Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq148 170 5e-37 seq184 141 2e-28 seq45 123 6e-23 seq240 114 3e-20 seq134 109 1e-18 seq3 91.5 3e-13 >seq148 Length=545759 Score = 170 bits (188), Expect = 5e-37 Identities = 566/866 (65%), Gaps = 31/866 (4%) Strand=Plus/Plus Query 110306 TTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATTGA 110365 ||||||||| |||||||| ||||| ||||||| | | |||| | || || Sbjct 219840 TTTTGGTTTTAAAACTCTGGAACGATCTTATTTGTTAAAGATTGATGGTAAAATTGCGGA 219899 Query 110366 ACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAAGC 110425 || || ||||| ||| | | ||||| || ||||||||||| || |||| ||| | || Sbjct 219900 GCGGCCGCAACATATGCTAATGCGTGTCGCCATTGGTATTCACGGTGATGACATTGAGGC 219959 Query 110426 TGTTATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCTATT-----CATGCTACTCCT 110480 || ||||||| ||| || | || || || |||||| |||||||| || Sbjct 219960 TGCTATTGAAACATATAATCT--TATGTCG---GAGCGCTATTTTACTCATGCTACGCCA 220014 Query 110481 ACCCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTT-CTAGGAAT 110539 || ||||| || | ||||| | ||||||| | ||||| |||||| ||| || Sbjct 220015 ACTTTATTTGGTGCTGCAACTATACGTCCACAATTGTCATCTTG-TTTCTTGCTAACGAT 220073 Query 110540 TAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAA 110599 || || || | ||||||||| | ||| | | || |||| ||||| || Sbjct 220074 CCCTGAAGACTCCTTGAAAGGTATTTTGAAGGCTGTAGACCAATGTGCTAAAATTTCCAA 220133 Query 110600 AAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGC 110659 | || || || ||| | | |||||| | || ||||||| | || || || Sbjct 220134 GTCAGCCGGGGGGATAGGTTTAAATGTTCATTGCGTGCGAGCAAAAGGGACGAAGATAGC 220193 Query 110660 AACAGCGAAGGGTGCTTCAAC---TGGACTTGTTCCAATGTTAAGAGTCTTCAACGACAC 110716 | || | |||| | | | ||| |||||||| ||||| | | || ||| Sbjct 220194 AG--GC-ACTGGTGATGTATCGGATGGTCTTGTTCCTATGTTGCGTCTGTTTAACAGTGT 220250 Query 110717 TGCAAAATATGTGAATCAAGGTGGTAAGAGAAAT---GGCTCATTTGCTATCTATCTCGA 110773 ||| ||||| |||| |||||| | | | || | |||||||| || | || Sbjct 220251 TGCCCGTTATGTAGATCAGGGTGGTGGAAAACGTCCAGGTGCTTTTGCTATGTACTTGGA 220310 Query 110774 ACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAA--ATCAAGGATTTGAA 110831 |||||||| ||||| | || ||||| |||| || | |||| || || || Sbjct 220311 GCCTTGGCACGCAGATGTTTTCGAATTTCTAGA--TTTGAAAAAGAATTTTGGTGAGGAG 220368 Query 110832 GAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGT 110891 || | ||||||| ||||| |||||||| | ||||| | ||| | ||||||||| | Sbjct 220369 AAAGATCGAGCACGCGATTTGTTTTATGCCCTATGGATACCGGATCTGTTCATGAAAAGA 220428 Query 110892 GTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGAT 110951 || | || ||||| |||||||| |||||||||||| | ||||||| | | ||| Sbjct 220429 GTAGAGGATGATGGCGATTGGTCTCTAATGTGTCCTCATAAATGTCCTGGTTTGTGTGAA 220488 Query 110952 GTATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGC-AAGTTTCG 111010 || | ||| | || ||||| | | ||| ||||| |||| || ||| ||| Sbjct 220489 GTTTGGGGAGATGAATTTGACAAATTATACATGAAATACGAAAGTGAGGGCAAAGCGAAT 220548 Query 111011 CAAACAAATTCCAGCTCAAGAACTTTGGTT--CAAAATCCTTGAATCACAAGTTGAAACT 111068 ||||| |||| ||||| | | ||||| ||| || | | || |||| || ||| Sbjct 220549 CAAAC-AATTAAAGCTCGTGCCTTGTGGTTTGCAATATGC--AAGTCTCAAGCGGAGACT 