Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_026014.1 Length=35814 Score E Sequences producing significant alignments: (Bits) Value seq679 491 1e-134 seq552 152 1e-32 >seq679 Length=8099 Score = 491 bits (544), Expect = 1e-134 Identities = 812/1159 (70%), Gaps = 26/1159 (2%) Strand=Plus/Minus Query 31591 AGCTTGTAGTAGGTGTTTTTAATGGCATAAGTGTGTGATGTGGCTTCGCCCTGTTTGGCT 31650 |||||||| ||||||||||| ||||| ||| || || ||| |||| ||| ||| | Sbjct 1167 AGCTTGTAATAGGTGTTTTTCATGGCGTAACTGATGGAGGTGTCTTCTCCCATCTTGCTT 1108 Query 31651 TCCCCCATATCAATTTCCGTCACACGTCCGCGCATTTCGACTTCATACAG---GTCGCTT 31707 || || || ||||| || | ||| ||||| | || || ||| ||| |||||| Sbjct 1107 TCACCACCGTCTATTTCAGTGATACGCCCGCGTAGCTCAACCTCAACCAGCATGTCGCTG 1048 Query 31708 TCTGCATCGGTGTAGTATTCACCCGCAAAACGCAGCAGTGTGCCGTCAATCGTGCCGCCA 31767 || | |||||| || | || ||||| || | | || |||| ||| ||| | Sbjct 1047 TCG---TTGGTGTAATAGGCCCCGGCAAAGCGAAAACGGGTTTCGTCGATCTTGCTGTAG 991 Query 31768 TAC-TTAAG-GAACAGCTCACGAACTGCGCCCCCCATGACAAAGCTCGCATCAAGCGCGG 31825 ||| |||| || | ||| | || ||||| || | | | | || |||||| Sbjct 990 TACGTTAACAGATC--CTCTTTTTCCAGACCGCCCATCACCATGGTGGTGTCTAGCGCGC 933 Query 31826 AGTCGTCCAGGCCGAGATCAATACTTACCGCCCCCATCATGCCACCACCCCGGTAGCTGT 31885 | || | || ||||| | || | |||||||||||||| || || | | Sbjct 932 CGCTATCAAACCCCAGATCCACGGCGACAGATCCCATCATGCCACCCGCCTGGAAATCTT 873 Query 31886 CGGTTTTGCGCGTCAGCTTAGGCAGAGTGACGGACGTCACCTTACCCACTTCGTTTTCAC 31945 | ||||||||||||||||| ||||| || || || || ||||| || | ||| | | Sbjct 872 CCGTTTTGCGCGTCAGCTTTGGCAGCGTCACCGAGGTGACCTTGCCGATGCAGTTGTTGC 813 Query 31946 CATCCACAAA-CAGCGTAAAAAAGC-GAAGATGTTT---TGGCACAGCCATCAG----GC 31996 | | |||||| ||| |||| || || | |||| ||| | |||||| | || Sbjct 812 CGTTCACAAAGCAG-GTAA----GCTGATGCAGTTTATGTGGAATAGCCATGGGTTATGC 758 Query 31997 ACCTCCCAGCACCGCAAATGCGGGTTCAAAGTATTCATCAGTAAACGTCTGGTAAAGCTC 32056 ||||||||| | || || || |||| || ||||| || ||||||||||| ||| Sbjct 757 TCCTCCCAGCGAAGAGAACGCCGGACCAAAATAGTCATCCGTGAACGTCTGGTATAGCGT 698 Query 32057 CATGTCTTCCAGTGGCGGAACGGGCGTATATTTGTAGCGAATACGCACACGTCCCTGACG 32116 ||||| |||||| ||||| || ||||| || ||||| || |||||||| ||||| || Sbjct 697 CATGTTTTCCAGCGGCGGTACCGGCGTGTAGTTGTATCGGATACGCACCTCGCCCTGCCG 638 Query 32117 TAAATCCGTGGTGCTGTTATCCACCACGTCATACCAGCACTCCGCGCCAATCAGTTTCC- 