Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq148 122 8e-23 seq240 113 4e-20 seq89 113 4e-20 seq53 109 5e-19 seq1 100 3e-16 >seq148 Length=545759 Score = 122 bits (134), Expect = 8e-23 Identities = 472/733 (64%), Gaps = 23/733 (3%) Strand=Plus/Minus Query 148257 TGATTCACCACC-TGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTTGCTCGTAAA 148315 ||||| ||||| ||||| || || | | || || || ||| ||||| ||| | Sbjct 221321 TGATTGACCACAATGAAA-TCACCAGATAATACACGTCGTGTATAAACGTTTGAAGTATA 221263 Query 148316 CGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCATGTACGC 148375 ||| ||||| || ||||||||||| | ||| || || || | |||||| ||||| || Sbjct 221262 CGGCTCAAAGGATTCGTTGTTGCCAAGAATTTGAGCAGTAGATGCCGTAGGCATTGGGGC 221203 Query 148376 TACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAGCCGCCCAGTC 148435 |||| || || || |||| ||| ||||||| || | || ||||||||||| || Sbjct 221202 CACCAACAAAGAATTACGCACACCATGATTTTTGATGTCATCTTTAAGAGCCGCCCAATC 221143 Query 148436 CCAGAGCGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCGCGGCTAGCGGG 148495 ||| || | || || |||||||||||| || || ||||| || |||| | || Sbjct 221142 CCAAAGATCAGTAGGCTTCTTGTTCCACATGTCATATTGAAGAATACCTTTGCTAACTGG 221083 Query 148496 GCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAGCTCGCCTCGAG 148555 ||| || || || | |||||| || | |||| || ||||| ||||| | Sbjct 221082 GCTACCTTCATATGTTTCGTACGGGCCATATTGTTTGGCCAACTCACAGCTAGCCTCTAA 221023 Query 148556 CGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCAGCGCCGCCGACTCGCTTTC 148615 || ||||| || || || ||| |||||| || | || | || |||||||| Sbjct 221022 AGCACCGTAATATATGGTTTCGAAAATTTGTTGATTTAATAGAACAGCATTTTCGCTTTC 220963 Query 148616 GTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACGCCCACGCCAATGGG 148675 || || ||||| | || ||||| |||| || || ||||| | ||||| || Sbjct 220962 ATATGGATAACGCATTAAAATTAATGCGTCAGCAAATCCTTGGACGCCTATACCAATTGG 220903 Query 148676 CCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCG--AGCGGATAGTGGTTGCGGTCGATG 148733 ||||| | || ||| ||| || | |||||| | ||| ||| || Sbjct 220902 ACGGTGACGCAAATT--AGATCTTTTGGCTTCCGGCAACGGATAATAGTTAATGTCAATT 220845 Query 148734 ATCTTGTCAAGATTGCGCACCACCACCTTTGTAA-TTCTGCGCAGCAAT---TCAAAATC 148789 || |||| || || | | | ||| |||| |||| |||| | |||||| Sbjct 220844 ATTTTGTTGAGGTTCCTTGTTATAAGCTTCGTAACTTCT----TTCAATTTGTTAAAATC 220789 Query 148790 GTACTTGTCATC------TACGATGCATCGGTTCACGGCGATAGAGGCTAGATTGCACAC 148843 ||| || | ||| |||| ||| ||| | || || ||||| || ||||| || Sbjct 220788 GTATTTTTTATCCGTAGTCACGA-ACAT--GTTTAATGCAATCGAGGCCAGGTTGCAAAC 220732 Query 148844 GGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGAT 148903 || | ||||| | | |||| || || || || | |||| || || |||| || Sbjct 220731 TGCAATTTCATCAGCCGAAGTGTATTCGACAATTTCTGTACACAAGTTACTAGATTTTAT 220672 Query 148904 CACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGG 148963 || | ||||| |||||| ||||||| ||||| || || ||||| ||||| || || Sbjct 220671 AGTACCAATGTTCTGTTGATTACTCTTGCGATTGCAAGCATCTTTGTAAAGCATATAAGG 220612 Query 148964 TCCGCCAGTTTCC 148976 ||||| ||| Sbjct 220611 AGTTCCAGTCTCC 220599 >seq240 