Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_025434.1 Length=62699 Score E Sequences producing significant alignments: (Bits) Value seq439 197 6e-46 >seq439 Length=76666 Score = 197 bits (218), Expect = 6e-46 Identities = 404/598 (68%), Gaps = 2/598 (0%) Strand=Plus/Minus Query 1782 CCATTGCTCCCCAAATACAAAACTAATTTCAGCCAGTGCTTCGTCCATTTTTTCGATGAA 1841 ||| ||||| ||||| ||| | || |||||| | || |||||| |||| || || Sbjct 70427 CCACTGCTCGCCAAAGGTAAAGCCAAGTTCAGCTAACGCCATATCCATTCTTTCTATAAA 70368 Query 1842 CTCCGGCACCATCTCGTCAAAACCAGCCATGTATTTTTCATCCCGCTCGACCACGACATA 1901 ||| || || ||| ||||| | |||||||| || || || || | | ||| | Sbjct 70367 CTCTGGTACGGACTCTTCAAATTTTGAAATGTATTTATCGTCTCGTTCAATAATGACGTT 70308 Query 1902 ATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCGAAGTACCAGGCATCTTTTCG 1961 || || |||||||| ||||| || ||||||||||| || || | ||| || ||||| | Sbjct 70307 GTGAAGTCCTTCACGTTTCATTCGAGGGTCATAGTTAGCAAAATGCCATGCGTCTTTCCC 70248 Query 1962 AGTCACCCACATGCTGAATTGCACCTGGGCCATGTAAGCTGATTTTATGGCCTCGAAACC 2021 || ||||||||||| || || ||||| ||||| || | ||||| ||| | || || || Sbjct 70247 CGTAACCCACATGCTAAACTGGACCTGAGCCATATATTCCGATTTGATGCCGTCAAAGCC 70188 Query 2022 ACCGAGCCGGAATTTCATGAAATCCCGGGAGGTAAACGGACATTTCAGCTCAAGGCCGTT 2081 | || | || || || || || || || ||||| ||||| || | ||||| || Sbjct 70187 ATTCAGTCTAAAATTAATAAAGTCGCGTGATGTAAATGGACACTTTAATTCAAGTCCCAG 70128 Query 2082 GCCGTCACTGCATAATCCATCCGGAGAGCAGGCGGTACGCATACTTTCGTCGCGATAGAT 2141 || ||||| || ||||| || ||||| || ||||||| ||||| | || Sbjct 70127 CCCATCACTACAGTCGCCATCGGGGGAGCACGCTACACGCATATCGTCGTCCTTGAATAT 70068 Query 2142 GATCGGGGATTCAGTAACATTCACGCCGGAAGTAAACTCAAACAGGGCTCTGGCGTCGTT 2201 ||| ||| || |||| | | || | ||| ||||||||||| ||| || | | Sbjct 70067 GATGGGGACGTCGATAACGGTTAACCCTGTAGTGAACTCAAACAGTCGTCTTGCTACCTC 70008 Query 2202 CTCGTACTGTTTTCCCCATGCCAG-GGCTTTGGCGTTAACTTCCGGGGCCACACCCGTGC 2260 |||| | |||||||||| | || ||| || || || ||||| || | || || | Sbjct 70007 TTCGTTTTCTTTTCCCCATTCTAGCGGCCTT-GCCTTCACTTCGGGAGATTGCCCGGTAC 69949 Query 2261 AGACCTCAGCCAGCAGGGTGTGGAAGTAGGACATTTTCATGTCAGGCCATTTCTTTCCGG 2320 | | ||| || | ||| ||| |||||| ||| ||| | || | |||||| || || | Sbjct 69948 AAATCTCGGCAATCAGCTTGTTGAAGTAAGACCGCTTCGTATCCGTCCATTTGTTGCCTG 69889 Query 2321 AGCGGGGTTTGGCTATCACGTTGTGAACTTCTGAAGCTGTGATGCCCCCGAGCCGTAA 2378 | || || ||| |||||| | | | ||||| || || ||| | || || || || Sbjct 69888 AACGTGGGCTGGAAATCACGCAGGAAGCCTCTGAGGCGGTTATGGCGCCAAGGCGCAA 69831 Score = 100 bits (110), Expect = 1e-16 Identities = 82/100 (82%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 17288 CTCATCCTCTGGACAGAACGCGGAGCAGCCCGTCACGCAAAAATGCTCGAAACTGATCAG 17347 |||||||||||||||||||||||||| || | || || || ||| | || |||||| | Sbjct 38551 CTCATCCTCTGGACAGAACGCGGAGCCGCTTGACATGCCAAGATGTTTGAGACTGATAAA 38610 Query 17348 GCATGGGAAGTGTTCGAAAAACTGGAAGACTGCTATTTCA 17387 ||||||||||| ||||| |||||||||| || || |||| Sbjct 38611 GCATGGGAAGTATTCGAGCAACTGGAAGATTGTTACTTCA 38650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 200507965385260