32175 || | || || |||||||| | ||| ||||||| || |||||||| | Sbjct 637 TAGCGCGGTTGTCGGGTTATCCAGAATATCAAACCAGCAGGTGGCACCAATCAGCCGCTG 578 Query 32176 CGGCAGTAACCAGTGAATCCAGTTTTGCCCTGATGGCACTGATAACATCCTTCACGTTCG 32235 | || || ||||| | ||| || | | ||| | |||| |||||||| ||||| | Sbjct 577 CTGC-GTCACCAGGGCGCTCAGCTTGCCGCGAATGCCGCTGACCACATCCTTGACGTTGG 519 Query 32236 CAGGCGTCAGTGGACTGTCGATGGTTTCAAACTGCGCTTCCGCAATTGAATCAGCCAGCA 32295 |||||||| || | ||| | || |||||||||||| || ||||| | || || || | Sbjct 518 TCGGCGTCAGCGGCCCGTCAACGGCTTCAAACTGCGCCTCGGCAATGGTGTCCGCGAGAA 459 Query 32296 CCTGTGCGGTTCGGGTATACACCTCAAAGATGTAGGCGTTCGTTTCCGGTGTGCGGTTGC 32355 || || || ||||||||| |||| || || ||||||| || || | |||||||| | Sbjct 458 TTTGCGCCGTGCGGGTATACCCCTCGAAAATAGAGGCGTTGGTGTCGGTCGTGCGGTTTC 399 Query 32356 CCCAGAAGCGGAACCCGTTGCGACGAATAATGGTCGTGATTTCTTTGTTGTTGAGGCTGT 32415 ||||||||||||| |||||||| |||| || || || ||||||||||| ||| | Sbjct 398 CCCAGAAGCGGAATCCGTTGCGCTTGATAAGCGTGGTAATGTCTTTGTTGTTCAGGGCAT 339 Query 32416 TGGCATCGCTGTCTTCGGCCTGCAACGACCAGAACACATGCCTCGACATCCCCAGCACAT 32475 |||||||||| ||||| ||||| | |||||||||||||| | | |||||||| |||| Sbjct 338 TGGCATCGCTTTCTTCCGCCTGAAGCGACCAGAACACATCATGCAAGATCCCCAGTACAT 279 Query 32476 TTTTAACCGGAACGTTGGACAGTGATTTGTGCCATCCCTGCTCATGGTCAATGTACGCAC 32535 | |||| |||||||| | ||||| ||||| ||||||| | ||| || |||| Sbjct 278 GACTGACCGCCACGTTGGATAAGGATTTATGCCACCCCTGCTGACTGTCGATAAGGGCAC 219 Query 32536 GAAGGCCGCACGCATAGGCAGACGCGGGGAACGTTTCGTTTTTGCCACTTTTCGGGTTGT 32595 | ||||||||||||||||| || || |||||||| || |||||||| || | |||||||| Sbjct 218 GCAGGCCGCACGCATAGGCGGAGGCCGGGAACGTCTCATTTTTGCCGCTCTGCGGGTTGT 159 Query 32596 AGGCGATGAAGTCCGGCCATAAGAGCATCACCTCACGTTCGTTGAATTTCTGGCGGTAGG 32655 ||||||| || || ||||| | ||||||| || || | | | | ||||||| Sbjct 158 AGGCGATAAAATCGGGCCAGATAAGCATCAGTTCCCGGTAGGCAACCGTTGCGCGGTAGC 99 Query 32656 TAATCGCCTCAGCCATCGTGTTACAGCCGTGACATGAGGCATACACAAACGCGCGCAGTT 32715 | || ||||| ||| | || || ||||| || || |||||| ||||| |||||||||| Sbjct 98 TGATGGCCTCCGCCTTGGTTTTGCAGCCATGGCAGCCGGCATATACAAAGGCGCGCAGTT 39 Query 32716 TACCTGCAATCACGCACAG 32734 | || ||||||||||| Sbjct 38 TTTGCGCTATCACGCACAG 20 Score = 471 bits (522), Expect = 1e-128 Identities = 656/911 (72%), Gaps = 11/911 (1%) Strand=Plus/Minus Query 33453 