Length=301270 Score = 113 bits (124), Expect = 4e-20 Identities = 244/365 (67%), Gaps = 0/365 (0%) Strand=Plus/Minus Query 148317 GGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCATGTACGCT 148376 || ||||| |||| |||||| |||| ||| || || | | ||| | ||||| || Sbjct 294215 GGCTCAAAAGACTGGTTGTTTCCCAGAATTTGAGCAGCAGATGCTGCAGGCATTGCAGCC 294156 Query 148377 ACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAGCCGCCCAGTCC 148436 |||| || ||||| |||| ||| || ||||||| | || ||||||||||||||| Sbjct 294155 ACCAACAAAGAGTTACGCACACCATGAATTTTTATGTGTTCTTTAAGAGCCGCCCAGTCC 294096 Query 148437 CAGAGCGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCGCGGCTAGCGGGG 148496 || || | || ||| |||||||||||| || || |||||||| |||| | ||| Sbjct 294095 CAAAGATCAGTAGGCGTCTTGTTCCACATGTCATATTGAAGAATGCCTTTGCTAACTGGG 294036 Query 148497 CTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAGCTCGCCTCGAGC 148556 || || || || | |||||| || | |||| || ||||| ||||| | | Sbjct 294035 CTACCTTCATATGTTTCGTACGGGCCATATTGTTTGGCCAACTCACAGCTAGCCTCTAAC 293976 Query 148557 GCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCAGCGCCGCCGACTCGCTTTCG 148616 || ||||| || || || ||| |||||| || | || | || ||||| ||| Sbjct 293975 GCACCGTAATATATAGTTTCGAAAATTTGTTGATTTAATAGAACAGCATTTTCGCTCTCG 293916 Query 148617 TACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACGCCCACGCCAATGGGC 148676 || || ||||| | |||||||| |||| || || || || | |||| || Sbjct 293915 TATGGATAACGCATTAAAATTAACGCGTCAGCAAATCCTTGGACACCTATAGCAATCGGA 293856 Query 148677 CGGTG 148681 ||||| Sbjct 293855 CGGTG 293851 >seq89 Length=807233 Score = 113 bits (124), Expect = 4e-20 Identities = 244/365 (67%), Gaps = 0/365 (0%) Strand=Plus/Plus Query 148317 GGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCATGTACGCT 148376 || ||||| |||| |||||| |||| ||| || || | | ||| | ||||| || Sbjct 806595 GGCTCAAAAGACTGGTTGTTTCCCAGAATTTGAGCAGCAGATGCTGCAGGCATTGCAGCC 806654 Query 148377 ACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAGCCGCCCAGTCC 148436 |||| || ||||| |||| ||| || ||||||| | || ||||||||||||||| Sbjct 806655 ACCAACAAAGAGTTACGCACACCATGAATTTTTATGTGTTCTTTAAGAGCCGCCCAGTCC 806714 Query 148437 CAGAGCGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCGCGGCTAGCGGGG 148496 || || | || ||| |||||||||||| || || |||||||| |||| | ||| Sbjct 806715 CAAAGATCAGTAGGCGTCTTGTTCCACATGTCATATTGAAGAATGCCTTTGCTAACTGGG 806774 Query 148497 CTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAGCTCGCCTCGAGC 148556 || || || || | |||||| || | |||| || ||||| ||||| | | Sbjct 806775 CTACCTTCATATGTTTCGTACGGGCCATATTGTTTGGCCAACTCACAGCTAGCCTCTAAC 806834 Query 148557 GCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCAGCGCCGCCGACTCGCTTTCG 148616 || ||||| || || || ||| |||||| || | || | || ||||| ||| Sbjct 806835 GCACCGTAATATATAGTTTCGAAAATTTGTTGATTTAATAGAACAGCATTTTCGCTCTCG 806894 Query 148617 TACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACGCCCACGCCAATGGGC 148676 || || ||||| | |||||||| |||| || || || || | |||| || Sbjct 806895 TATGGATAACGCATTAAAATTAACGCGTCAGCAAATCCTTGGACACCTATAGCAATCGGA 806954 Query 148677 