220605 Query 111069 GGAACTCCTTATATTTTGTATAAAGATCATATTAATCGCAAATCTAATCAAATGAATTTA 111128 |||||||||||||| | || |||||| | |||||||| ||||||| ||| | Sbjct 220606 GGAACTCCTTATATGCTTTACAAAGATGCTTGCAATCGCAAGAGTAATCAACAGAACATT 220665 Query 111129 GGAACAATTAAGTCTAGTAATTTGTG 111154 || || || || |||||||| ||||| Sbjct 220666 GGTACTATAAAATCTAGTAACTTGTG 220691 >seq184 Length=525875 Score = 141 bits (156), Expect = 2e-28 Identities = 268/389 (69%), Gaps = 8/389 (2%) Strand=Plus/Plus Query 131796 TTAAAAAGAAAGCAGAATGGGCTATTAAATGGAT-TCAAGATGATTCCGCTAATTTTTCT 131854 ||||||||||||| ||||||||| | ||||| ||| | ||| || |||||| | Sbjct 28587 TTAAAAAGAAAGCGGAATGGGCTTTAGCTTGGATATCATCGCG-TTCGGCGAATTTTGGT 28645 Query 131855 ACAAGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCT 131914 | | ||||||||||| || ||||||||||||||| || ||| | | Sbjct 28646 GAGCGTGTCATAGCTTTTGCTGCCGTCGAAGGTATATTCTTTAGTGGAAGTTTTGCTTCG 28705 Query 131915 ATCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATC 131974 || |||||||||||||| |||||| | ||||| || || |||| || ||| |||| || Sbjct 28706 ATATTTTGGCTTAAGAAACGTGGAATAATGCCGGGTCTAACATTTTCTAATGAATTAATA 28765 Query 131975 TCGAGAGATGAAGCATTGCATACTGAATTTGCTATATTAATCTATAGAAAATTTGCTGAT 132034 || | ||||||| || ||| |||||||| | ||||| | || || ||||| | Sbjct 28766 TCACGCGATGAAGGTTTACATTGCGAATTTGCGGTTTTAATGTTTA-AATATTTGATACA 28824 Query 132035 AAACTTGATGAAAATA---ATATTAAACAACTTATAAGCGAAGCAGTTGATATCGAGAAG 132091 ||| || ||| | ||||| || | |||| ||| || ||| | || || ||| Sbjct 28825 AAAACCGACCAAAGAACGCATATT--GGAAATAATAACCGATGCCGTTAAAATTGAAAAG 28882 Query 132092 GAGTTTATTACAGAAGCTTTGCCTTGCAATTTGATTGGGATGAATGCTGACTCTATGAAG 132151 || ||| | ||||||||| | || |||||| || || |||||| ||| |||| Sbjct 28883 GAATTTCTGACAGAAGCTCTACCAGTCAATTTAATCGGTATGAATAATGAAAGTATGTGT 28942 Query 132152 GAGTACATTGAATTCGTTGCTGATCGTTT 132180 | ||||| |||| || || |||||||| Sbjct 28943 CAATACATAGAATATGTAGCGGATCGTTT 28971 >seq45 Length=1499061 Score = 123 bits (136), Expect = 6e-23 Identities = 121/156 (78%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 305330 GTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAA 305389 ||| | |||||| | || || ||||| |||||||||||||| ||| |||| | | ||| Sbjct 896136 GTTTTATTCAATCGTCAGCCGTCACTTCATAAAATGTCTATTATGTGTCATGAGGCCAAG 896195 Query 305390 GTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGAT 305449 ||| || || ||||| || |||| | | |||||||||||||||||||| ||| Sbjct 896196 GTACAGCCTCAGCGTACTTTTCGTTTTAATGAATGCGCTTGTACGCCTTATAATGCCGAT 896255 Query 305450 TTTGATGGAGATGAAATGAATATGCATGTACCTCAA 305485 |||||||| |||||||||||| ||||| |||| ||| Sbjct 896256 TTTGATGGGGATGAAATGAATTTGCATTTACCGCAA 896291 >seq240 Length=301270 Score = 114 bits (126), Expect = 3e-20 Identities = 340/518 (66%), Gaps = 11/518 (2%) Strand=Plus/Plus Query 110641 CAAAAGGAGCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAA 110700 ||||||| |||| || || | || || || || | ||| ||||| || ||||| | Sbjct 293129 CAAAAGGTACAAAGATATCAGGTACTAATGGCGCATCGAGTGGTCTTGTCCCTATGTTGA 293188 Query 110701 GAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGTAAGAGAA----ATGGCTCA 110756 | || |||||| | || ||||| |||||| || | || || | || | Sbjct 