TCACTGACCGACAACCGGGGATTTGAAGCGGACCAGCTCACCATCACGCTGGATGATGCG 33512 || ||||| || |||||||| ||||| || |||||| | || | | | || ||| Sbjct 2088 TCGCTGACGGATAACCGGGGCTTTGACGCTGACCAGTTAACGCTTTCCGTTGACGATAGC 2029 Query 33513 GATGGTCAGTTGCAGCTACCGCCACGGGGCGC-GCGCCTGACGGTTCTCATTGGCTGGAA 33571 ||||| | || || |||||| | || | | || || || || ||| |||||| Sbjct 2028 GATGGACGCCTGGCACTGCCGCCAAGAGGGGTTGAGCTTGCCGTGTC-CATAGGCTGGTT 1970 Query 33572 AGGAGAACCGCTGACAGAAAAAGGCACTTACATTGTTGATGAAATCGCTCACGAAGGACC 33631 || || ||||| | | || || || | |||||||| | | |||||||| || Sbjct 1969 GGGGGAGCCGCTCATTTACAAGGGGCGCTATACCGTTGATGAGGTGTCACACGAAGGGCC 1910 Query 33632 GCCGGACAGGCTGACTGTTTCAGCCAGAAGCGCAGATTTTCGGGATGAATTTAACGTTAA 33691 ||||| | | | || | ||| | ||||| |||||||| ||||| | ||||| || Sbjct 1909 ACCGGATACGATAGGCATTACCGCCCGCAGCGCTGATTTTCGTGATGAGCTGAACGTCAA 1850 Query 33692 ACGTGAGGTGTCCTGGCATGATGTGACCGTTGAGCGTGTGGTATCCGCCATCGCTCATCG 33751 || || || ||||||||||| ||||||||||| || ||||| ||||| ||||| ||||| Sbjct 1849 GCGGGAAGTCTCCTGGCATGACGTGACCGTTGAACGCGTGGTCTCCGCTATCGCGCATCG 1790 Query 33752 GTATGGTCTGAAACCGCAAATCAGCGAAATGCTGATGGATATCGAAATCGACCACGCCGA 33811 || || |||||| |||| || ||||| || ||||||| || ||||| ||||||||||| Sbjct 1789 CTACGGCCTGAAAGCGCAGATAAGCGACCTGTTGATGGACATTGAAATAGACCACGCCGA 1730 Query 33812 CCAGACCGAAGAAAGCGACATGTCCTTCCTTACGCGCATGGCGGAAATGCTGGGCGCAAT 33871 |||||| | |||||||| ||||| || || || ||||||||||| ||||||||||| || Sbjct 1729 CCAGACACAGGAAAGCGATATGTCGTTTCTGACCCGCATGGCGGACATGCTGGGCGCGAT 1670 Query 33872 CACCACGGTAAAAAGCGGTAATCTGTTATTCATCATGCCCGGTGGTGGCGTGAACGCACA 33931 ||||| |||||| ||| || | || || |||| || || ||||| | || Sbjct 1669 AGCCACGATAAAAAACGGCTGGCTACTGTTTATTCTGCCGGGCGGCGGCGTCAGTGCGTC 1610 Query 33932 GGGCCAGCCGTTGCCATCGTTCGCCATCACACGCAGCAGCGGCGATCGCCATCAGTTCCG 33991 || || || |||| || | ||| || |||| || ||||| || || | || || Sbjct 1609 CGGTAAGGCGCTGCCTTCCGCCAGCATTACGCGCATGAGTGGCGACCGACACCGTTTTCG 1550 Query 33992 CATTGCTGACCGCGAGGCGTATACGGGTGTACGCGCCTACTGGCTTGATCTTAATTACGG 34051 ||| || || || || || ||||| || || || ||||||||||| ||||| |||| || Sbjct 1549 CATCGCGGATCGGGATGCCTATACCGGCGTGCGGGCCTACTGGCTGGATCTGAATTTTGG 1490 Query 34052 gaaaaagaaaaaagtcagcgtgaa---acgccg--ca--aaccgaaaaaagagaaaagCA 34104 |||||||||||||||||||| || ||| || || | ||| | | || |||| Sbjct 1489 