACCAGCGGCCCTACTGGCAGTATGTGGCGGTGATGGAC 14128 Query 16064 AGCGTCACCCGGCCCAGCCATGCGGCGCTACATGGCAAGGTGTTCCGCTGGGACGACCCG 16123 ||| |||||| ||||||||||| ||||| |||||| ||||||||| | ||||| || Sbjct 14127 AGCCACACCCGCCCCAGCCATGCCGCGCTGCATGGCCGGGTGTTCCGTTATGACGATGCG 14068 Query 16124 ATCTGGCAACACATCATGCCGCCGAATGGCTACAACTGCCGGTGCCGAATAGTTCCGTTG 16183 |||| | | | | || ||||| |||||||||||||| ||||| || || || Sbjct 14067 GGCTGGGATACCCTGTTTCCCCCGAACGGCTACAACTGCCGCTGCCGGGTACGGGCGCTG 14008 Query 16184 ACGGC 16188 ||||| Sbjct 14007 ACGGC 14003 Score = 82.4 bits (90), Expect = 2e-11 Identities = 80/103 (78%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 14162 CATCTTGATCGAGGCCGAGCAGGGTCAACTCCAGGCTCAGGCCGAGTTGTTCATGGACAT 14221 |||| ||| ||||||||||||||| || || | ||||| || |||| | || || Sbjct 15912 CATCCTGAGCGAGGCCGAGCAGGGGCACCTGGTGCGCCAGGCTGACCTGTTTTTTGATAT 15853 Query 14222 GGAGGAACGCGACGCCCACCTGTTCGCCGAAATGAGCAAGCGC 14264 |||||| ||||||| ||| || || ||||| |||||||||||| Sbjct 15852 GGAGGAGCGCGACGGCCATCTTTTTGCCGAGATGAGCAAGCGC 15810 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 119492057237604