CGGTG 148681 ||||| Sbjct 806955 CGGTG 806959 >seq53 Length=1361919 Score = 109 bits (120), Expect = 5e-19 Identities = 152/208 (73%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | ||| || ||||||||||| |||||||| | ||| ||| | || || | Sbjct 1239966 AAATGCAAGGTTGATTCTTTCTGTATGTTGTAATCCGAGAGAGTGCGACCA-TCTTCCAA 1239908 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 || || || ||| | || | ||||||||||| || || || |||||||| || ||| Sbjct 1239907 TTGTTTACCAGCGAAGATCAAACGCTGCTGGTCTGGGGGAATACCTTCCTTATCTTGGAT 1239848 Query 133574 CTTTTGCTTGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 | || |||| | | | ||||| ||||||| ||||| || || | || | |||||||| Sbjct 1239847 C-TTAGCTTTAACGTTTTCAACAGTGTCGGAAGGCTCTACCTCCAAAGTAATGGTTTTGC 1239789 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | |||| |||||| || ||||| ||||| Sbjct 1239788 CAGTCAAAGTTTTAACAAAAATTTGCAT 1239761 Score = 96.9 bits (106), Expect = 3e-15 Identities = 147/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 ||||| | || || || || |||||||||||||| || ||| | ||| || ||| Sbjct 1239738 AAATGCAACGTAGATTCCTTTTGTATATTGTAATCAGACAATGTGCGCCCGTCTTCTAGC 1239679 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 || || || ||| | || | || || || || || ||||| |||||||| || ||| Sbjct 1239678 TGTTTACCAGCGAATATTAAACGTTGTTGATCTGGTGGGATTCCTTCCTTATC-TTGAAT 1239620 Query 133575 TTTTGCTTGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 || |||| | | | ||||| || |||| ||||| || || | |||||| ||||| || Sbjct 1239619 CTTAGCTTTAACATTCTCAATAGTATCGGAAGGCTCAACCTCCAAGGTGACAGTTTTCCC 1239560 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 |||| || || ||||| |||||||| Sbjct 1239559 AGTCAATGTCTTCACGAAGATCTGCAT 1239533 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || || ||||| |||||||||||||| || ||| | || || || || ||||| Sbjct 1232540 GTTGATTCTTTTTGTATATTGTAATCAGACAATGTGCGCCCATCTTCCAGTTGTTTGCCA 1232481 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | || | |||||||| |||||||| || ||||| ||||| ||||||| || Sbjct 1232480 GCAAAGATCAAACGCTGCTGATCGGGAGGAATACCTTCTTTGTCTTGGATCTTTGCTTTT 1232421 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | |||| || || | || ||||| || | |||| |||||||| |||| || Sbjct 1232420 ACATTTTCAATTGTATCAGATGGTTCCACTTCTAAAGTGATTGTTTTGCCAGTCAATGTC 1232361 Query 133644 TTTACGAAAATCTGCAT 133660 |||||||| || ||||| Sbjct 1232360 TTTACGAAGATTTGCAT 1232344 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 ||||| | || || || || |||||||||||||| || ||| | ||| || | | Sbjct 1232777 AAATGCAACGTAGATTCCTTTTGTATATTGTAATCAGACAATGTGCGCCCGTCTTCTAAC 1232718 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 || || || ||| | || | ||||| || || || ||||| |||||||| || ||| Sbjct 1232717 TGTTTACCAGCGAAGATTAAACGCTGTTGATCTGGTGGGATTCCTTCCTTATCTTGAATC 1232658 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||| | | ||||| || |||| ||||| || || | ||||| |||||||| Sbjct 1232657 TTAGCCTTAACATTCTCAATAGTATCGGAAGGCTCAACCTCCAAGGTGATAGTTTTGCCA 1232598 Query 133635 GTCAGAGTTTTTACGAAAATCTGCATG 133661 |||| || || || ||||| |||||| Sbjct 1232597 GTCAATGTCTTGACAAAAATTTGCATG 1232571 Score = 89.7 bits (98), Expect = 5e-13 Identities = 148/209 (71%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGA 133512 ||||| | || || ||||||||||||||||| || | | | | |||| ||| || | Sbjct 1240422 AAATGCAAAGTTGATTCTTTCTGTATATTGTAGTC--CGAGAGAGTACGACCGTCTTCCA 1240365 Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572 |||| ||||| || | || | ||||||||||| ||||| || ||||| || || ||| Sbjct 1240364 GCTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCTTTATC-TTGA 1240306 Query 133573 TCTTTTG-CTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTG 133631 ||||| ||| | | || | || || | || || || || | || | ||||||| Sbjct 1240305 ATTTTTGCCTTAACGTTTTCGATAGTATCCGATGGTTCTACCTCCAAAGTAATGGTTTTG 1240246 Query 133632 CCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || |||| |||||| || || || ||||| Sbjct 1240245 CCAGTCAAAGTTTTAACAAATATTTGCAT 1240217 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 || || || ||| | || | ||||||||||| || || || |||||||| || |||| Sbjct 1234381 TGTTTACCAGCGAAGATCAAACGCTGCTGGTCTGGGGGAATACCTTCCTTATCCTGGATC 1234322 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || |||| | |||| || |||| ||||| || || | |||| |||||| ||| Sbjct 1234321 TTAGCTTTGACGTTTTCAATGGTATCGGAAGGCTCGACTTCCAAAGTGATGGTTTTACCG 1234262 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 |||| |||||| ||||| || ||||| Sbjct 1234261 GTCAAAGTTTTGACGAAGATTTGCAT 1234236 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/208 (70%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | || || |||||||||||||||||||| | ||| ||| ||| || | Sbjct 1241540 AAATGCAAAGTTGATTCTTTCTGTATATTGTAATCCGAAAGAGTGCGAC-CGTCTTCTAA 1241482 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 || ||||| || | || | |||||||| || ||||| || ||||| || || ||| Sbjct 1241481 TTGTTTGCCAGCAAAGATCAAACGCTGCTGATCTGGAGGAATACCTTCTTTATC-TTGAA 1241423 Query 133574 CTTTTGCTTGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 |||||||| | | | || | || || | || || || || | || | || ||||| Sbjct 1241422 TTTTTGCTTTAACGTTTTCGATAGTATCTGATGGTTCTACCTCCAAAGTAATGGATTTGC 1241363 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | |||| ||||||||| || || ||||| Sbjct 1241362 CAGTCAAAGTTTTTACAAAGATTTGCAT 1241335 >seq1 Length=10097680 Score = 100 bits (110), Expect = 3e-16 Identities = 148/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 ||||| | || || |||||||||||||||||||| || || | || || | Sbjct 7547594 AAATGCAATGTCGATTCTTTCTGTATATTGTAATCAGACAAAGTCCGCCCATCTTCCAAT 7547535 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 || ||||| ||| | || | || ||||| || ||||| ||||| || ||||| ||| Sbjct 7547534 TGTTTGCCAGCGAAGATCAAACGTTGCTGATCTGGAGGAATGCCCTCTTTGTC-CTGAAT 7547476 Query 133575 TTTTG-CTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| | ||||| | |||| ||||||| ||||| || || | || | |||||||| Sbjct 7547475 TTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAATTGTTTTGCC 7547416 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 || |||||||| |||||||| ||||| Sbjct 7547415 AGTAAGAGTTTTAACGAAAATTTGCAT 7547389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483410823403240