293189 GCGTGTTCAACAATCTCGCCTGTTATGTACATCAAGACGGGA-GAAAACGTCAAGGTGCT 293247 Query 110757 TTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAA 110816 ||||||| || | || ||||||||| ||||||| || ||||| || | || | ||| Sbjct 293248 CTTGCTATATACTTGGAGCCTTGGCATGCAGATATTTTCGAATTTCTAAA--TTTGAAAA 293305 Query 110817 A--ATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAG 110874 || || || ||| | | ||||||||||| |||||| | ||||| | | Sbjct 293306 GGGATACTGGTAAGGAGGAAAACCGTCCACGTGATTTACATTATGCCCTATGGATACCGG 293365 Query 110875 ATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTT 110934 || | ||||||||| | || | | ||||| |||||||| |||||||||||| | Sbjct 293366 ATCTTTTCATGAAAAGAGTAGAGGCTGATGGCGATTGGTCTCTAATGTGTCCTCATAAAT 293425 Query 110935 CTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAA 110994 |||||| | | ||| || | ||| | || ||||| | | ||| ||||| |||| Sbjct 293426 GCCCTGGTTTGTGTGAAGTTTGGGGACATGAATTTGACAAATTATACATGAAATACGAAA 293485 Query 110995 AAGAAGGCAAGTTTCGCAAACAAATTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAAT 111054 || ||||| ||| |||| ||||| | | |||||| ||| | | | Sbjct 293486 GTGAGGGCAAAGCGAATAAAACAATTAAAGCTCGTGCCTTGTGGTTCGCAAT-ATACAGT 293544 Query 111055 -CACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGATCATATTAATCGCAAATCT 111113 | |||| || |||||| |||||||||| | || |||||| | ||||||||| Sbjct 293545 GCTCAAGAAGAGACTGGAGCTCCTTATATGCTTTACAAAGATGCTTGCAATCGCAAAAGC 293604 Query 111114 AATCAAATGAATTTAGGAACAATTAAGTCTAGTAATTT 111151 |||||| ||| | || ||||| || | |||||| || Sbjct 293605 AATCAAGGGAACATTGGTACAATAAAATGTAGTAACTT 293642 Score = 113 bits (124), Expect = 1e-19 Identities = 324/492 (66%), Gaps = 11/492 (2%) Strand=Plus/Minus Query 110667 AAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATAT 110726 || || || || | ||| |||||||| || || || || |||||| | || ||| Sbjct 291375 AATGGCGCATCGAATGGTCTTGTTCCTATATTGAGCGTGTTCAACAATCTCGCCTGTTAT 291316 Query 110727 GTGAATCAAGGTGGTAAGAGAA----ATGGCTCATTTGCTATCTATCTCGAACCTTGGCA 110782 || |||||| || | || || | || | ||||||| || | || |||||||| Sbjct 291315 GTACATCAAGACGGGA-GAAAACGTCAAGGTGCTCTTGCTATATACTTGGAGCCTTGGCA 291257 Query 110783 TTCAGATATATTTGAATTCTTAGAACTTCGTAAAA--ATCAAGGATTTGAAGAACAAAGA 110840 | ||||||| || ||||| || | || | ||| || || || ||| | | Sbjct 291256 TGCAGATATTTTCGAATTTCTAAA--TTTGAAAAGGGATACTGGTAAGGAGGAAAACCGT 291199 Query 110841 GCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAA 110900 |||||||||||| |||||| | ||||| | ||| | ||||||||| | || | | Sbjct 291198 GCACGTGATTTACATTATGCCCTATGGATACCGGATCTTTTCATGAAAAGAGTAGAGGCT 291139 Query 110901 AATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGGA 110960 ||||| |||||||| |||||||||||| | |||||| | | ||| || | ||| Sbjct 291138 GATGGCGATTGGTCTCTAATGTGTCCTCATAAATGCCCTGGTTTGTGTGAAGTTTGGGGA 291079 Query 110961 AAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAAACAAATT 111020 | || ||||| | | ||| ||||| |||| || ||||| ||| |||| Sbjct 291078 GATGAATTTGACAAATTATACATGAAATACGAAAGTGAGGGCAAAGCGAATAAAACAATT 291019 Query 111021 CCAGCTCAAGAACTTTGGTTCAAAATCCTTGAAT-CACAAGTTGAAACTGGAACTCCTTA 111079 ||||| | | |||||| ||| | | | | |||| | |||||| ||||||| Sbjct 