CAAAAAGAAAAAAGTCAGCGTCAAAGCACGTCGGCCAACAGCCGCCGACCG-CAACAGCA 1431 Query 34105 GCAGCCGTGAAGGTGACTATATGGAAGGTGCGGAAGGCAACGTGTTTGTGTTACGCAAGA 34164 ||||||| ||||| || |||| |||||||||||| |||||||| | ||| | ||||||| Sbjct 1430 GCAGCCGCGAAGGGGATTATAGGGAAGGTGCGGACGGCAACGTTTATGTACTGCGCAAGA 1371 Query 34165 CTTATCAGAACGAGCAGGCAGCAAGACGCGCAGCGGCGGCAAAGTGGCAGCAGCTACAAC 34224 | || ||||| || |||| |||| |||||| || || |||||||||||||| || || | Sbjct 1370 CCTACCAGAATGAAGAGGCCGCAAAACGCGCCGCCGCCGCAAAGTGGCAGCAACTTCAGC 1311 Query 34225 GCGGAGCCGCATCATTCTCCATCACACTGGCACGTGGACGCGCAGAACTCTACCCCGAAA 34284 | || ||||| | |||||| | || ||||| || || || || || || ||||| || | Sbjct 1310 GGGGCGCCGCGGCGTTCTCCCTGACTCTGGCCCGAGGCCGGGCGGAGCTTTACCCGGAGA 1251 Query 34285 TGCATGGCACGGTAACAGGATTTAAAAGCGAGATTGATAATCAGGACTGGATTATTGCAA 34344 ||| | || | | || || || ||| |||||| ||||||||||||||| || Sbjct 1250 TGC-CGTGACCATCAACGGCTTCAAGGCCGATATTGATCGTCAGGACTGGATTATAGCGC 1192 Query 34345 AAGCCGAGCAC 34355 || |||||| Sbjct 1191 GGGCAGAGCAC 1181 Score = 259 bits (286), Expect = 1e-64 Identities = 348/479 (73%), Gaps = 9/479 (2%) Strand=Plus/Minus Query 27650 CCTTATCTTTGAAGCCGGACAGCATATCGCTGAACGATGAGGATTGCAGGCGCTCCCGCA 27709 ||||||| || | |||||| |||| ||||| || | || | || |||||||| ||| Sbjct 7518 CCTTATCCTTCAGGCCGGAAAGCAGATCGCCGACAGCCGATGCCTGAAGGCGCTCATGCA 7459 Query 27710 AATCCTCATCACAGCGTTCAAGGGTCAGTGAAAATTCTATCTTTTTCGCCTTACCGTAGC 27769 | |||||||| || || | || | | | | ||| || |||||||| ||||| || |||| Sbjct 7458 AGTCCTCATCGCAACGCTGAAAGCTGATGGCAAACTCAATCTTTTTTGCCTTGCCATAGC 7399 Query 27770 GATCAAACTCGGAACGGGTCGTATTCGTTCCGGTCAGGACATACATGCCGTAAATCTGCC 27829 |||||||| | | | |||| | | ||||| || ||||||||||| || ||||| | Sbjct 7398 GATCAAACGCAGTGTGCGTCGCCTGCAACCCGGTGAGCACATACATGCCATATATCTGAC 7339 Query 27830 CGACGCCATCAATCAAAGGCCAGGGTCGTCCTGTATACGCCTGCGTGGTCAG--CAGCGA 27887 | |||| || || |||||||| || || || || || ||||| | ||| |||| | Sbjct 7338 CCGCGCCGCTGATTAACGGCCAGGGGCGCCCGGTGTAGGCTTGCGTCGCCAGTGCAGCAA 7279 Query 27888 CAGCGACACTTCGCCACCTGTAATTTCAGGATAAAGCACACCAGAAAGAACGA--TGCGA 27945 |||| || ||||| || ||||||||||| ||||| || || |||| || |||| Sbjct 7278 --GCGAGACATCGCCCCCCGTAATTTCAGGGTAAAGTACCCCGTCAAGATTGAGCTGCGT 7221 Query 27946 TCATCACCTGCACCGATATACTGCCAGCTTGCTGAACGGTTAACGCGTTCATTTTTCACA 28005 | ||||| ||||| || || ||||| |||| || ||||||| ||| |||||||| || Sbjct 7220 T--TCACCGGCACCAATGTATTGCCATTTTGCCGAGCGGTTAATGCGATCATTTTTGACG 7163 Query 28006 TGCCGCCAGCTTTTGTTTTGCTGTAACTGCTGATGCGGCAGCGTGCGCAGCTCAAAAACA 28065 || |||||| | ||| |||||||||| | |||||||| || ||||| ||| Sbjct 7162 TGTCGCCAGTTCAGCGAGTGCCGTAACTGCTGGTAGGGCAGCGTTTTCAATTCAAAGACA 7103 Query 28066 AACATGCCGTAGATCATCATCATGGCCATGACTCC-TCAATCTTTATCGTAAAAACTGC 28123 ||||||||||| | |||||||||| | || |||| | | ||| | || | |||||||| Sbjct 7102 AACATGCCGTATACCATCATCATGATCCTGCCTCCTTTAGTCTCTGTCTTTAAAACTGC 7044 Score = 163 bits (180), Expect = 7e-36 Identities = 221/307 (72%), Gaps = 6/307 (2%) Strand=Plus/Minus Query 32862 CCACCGATAACCAGTTGATCCTGCGTCTTTCCGTCTTCTTCTTTGTGTTCAGCC---ACG 32918 || || |||| ||| || |||||| |||||| | |||| || | ||| ||| Sbjct 2702 CCGCCCATAATCAGCTGTGACTGCGTTTTTCCGCCATCTT---TGCCGGCCGCCTCGACG 2646 Query 32919 CGAACGACGATCACCTTTGTGCTCACCTGGTCTGCGATGGCCTTAAGCGCACGATAAAGC 32978 || |||||||| || || | ||| ||||||| || |||||||| |||| || || Sbjct 2645 CGCACGACGATAACTTTCGGGCTGGCCTGGTCGGCAATGGCCTTGAGCGTTTTGTACAGG 2586 Query 32979 GTCCCCGTTGTCCCGCATTTTCCCAGCACGTCATTGACGCGGGTCAGCAGTGTGGGCTTG 33038 | || || | ||| || |||||||||| |||||| || ||||||| | ||| || Sbjct 2585 GAGCCGGTCTTGCCGGCCTTGCCCAGCACGTTATTGACCCGCGTCAGCAATACGGGTGTG 2526 Query 33039 TTCAGCGGGAACAGCTTCGCGTCCGCATCATCCGCCGTTGCCACGATACCGATAACGCTG 33098 ||||| || || |||||||| |||||||||||| || || | ||| || || ||| Sbjct 2525 TTCAGGGGAAAGGTGTTCGCGTCGGCATCATCCGCCACGGCGACCACACCAATGACACTG 2466 Query 33099 GAATCAACATCGTTAATCGCTGTTACCAGGTCGGTATTTTCCGTAACACGGGCACCATGA 33158 || |||| ||| || || ||||| ||||| |||||||||||| ||| | |||||||| Sbjct 2465 GATTCAATATCATTGATGGCTGTCACCAGATCGGTATTTTCCCGAACGTGCACACCATGA 2406 Query 33159 AAACGAG 33165 || |||| Sbjct 2405 AAGCGAG 2399 Score = 132 bits (146), Expect = 1e-26 Identities = 205/293 (70%), Gaps = 0/293 (0%) Strand=Plus/Minus Query 28831 GCACCGCCAAGAACGTTACCGAATATCTCGCCAGCACTGGTACATTTATCCAGCGTTTCC 28890 || || || || || || ||||| | || || || | || || |||||||| || ||| Sbjct 6292 GCGCCCCCTAGCACCTTGCCGAACGTTTCACCGGCCCCGGCGCACTTATCCAGTGTGTCC 6233 Query 28891 TTGCTGGACTCCATCGGTGACAGCAGCGATTTAAACCAGTTAAACACCTGGCTGATCCCA 28950 |||||||||||||||| || |||| | || |||| || ||| ||| | | |||||| Sbjct 6232 