Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq148 138 1e-27 seq53 113 4e-20 seq1 105 6e-18 seq308 82.4 7e-11 >seq148 Length=545759 Score = 138 bits (152), Expect = 1e-27 Identities = 610/954 (64%), Gaps = 29/954 (3%) Strand=Plus/Minus Query 146680 TTAAACGATTGGCTTTGATCTATGAAAGCGTTGCGGTCGGCCGCCATCTCAATCATGCGT 146739 |||||||||||||||||||| ||||||||| ||| ||| | ||||| ||||| | Sbjct 221531 TTAAACGATTGGCTTTGATCGATGAAAGCGCCGCGATCGACAGCCATGTCAAT------T 221478 Query 146740 TTTGTCTTCA------TTTCCCAAGCGGTTTTGTACAGCCCCTTAACGCTATCTGGAATA 146793 ||| ||||| |||||||| | ||||| || | | || | | | || || Sbjct 221477 GTTGACTTCAGTGAAATTTCCCAAACTGTTTTATATAATTCTTTTATGTCTTTAGGTATG 221418 Query 146794 CCTTCAATGTTTTGAATAGAGCCCT--TGTGCGCAAAAATAGTGTTTCGTATTTCGGGCG 146851 |||| || ||||| || || || ||||| || || ||| |||| || ||| Sbjct 221417 GCTTCGATTTTTTGTATTGAACCACGATGTGCCCATAATAAGTTTTTC--ATGTCGCCAT 221360 Query 146852 TGTAAAGGTTTAGTTTAATGAGGTCATCAATTAAATACTGATTGACCACT-TGAAACTCG 146910 | |||| || | | | | || | || |||| ||||||||||| ||||| || Sbjct 221359 TCCAAAGATTCAACTCCGTCAAATCTTTAAGCAAATGATGATTGACCACAATGAAA-TCA 221301 Query 146911 CCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAGGCTCAAAAGACTCATTATTG 146970 || | | ||||||| ||| || || ||| | |||||||| || || || ||| Sbjct 221300 CCAGATAATACACGTCGTGTATAAACGTTTGAAGTATACGGCTCAAAGGATTCGTTGTTG 221241 Query 146971 CCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACCAACAATGAATTTCGCAGA 147030 || | ||||| || || | ||| |||||||| ||||||||||| ||||| |||| | Sbjct 221240 CCAAGAATTTGAGCAGTAGATGCCGTAGGCATTGGGGCCACCAACAAAGAATTACGCACA 221181 Query 147031 CCGTACGCACGGATGTTGTCCTTCAAAGTTTGCCAGTCCCACATCGACGAG--GGCGTCA 147088 || | ||||| || || | || ||| ||||| | || || ||| || Sbjct 221180 CCATGATTTTTGATGTCATCTTTAAGAGCCGCCCAATCCCAAA--GATCAGTAGGCTTCT 221123 Query 147089 CGTTCCACATGTCGTACTGGAGCACTCCTCGACTGGCGGGACTGCCAGCGAACGTAGTGT 147148 |||||||||||| || || || | ||| || | || || || | | || || Sbjct 221122 TGTTCCACATGTCATATTGAAGAATACCTTTGCTAACTGGGCTACCTTCATATGTTTCGT 221063 Query 147149 AGCTTCCGTCGCGCTGCGCCAATTCACAGCTTGCCTCGAGCGCTCCATAGTATATGGTTT 147208 | || | | | ||||| |||||||| ||||| | || || || |||||||||| Sbjct 221062 ACGGGCCATATTGTTTGGCCAACTCACAGCTAGCCTCTAAAGCACCGTAATATATGGTTT 221003 Query 147209 CGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCGCTCTCGTAAGGCATACGCAGAAGCA 147268 || ||||||| |||| | || | |||||| || || || ||||| | | Sbjct 221002 CGAAAATTTGTTGATTTAATAGAACAGCATTTTCGCTTTCATATGGATAACGCATTAAAA 220943 Query 147269 CAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATAGGTCGATGCTTTTCGTTGCTGC 147328 || || || || || || |||| || | || || || || || || | Sbjct 220942 TTAATGCGTCAGCAAATCCTTGGACGCCTATACCAATTGGACGGTGACGCAAATTAGATC 220883 Query 147329 GCTTCGCGCTCGCTATGGGATAGTGGTTGCGATCAATAATCTTGTTGAGGTTACGCACTA 147388 || || || | ||||| | ||| ||||| || ||||||||||| | || Sbjct 220882 TTTTGGCTTCCGGCAACGGATAATAGTTAATGTCAATTATTTTGTTGAGGTTCCTTGTTA 220823 Query 147389 CAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCATAAGTCCCGT-CTTCGACACGTACG 147447 || || || | | ||| | ||| | ||||| || | | | | | |||| | Sbjct 220822 TAAGCTTCGTAACTTCTTTCAATTTGTTAAAATCGTATTTTTTATCCGTAGTCACGAA-- 220765 Query 147448 CATTGGTTCACGGCGATAGACGCCAGATTGCAGACGGCCGTCTCTTCGGCGTCGCTGTAC 147507 ||| ||| | || || || ||||| ||||| || || | || || || |||| Sbjct 220764 CAT--GTTTAATGCAATCGAGGCCAGGTTGCAAACTGCAATTTCATCAGCCGAAGTGTAT 220707 Query 147508 TGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAA-ATTTTGCTGATTGCT 147566 | || ||||| | |||| ||| || ||||||| | | |||| || || ||||| || Sbjct 220706 TCGACAATTTCTGTACACAAGTTACTAGATTTTAT-AGTACCAATGTTCTGTTGATTACT 220648 Query 147567 TTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTG 147620 || |||||||| || |||||| | ||||| || || || ||||| |||| Sbjct 220647 CTTGCGATTGCAAGCATCTTTGTAAAGCATATAAGGAGTTCCAGTCTCCGCTTG 220594 >seq53 Length=1361919 Score = 113 bits (124), Expect = 4e-20 Identities = 158/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| ||| || |||||||| | | ||||| ||||||||||| || ||| | || Sbjct 1234457 ACGCAGGCGTAAGACCAAATGGAGAGTAGACTCCTTTTGAATGTTATAATCGGAGAGAGT 1234398 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 ||| |||||| | |||||||| | |||| | |||||| || ||||| || || || Sbjct 1234397 ACGGCCATCTTCCAATTGTTTACCAGCGAAGATCAAACGCTGCTGGTCTGGGGGAATACC 1234338 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||| ||||| || || ||| | | ||| | ||||||| ||||| ||||| | Sbjct 1234337 TTCCTTATCCTGGATCTTAGCTTTGACGTTTTCAATGGTATCGGAAGGCTCGACTTCCAA 1234278 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | |||||||| |||| |||||| | ||| || ||||| Sbjct 1234277 AGTGATGGTTTTACCGGTCAAAGTTTTGACGAAGATTTGCAT 1234236 Score = 113 bits (124), Expect = 4e-20 Identities = 158/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 |||||| ||||| |||||||| | | || || ||||| || ||||| || || || Sbjct 1239754 ACGCAAACGCAAGACCAAATGCAACGTAGATTCCTTTTGTATATTGTAATCAGACAATGT 1239695 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 ||| ||||| ||||||||||| | | |||| ||| ||||||||||| || || || Sbjct 1239694 GCGCCCGTCTTCTAGCTGTTTACCAGCGAATATTAAACGTTGTTGATCTGGTGGGATTCC 1239635 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||| ||||| ||| || ||| | | || | |||||||| ||||| || || | Sbjct 1239634 TTCCTTATCTTGAATCTTAGCTTTAACATTCTCAATAGTATCGGAAGGCTCAACCTCCAA 1239575 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | ||||| ||||||| || || | ||| |||||||| Sbjct 1239574 GGTGACAGTTTTCCCAGTCAATGTCTTCACGAAGATCTGCAT 1239533 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| |||||||| | |||| ||||| || || |||||||| | ||||| Sbjct 1240431 CGCAACACCAAATGCAAAGTTGATTCTTTCTGTATATTGTAGTCCGAGAGAGTACGACCG 1240372 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| |||||||| || | | |||| | |||||| || |||||||| || ||||||||| Sbjct 1240371 TCTTCCAGCTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCTTTA 1240312 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||||||| || | | ||| | |||||| | || || || || | || | Sbjct 1240311 TCTTGAATTTTTGCCTTAACGTTTTCGATAGTATCCGATGGTTCTACCTCCAAAGTAATG 1240252 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| ||||||| |||||| | || || ||||| Sbjct 1240251 GTTTTGCCAGTCAAAGTTTTAACAAATATTTGCAT 1240217 Score = 105 bits (116), Expect = 6e-18 Identities = 157/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 |||||| || || |||||||| | | || || ||||| || ||||| || || || Sbjct 1232793 ACGCAAACGTAAGACCAAATGCAACGTAGATTCCTTTTGTATATTGTAATCAGACAATGT 1232734 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 ||| ||||| | ||||||||| | |||||| ||||||||||||||| || || || Sbjct 1232733 GCGCCCGTCTTCTAACTGTTTACCAGCGAAGATTAAACGCTGTTGATCTGGTGGGATTCC 1232674 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||| ||||| ||| || || | | || | |||||||| ||||| || || | Sbjct 1232673 TTCCTTATCTTGAATCTTAGCCTTAACATTCTCAATAGTATCGGAAGGCTCAACCTCCAA 1232614 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || | ||||| ||||||| || || | ||||| |||||| Sbjct 1232613 GGTGATAGTTTTGCCAGTCAATGTCTTGACAAAAATTTGCATG 1232571 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 || || || ||||| | |||| |||||||| || || || ||| || || ||| Sbjct 1241777 CGTAAGACTAAATGGAGTGTTGATTCTTTTTGGATATTTTAATCGGACAGAGTGCGCCCG 1241718 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| | ||||| || | | |||| | |||||||||||| |||| || ||||| ||| Sbjct 1241717 TCTTCCAATTGTTTGCCAGCAAAGATCAAACGCTGTTGATCGGGAGAAATACCTTCCTTA 