291018 AAAGCTCGTGCCTTGTGGTTCGCAAT-ATACAGTGCTCAAGAAAAGACTGGAGCTCCTTA 290960 Query 111080 TATTTTGTATAAAGATCATATTAATCGCAAATCTAATCAAATGAATTTAGGAACAATTAA 111139 ||| | || |||||| | ||||||||| |||||| ||| | || ||||| || Sbjct 290959 TATGCTTTACAAAGATGCTTGCAATCGCAAAAGCAATCAAGGGAACATTGGTACAATAAA 290900 Query 111140 GTCTAGTAATTT 111151 | |||||| || Sbjct 290899 ATGTAGTAACTT 290888 >seq134 Length=634362 Score = 109 bits (120), Expect = 1e-18 Identities = 136/185 (74%), Gaps = 6/185 (3%) Strand=Plus/Minus Query 305306 AGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATG 305365 |||||||| |||| |||||| |||| | |||||| | || || | ||||| |||||| Sbjct 353571 AGACATTTACGTGACGATGATTTGGTTATATTCAATCGTCAGCCCACTCTGCACAAAATG 353512 Query 305366 TCTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGT 305425 |||||||| ||| || ||||| ||| | | | ||||| || | ||| || Sbjct 353511 AGTATGATGGGGCATCGTGTTAAAGTGTTACCATGGTCTACATTCCGTATGAATTTAT-- 353454 Query 305426 GCTTGTACG---CCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCT 305482 ||||||| || ||||| || ||||||||||| |||||||||||| | |||||||| Sbjct 353453 -CTTGTACTTCCCCATATAACGCAGATTTTGATGGTGATGAAATGAATTTACATGTACCC 353395 Query 305483 CAATC 305487 ||||| Sbjct 353394 CAATC 353390 >seq3 Length=6096599 Score = 91.5 bits (100), Expect = 3e-13 Identities = 299/457 (65%), Gaps = 32/457 (7%) Strand=Plus/Minus Query 279119 TGTGCTTTATTTCTTACTGAGGGAGATTCTGCTGCTACATTTGCGATTGCTGGTTTATCT 279178 ||| ||||| || | || ||||| || || || | || || | | ||||| | Sbjct 1521664 TGTACTTTAATTTTGACGGAGGGTGACTCGGCCAAATCGTTGGCTGTCTCCGGTTTGGGT 1521605 Query 279179 GTTATTGGTCGTGATAAATATGGCGTATTTCCTTTAAGAGGTAAAGTAATTAATGCTCGT 279238 ||||| ||||| || ||||| || ||||||||| | |||||| || | |||| ||| Sbjct 1521604 GTTATAGGTCGCAATCTTTATGGAGTTTTTCCTTTACGTGGTAAATTATTGAATGTACGT 1521545 Query 279239 GATAAAATCACAACACAGGCTGGTTTAAAGCAAGTAAATGCTAATGCTGAATTGATTAAT 279298 || ||||| |||||| ||| ||| | |||||||| | | |||| Sbjct 1521544 GAAG------CAACA--------TTTAAA-CAATTAACCGAGAATGCTGAGATTAATAAT 1521500 Query 279299 TTAAAACAAATATTGGGATTAGAGCAAGGTAAAAAATA------CAAAGAT-ACATCAAG 279351 || |||| | || ||| | | |||||||| || ||| | || || Sbjct 1521499 CTATGCAAAATTATTGGTTTACAATATAAGAAAAAATATTTAACCATGGATGATATTAAA 1521440 Query 279352 T--TTACGATATGGTAAAATTATTATTTTGACAGACCAAGATTTAGATGGAAGTCACATT 279409 ||||| ||||||||| | || ||| |||| || || ||| |||||| ||| ||| Sbjct 1521439 ACATTACGTTATGGTAAAGTAATGATTATGACTGATCAGGATCAAGATGGTTCTCATATT 1521380 Query 279410 AAAGGATTAATACTTAATTGGGTTGATACTTTCTGGCCAGAATTGTTGAATCAAAATTTT 279469 ||||| ||| || | |||| || | ||| ||||||||||| || | | ||| Sbjct 1521379 AAAGGTTTACTAATAAATTTCGTACACACTAATTGGCCAGAATTATTACGTTTACCATTT 1521320 Query 279470 GTAAGTGTGTTTCAAACACCAATTATTAAGGCAACTAAAGGTAAAAAAGAAGAA---GTA 279526 | | |||| ||| || ||| |||| || || |||| ||||| |||||| | Sbjct 1521319 CTCGAGGAGTTTATAACGCCCATTGTTAAAGCTAC-AAAG--AAAAATGAAGAACTTGCG 1521263 Query 279527 TTTTATTCATTG-CAGAAGTTTGAACAATGGAAAGAT 279562 ||||||||| || ||||| ||||| |||||||| || Sbjct 1521262 TTTTATTCACTGCCAGAA-TTTGAGGAATGGAAAAAT 1521227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186787694829611