Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq146 116 7e-21 seq53 84.2 4e-11 >seq146 Length=585010 Score = 116 bits (128), Expect = 7e-21 Identities = 164/226 (73%), Gaps = 6/226 (3%) Strand=Plus/Minus Query 182979 CTATTCTATTAAAC-AACTCGAAAAGGCAGAAACACATGACCCTCTATGGAATGCATCAC 183037 |||| || ||| || || |||| ||||| | || | || | | |||||| || | | Sbjct 532113 CTATACT-TTAGACGAATTCGAGAAGGCCGTTACTTACGATGATTTGTGGAATTCAGCTC 532055 Query 183038 AAATACAGATGATGAGAGAAGGAAAAATGCATAGTTTTTTACGAATGTACTGGGCTAAAA 183097 | |||| |||| ||||| || |||||||| ||||||| || ||||| ||||| |||| Sbjct 532054 AGTTACAATTGATAAGAGAGGGTAAAATGCACGGTTTTTTGCGCATGTATTGGGCGAAAA 531995 Query 183098 AGATACTTGAATGGACAAGAACTCCGGAAGATGCTTTG--AGTTATAGTATCTATATGAA 183155 |||| || |||||| | | |||||| ||||| ||||| | || | ||| | || || Sbjct 531994 AGATTCTGGAATGGTCTAAAACTCCTGAAGACGCTTTAGAAATTTCACTATTTTTA--AA 531937 Query 183156 CAATAAGTACGAACTAGACGGTACGGATCCTAACGGATACGTAGGT 183201 |||||||| | || || |||||||||||||| ||||| ||| Sbjct 531936 TGATAAGTACAGTTTGGATGGAACGGATCCTAACGGTTACGTGGGT 531891 >seq53 Length=1361919 Score = 84.2 bits (92), Expect = 4e-11 Identities = 99/136 (73%), Gaps = 11/136 (8%) Strand=Plus/Minus Query 81647 GTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAACA-------- 81698 ||| ||||||| |||||||| |||||||| | || | | |||||||||| Sbjct 1232768 GTAGATTCCTTTTGTATATTGTAATCAGACAATGTGCGCCCGTCTTCTAACTGTTTACCA 1232709 Query 81699 ---AAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCTTTT 81755 ||||||| | |||||| |||| | ||| ||||||||||||||||||| || || Sbjct 1232708 GCGAAGATTAAACGCTGTTGATCTGGTGGGATTCCTTCCTTATCTTGAATCTTAGCCTTA 1232649 Query 81756 ATATTTTCAATCGTAT 81771 | ||| ||||| |||| Sbjct 1232648 ACATTCTCAATAGTAT 1232633 Score = 84.2 bits (92), Expect = 4e-11 Identities = 99/136 (73%), Gaps = 11/136 (8%) Strand=Plus/Minus Query 81647 GTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAACA-------- 81698 ||| ||||||| |||||||| |||||||| | || | | |||||||| | Sbjct 1239729 GTAGATTCCTTTTGTATATTGTAATCAGACAATGTGCGCCCGTCTTCTAGCTGTTTACCA 1239670 Query 81699 ---AAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCTTTT 81755 || |||| | ||||||| |||| | ||| ||||||||||||||||||| ||||| Sbjct 1239669 GCGAATATTAAACGTTGTTGATCTGGTGGGATTCCTTCCTTATCTTGAATCTTAGCTTTA 1239610 Query 81756 ATATTTTCAATCGTAT 81771 | ||| ||||| |||| Sbjct 1239609 ACATTCTCAATAGTAT 1239594 Score = 84.2 bits (92), Expect = 4e-11 Identities = 105/146 (72%), Gaps = 11/146 (8%) Strand=Plus/Minus Query 81637 CAAACACAGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA 81696 |||| || ||| |||| ||||||||||| ||||| || ||||| | || ||||||||| Sbjct 1241541 CAAATGCAAAGTTGATTCTTTCTGTATATTGTAATCCGAAAGAGTGCGACCGTCTTCTAA 1241482 Query 81697 -----------CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAAT 81745 ||||||| | | || ||| ||||| | || |||| ||||||||||| Sbjct 1241481 TTGTTTGCCAGCAAAGATCAAACGCTGCTGATCTGGAGGAATACCTTCTTTATCTTGAAT 1241422 Query 81746 CTTTGCTTTTATATTTTCAATCGTAT 81771 |||||||| | ||||| || |||| Sbjct 1241421 TTTTGCTTTAACGTTTTCGATAGTAT 1241396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903392555851360