1241658 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || |||||| ||| | | ||| | |||||| | |||||| || || | || | Sbjct 1241657 TCTTGGATTTTTGCTTTAACCGTTTCGATAGTATCCGACGGCTCTACCTCCAAAGTAATA 1241598 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| ||||||| |||||| | || || ||||| Sbjct 1241597 GTTTTGCCAGTCAAAGTTTTAACAAAGATTTGCAT 1241563 Score = 102 bits (112), Expect = 8e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| |||||||| | | || || ||||| | ||||| || | || || Sbjct 1240203 CGCAACACCAAATGCAATGTAGATTCCTTTTGTACATTGTAATCCGAAAGAGTGCGGCCG 1240144 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| | ||||| || | | | || | |||||| ||||||||||| || ||||||||| Sbjct 1240143 TCTTCTAATTGTTTGCCAGCAAAAATCAAACGCTGCTGATCTGGAGGAATACCTTCTTTA 1240084 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||||||| ||| | | ||| | |||||| | || || ||||| | || | Sbjct 1240083 TCTTGAATTTTTGCTTTAACGTTTTCGATAGTATCCGATGGTTCTACTTCCAAAGTAATG 1240024 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 ||||| ||||||| |||||| | || ||||||||| Sbjct 1240023 GTTTTTCCAGTCAAAGTTTTAACAAAGATCTGCATG 1239988 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| |||||||| | |||| ||||| || || ||||| || | || || Sbjct 1241549 CGCAGCACCAAATGCAAAGTTGATTCTTTCTGTATATTGTAATCCGAAAGAGTGCGACCG 1241490 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| | ||||| || | | |||| | |||||| ||||||||||| || ||||||||| Sbjct 1241489 TCTTCTAATTGTTTGCCAGCAAAGATCAAACGCTGCTGATCTGGAGGAATACCTTCTTTA 1241430 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||||||| ||| | | ||| | |||||| | || || || || | || | Sbjct 1241429 TCTTGAATTTTTGCTTTAACGTTTTCGATAGTATCTGATGGTTCTACCTCCAAAGTAATG 1241370 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | ||| ||||||| |||||||| || || ||||| Sbjct 1241369 GATTTGCCAGTCAAAGTTTTTACAAAGATTTGCAT 1241335 >seq1 Length=10097680 Score = 105 bits (116), Expect = 6e-18 Identities = 156/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTA 131962 ||||| || | |||||||| | | || ||||| || || ||||| || || || Sbjct 7547609 CGCAAACGAAGTACCAAATGCAATGTCGATTCTTTCTGTATATTGTAATCAGACAAAGTC 7547550 Query 131963 CGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022 ||| |||||| | ||||| || | |||| | ||| || ||||||||||| ||||| Sbjct 7547549 CGCCCATCTTCCAATTGTTTGCCAGCGAAGATCAAACGTTGCTGATCTGGAGGAATGCCC 7547490 Query 132023 TCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACC 132082 ||||| || |||||| || | | ||| | ||| |||| ||||| ||||| | Sbjct 7547489 TCTTTGTCCTGAATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCTCAACTTCCAAA 7547430 Query 132083 GTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | ||||| ||||| |||||||| | |||||| ||||| Sbjct 7547429 GTAATTGTTTTGCCAGTAAGAGTTTTAACGAAAATTTGCAT 7547389 >seq308 Length=190705 Score = 82.4 bits (90), Expect = 7e-11 Identities = 153/222 (69%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGT-CGCTCATGGT 131961 ||||| ||||| || | ||||| | || ||||||||||| || || | || | || || Sbjct 86628 CGCAAACGCAACACAAGATGTAACGTGGATTCTTTTTGAATATTATAATCCGATAAT-GT 86686 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || |||||| | ||||| || | |||| | || ||||| || || || || || Sbjct 86687 GCGACCATCTTCCAATTGTTTTCCAGCGAAGATCAATCGTTGTTGGTCGGGTGGAATTCC 86746 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||||| || ||| || ||||| | ||| | |||||| | ||||| || || | Sbjct 86747 CTCTTTGTCCTGAATCTTGGCTTTCACATTTTCAATAGTATCAGAGGGCTCGACCTCAAG 86806 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | || || || || || ||||||| ||||||||||| Sbjct 86807 AGTAATGGTCTTGCCCGTAAGGGTTTTTACAAAAATCTGCAT 86848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476601363936360