Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq1 98.7 2e-15 seq53 93.3 1e-13 seq308 86.0 1e-11 >seq1 Length=10097680 Score = 98.7 bits (108), Expect = 2e-15 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || ||||| || ||||||||||| || ||| ||||| | ||| Sbjct 7547404 AAAACTCTTACTGGCAAAACAATTACTTTGGAAGTTGAGCCTTCCGACACTATTGAAAAT 7547463 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| || ||||| || ||||| || ||| || || ||| | | |||||| Sbjct 7547464 GTCAAGGCCAAAATTCAGGACAAAGAGGGCATTCCTCCAGATCAGCAACGTTTGATCTTC 7547523 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || || || ||||||||||| |||||||| | |||||||| | |||||||| || Sbjct 7547524 GCTGGCAAACAATTGGAAGATGGGCGGACTTTGTCTGATTACAATATACAGAAAGAATCG 7547583 Query 206365 AC 206366 || Sbjct 7547584 AC 7547585 >seq53 Length=1361919 Score = 93.3 bits (102), Expect = 1e-13 Identities = 136/190 (72%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 |||||| | || || ||||| |||||||||||||| || ||| || || | ||| Sbjct 1234250 CAAAACTTTGACCGGTAAAACCATCACTTTGGAAGTCGAGCCTTCCGATACCATTGAAAA 1234309 Query 206244 AGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCT 206302 || ||||| ||||| || || || ||||| ||| || ||| || | | |||| Sbjct 1234310 CGTCAAAGC-TAAGATCCAGGATAAGGAAGGTATTCCCCCAGACCAGCAGCGTTTGATCT 1234368 Query 206303 TCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGT 206362 |||| || || || ||||||||||| | ||| | ||||||| ||| | || || |||| Sbjct 1234369 TCGCTGGTAAACAATTGGAAGATGGCCGTACTCTCTCCGATTATAACATTCAAAAGGAGT 1234428 Query 206363 CTACTCTTCA 206372 ||||||| || Sbjct 1234429 CTACTCTCCA 1234438 Score = 89.7 bits (98), Expect = 1e-12 Identities = 131/183 (72%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || || ||||| || |||||||| || || ||| ||||| || ||| Sbjct 1239776 AAAACTTTGACTGGCAAAACCATTACTTTGGAGGTAGAGCCTTCCGACACTGTTGAAAAC 1239835 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| || ||| ||||| || ||||| ||| || ||| || | | ||||| Sbjct 1239836 GTTAAAGCTAA-GATCCAAGATAAGGAAGGTATTCCCCCAGACCAGCAGCGTTTGATCTT 1239894 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||| || || || ||||||||||| | ||| | | ||||||||| | |||||||| || Sbjct 1239895 CGCTGGTAAACAATTGGAAGATGGTCGCACTCTCTCGGATTACAACATACAGAAAGAATC 1239954 Query 206364 TAC 206366 || Sbjct 1239955 AAC 1239957 Score = 84.2 bits (92), Expect = 5e-11 Identities = 137/195 (70%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| | || |||||||| || ||||||||||| ||| || || Sbjct 1239992 CAGATCTTTGTTAAAACTTTGACTGGAAAAACCATTACTTTGGAAGTAGAACCATCGGAT 1240051 Query 206233 ACAGTCG-AATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || ||| || | |||||||||| |||||||| |||||||| ||| || || || Sbjct 1240052 ACTATCGAAAACGTTAAAGCAAAA-ATTCAAGATAAAGAAGGTATTCCTCCAGATCAGCA 1240110 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | | || || || || || || || ||||| || | ||| | | |||||||| || Sbjct 1240111 GCGTTTGATTTTTGCTGGCAAACAATTAGAAGACGGCCGCACTCTTTCGGATTACAATGT 1240170 Query 206352 CCAGAAAGAGTCTAC 206366 || || || ||||| Sbjct 1240171 ACAAAAGGAATCTAC 1240185 >seq308 Length=190705 Score = 86.0 bits (94), Expect = 1e-11 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| || || || || || || ||| | || || || ||||| Sbjct 86845 CAGATTTTTGTAAAAACCCTTACGGGCAAGACCATTACTCTTGAGGTCGAGCCCTCTGAT 86786 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || | ||| || ||||| || |||||| || ||||| |||||| || ||| || Sbjct 86785 ACTATTGAAAATGTGAAAGCCAA-GATTCAGGACAAAGAGGGAATTCCACCCGACCAACA 86727 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | || | |||||||| ||||| || ||||||||||| | || || | ||||| || | Sbjct 86726 ACGATTGATCTTCGCTGGAAAACAATTGGAAGATGGTCGCACATTATCGGATTATAATAT 86667 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTG 206382 || ||||| || || | || ||||| ||| Sbjct 86666 TCAAAAAGAATCCACGTTACATCTTGTGTTG 86636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181795800427571