CTGCTGGACTCCATCGGGGAGAGCAATGCCTTGAACCCGTCAAAAACCCGACCGATCCCC 6173 Query 28951 CTCCCGATTGCGTCAAAAACAGGACCAAACCGTTCAAAGGTTTCGCGCAACGGGGTCAGC 29010 || || || ||||| | |||| || | ||||| ||||| || || | ||| Sbjct 6172 GCGCCTATCGCATCAAATAGCGGACTGAATTGCGTAAAGGCCTCGCGTAAGGGCGCAAGC 6113 Query 29011 CTTTCCATAATCCCGCTGAACACCCCGGCAAAAAATGCCCTGATGGGATCCCAGTATTTC 29070 | |||| || ||| | ||||||||| ||||| ||| |||| || ||||||||||| Sbjct 6112 TTCGCCATGATGCCGTCAAGCACCCCGGCGAAAAAAGCCTTGATAGGCGCCCAGTATTTC 6053 Query 29071 CAGATAAGAACGGCAGCTCCGGCAAGCGCAGCCACGATAAGACCAACCGGACT 29123 |||||||| || |||| | ||| || || | || || ||| |||||| Sbjct 6052 CAGATAAGTACACCAGCGGCCACAAATGCCGCGCCAATCAGGGCAATCGGACT 6000 >seq552 Length=31981 Score = 152 bits (168), Expect = 1e-32 Identities = 273/391 (70%), Gaps = 11/391 (3%) Strand=Plus/Plus Query 26982 GATTGGCTATGTAAGGGTATCAACAAATGACCAGAATACAGACCTGCAACGAAACGCTCT 27041 ||| |||||| | ||||| |||| ||||||||| || || || | || | ||| | || Sbjct 30612 GATAGGCTATATGAGGGTGTCAAAAAATGACCAAAACACCGATTTACAGCAAAAATC-CT 30670 Query 27042 TG-TTTGTGCAGGATGTGAACAAATATTTGAAGATAAATTAAGCGGGACAAAGACAGACC 27100 || |||| ||| |||||||| || ||||| |||||| | ||||| ||| ||||||| Sbjct 30671 TGATTTGCGCAAATTGTGAACAGATTTTTGAGGATAAAATCAGCGG---AAAAACAGACC 30727 Query 27101 ---GACCGGGATTAAAACGCGCTTTAAAGCGCCTTCAAAAAGGTGACACGCTGGTTGTCT 27157 |||| ||||| |||||||| || | || || || ||||| | || |||| Sbjct 30728 AGAGACCCGGATTTAAACGCGCGCTAGATGCACTGAAATCGGGCGACACTTTAGTCGTCT 30787 Query 27158 GGAAACTGGATCGCCTCGGGCGAAGCATGAAACATCTGATTTCTCTCGTCGGGGAACTAC 27217 |||| ||||| | || || || || || |||||| ||||| || | | |||| Sbjct 30788 GGAAGATGGATAGACTGGGTCGCAGTATTAAACATTTGATTACTTTAATATCCAAACTGG 30847 Query 27218 GGGAGCGAGGGATTAATTTTCGCAGTCTGACCGACAGCA-TAGATACATCTTC-TCCAAT 27275 || || ||| |||||| ||| |||| || || | ||||| ||| | ||| | Sbjct 30848 AAGATGAAGATATTTATTTTCATAGTTTGACGGATTCCAATTGATACCTCTACATCCTCT 30907 Query 27276 GGGGCGTTTTTTCTTCCACGTGATGGGTGCCCTGGCTGAAATGGAACGTGAATTAATTGT 27335 || ||||||||||| || |||||| |||| |||| | || || || ||| | ||||| Sbjct 30908 GGC-CGTTTTTTCTTTCATGTGATGAGTGCGTTGGCACAGATAGAGCGAGAACTGATTGT 30966 Query 27336 TGAACGTACACTGGCCGGACTGGCAGCAGCG 27366 ||| ||||| ||| || |||||||| || Sbjct 30967 TGAGCGTACTAAGGCAGGTTTGGCAGCAACG 30997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 114480955485312