Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq53 143 2e-29 seq308 113 3e-20 seq1 100 2e-16 >seq53 Length=1361919 Score = 143 bits (158), Expect = 2e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| ||||||||||| | || || ||||||| |||||||| || Sbjct 1240215 CCACCACGGAGACGCAACACCAAATGCAATGTAGATTCCTTTTGTACATTGTAATCCGAA 1240156 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| |||| || |||||||| || |||||||||||||||||||||||| | || Sbjct 1240155 AGAGTGCGGCCGTCTTCTAATTGTTTGCCAGCAAAAATCAAACGCTGCTGATCTGGAGGA 1240096 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||||||| || |||||| || || ||| | || | || || || ||| || Sbjct 1240095 ATACCTTCTTTATCTTGAATTTT-TGCTTTAACGTTTTCGATAGTATCCGATGGTTCTAC 1240037 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | || || ||||| || || || ||||| |||||||||||||| Sbjct 1240036 TTCCAAAGTAATGGTTTTTCCAGTCAAAGTTTTAACAAAGATCTGCAT 1239989 Score = 138 bits (152), Expect = 7e-28 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | ||||||||| | ||| ||||| ||||| |||||||| || Sbjct 1241561 CCACCGCGGAGACGCAGCACCAAATGCAAAGTTGATTCTTTCTGTATATTGTAATCCGAA 1241502 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| |||| || |||||||| || ||||| |||||||||||||||||| | || Sbjct 1241501 AGAGTGCGACCGTCTTCTAATTGTTTGCCAGCAAAGATCAAACGCTGCTGATCTGGAGGA 1241442 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||||||| || |||||| || || ||| | || | || || || ||| || Sbjct 1241441 ATACCTTCTTTATCTTGAATTTT-TGCTTTAACGTTTTCGATAGTATCTGATGGTTCTAC 1241383 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | || || | ||| || || || |||||||||||||| ||||| Sbjct 1241382 CTCCAAAGTAATGGATTTGCCAGTCAAAGTTTTTACAAAGATTTGCAT 1241335 Score = 129 bits (142), Expect = 4e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | || ||||| ||||| || | || ||||||||||| |||||||| || Sbjct 1232570 CCACCACGCAGACGTAGAACCAAGTGCAATGTTGATTCTTTTTGTATATTGTAATCAGAC 1232511 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | |||||| | || |||| |||||| || ||||| ||||||||||||||||| | || Sbjct 1232510 AATGTGCGCCCATCTTCCAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGATCGGGAGGA 1232451 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | |||||||||||| || || || || |||| || | || || || |||||| Sbjct 1232450 ATACCTTCTTTGTCTTGGATCTT-TGCTTTTACATTTTCAATTGTATCAGATGGTTCCAC 1232392 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| ||||| || || || || ||||| ||||| ||||| Sbjct 1232391 TTCTAAAGTGATTGTTTTGCCAGTCAATGTCTTTACGAAGATTTGCAT 1232344 Score = 129 bits (142), Expect = 4e-25 Identities = 168/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | || ||||| |||||||| ||||| ||| ||||| ||||| |||||||| Sbjct 1234463 ACCACCACGCAGGCGTAAGACCAAATGGAGAGTAGACTCCTTTTGAATGTTATAATCGGA 1234404 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| || || | || ||||||||||| || || || |||||||||||||| ||| | || Sbjct 1234403 GAGAGTACGGCCATCTTCCAATTGTTTACCAGCGAAGATCAAACGCTGCTGGTCTGGGGG 1234344 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||| || || || || | || || | || | ||| ||| | || | Sbjct 1234343 AATACCTTCCTTATCCTGGATCTT-AGCTTTGACGTTTTCAATGGTATCGGAAGGCTCGA 1234285 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| |||||||| || || ||||| || ||||| |||||| Sbjct 1234284 CTTCCAAAGTGATGGTTTTACCGGTCAAAGTTTTGACGAAGATTTGCATA 1234235 Score = 127 bits (140), Expect = 1e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | |||||| ||||| ||||| | || ||||| |||||||||||||| ||| Sbjct 1239987 CCACCGCGCAAACGCAACACTAAATGCAAGGTTGATTCTTTCTGTATGTTGTAATCCGAG 1239928 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || ||||||||||| || || || |||||||||||||| ||| | || Sbjct 1239927 AGAGTGCGACCATCTTCCAATTGTTTACCAGCGAAGATCAAACGCTGCTGGTCTGGGGGA 1239868 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | |||||| || || || || | || ||| | || || |||||| | || || Sbjct 1239867 ATACCTTCCTTATCTTGGATCTT-AGCTTTAACGTTTTCAACAGTGTCGGAAGGCTCTAC 1239809 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | || || ||||| || || || ||||| ||||| || |||||| Sbjct 1239808 CTCCAAAGTAATGGTTTTGCCAGTCAAAGTTTTAACAAAAATTTGCATA 1239760 Score = 122 bits (134), Expect = 6e-23 Identities = 173/240 (72%), Gaps = 4/240 (2%) Strand=Plus/Minus Query 33513 AAAATCGTCA--CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATG 33570 |||||| || ||||| | | ||| ||||||||||| | ||| ||||| ||||| Sbjct 1240455 AAAATCTGCATTCCACCGCGGAGACGCAACACCAAATGCAAAGTTGATTCTTTCTGTATA 1240396 Query 33571 TTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGC 33630 ||||| || ||||| || || |||| |||| ||||| || ||||| |||||||||||| Sbjct 1240395 TTGTAGTCCGAGAGAGTACGACCGTCTTCCAGCTGTTTGCCAGCAAAGATCAAACGCTGC 1240336 Query 33631 TGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC 33689 || ||| | || | ||||||||| || |||||| || | ||| | || | || || Sbjct 1240335 TGGTCTGGAGGAATACCTTCTTTATCTTGAATTTT-TGCCTTAACGTTTTCGATAGTATC 1240277 Query 33690 GCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || ||| || || | || || ||||| || || || ||||| ||||| || ||||| Sbjct 1240276 CGATGGTTCTACCTCCAAAGTAATGGTTTTGCCAGTCAAAGTTTTAACAAATATTTGCAT 1240217 Score = 109 bits (120), Expect = 4e-19 Identities = 87/105 (83%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 33532 AAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGT 33591 ||||||| |||||||| ||||| ||| ||||||||||||||||||||||| || || Sbjct 1234225 AAACGTAGGACCAAATGGAGAGTAGACTCCTTTTGTATGTTGTAATCGGAGAGAGTACGG 1234166 Query 33592 TCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCT 33636 | || ||||||||||| || || || |||||||||||||| ||| Sbjct 1234165 CCATCTTCCAATTGTTTACCAGCGAAGATCAAACGCTGCTGGTCT 1234121 Score = 105 bits (116), Expect = 4e-18 Identities = 155/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 33534 ACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTC 33593 |||||| || ||||| || || |||||||| || || |||||||| || ||||| | Sbjct 1241778 ACGTAAGACTAAATGGAGTGTTGATTCTTTTTGGATATTTTAATCGGACAGAGTGCGCCC 1241719 Query 33594 GTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTT 33653 ||| ||||||||||| || ||||| ||||||||||| ||||| | | | |||||| || Sbjct 1241718 GTCTTCCAATTGTTTGCCAGCAAAGATCAAACGCTGTTGATCGGGAGAAATACCTTCCTT 1241659 Query 33654 GTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGA 33712 || ||||| || || ||| || | || || | || || || | || | Sbjct 1241658 ATCTTGGATTTT-TGCTTTAACCGTTTCGATAGTATCCGACGGCTCTACCTCCAAAGTAA 1241600 Query 33713 TCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | ||||| || || || ||||| |||||||| ||||| Sbjct 1241599 TAGTTTTGCCAGTCAAAGTTTTAACAAAGATTTGCAT 1241563 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | |||||| || |||||||| | || || |||||||| |||||||| || Sbjct 1239760 ACCACCACGCAAACGCAAGACCAAATGCAACGTAGATTCCTTTTGTATATTGTAATCAGA 1239701 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | |||||| |||| || | ||||| || || || || ||||| || |||||| | || Sbjct 1239700 CAATGTGCGCCCGTCTTCTAGCTGTTTACCAGCGAATATTAAACGTTGTTGATCTGGTGG 1239641 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACG-GTGTCGCTTGATTCCA 33700 | ||||| || || ||| || ||| ||||| ||| || ||| | || | Sbjct 1239640 GATTCCTTCCTTATCTTGAATCTTAGCTTT-AACATTCTCAATAGTATCGGAAGGCTCAA 1239582 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | |||| ||||| || || || || || || ||||||||||| Sbjct 1239581 CCTCCAAGGTGACAGTTTTCCCAGTCAATGTCTTCACGAAGATCTGCAT 1239533 >seq308 Length=190705 Score = 113 bits (124), Expect = 3e-20 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 ||||||||| |||||| ||||| | ||||| ||| |||||||| || || ||||| | Sbjct 86620 CACCACCTCGCAAACGCAACACAAGATGTAACGTGGATTCTTTTTGAATATTATAATCCG 86679 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 | | |||||| | || |||||||||||||| || || ||||| || || || || | | Sbjct 86680 ATAATGTGCGACCATCTTCCAATTGTTTTCCAGCGAAGATCAATCGTTGTTGGTCGGGTG 86739 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | || |||||||| ||| || |||| |||| || | || || | || Sbjct 86740 GAATTCCCTCTTTGTCCTGAATCTTGGCTTTC-ACATTTTCAATAGTATCAGAGGGCTCG 86798 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || |||| || || || || || || | ||||||||||| ||||||||| Sbjct 86799 ACCTCAAGAGTAATGGTCTTGCCCGTAAGGGTTTTTACAAAAATCTGCATA 86849 >seq1 Length=10097680 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||||| |||||| | |||||||| | || ||||| ||||| |||||||| || Sbjct 7547616 ACCACCTCGCAAACGAAGTACCAAATGCAATGTCGATTCTTTCTGTATATTGTAATCAGA 7547557 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || || | || ||||||||||| || || || |||||||| ||||||||| | || Sbjct 7547556 CAAAGTCCGCCCATCTTCCAATTGTTTGCCAGCGAAGATCAAACGTTGCTGATCTGGAGG 7547497 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || |||||||| |||||| | | |||| || | |||||| | || | Sbjct 7547496 AATGCCCTCTTTGTCCTGAATTTT-GGCCTTGACATTTTCAATAGTGTCGGAAGGCTCAA 7547438 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | || || ||||| || || | ||||| || || || ||||| Sbjct 7547437 CTTCCAAAGTAATTGTTTTGCCAGTAAGAGTTTTAACGAAAATTTGCAT 7547389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328697385961920