Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_027298.1 Length=36814 Score E Sequences producing significant alignments: (Bits) Value seq550 567 2e-157 >seq550 Length=29371 Score = 567 bits (628), Expect = 2e-157 Identities = 911/1302 (70%), Gaps = 28/1302 (2%) Strand=Plus/Minus Query 13373 CCCGGACGGCCAGCACGAAGCCATTGCAGCACCGCGTGGTAATGCCAAGTCCACCCTGGT 13432 |||| | ||| |||| || |||||||| || |||||||| | |||||||| || ||||| Sbjct 17434 CCCGAAAGGCGAGCAGGACGCCATTGCCGCGCCGCGTGGGGAGGCCAAGTCAACGCTGGT 17375 Query 13433 GAGCCAGATATTCGTGATCTGGTGCGTACTCACCGGCCGCAAGCATTACCCCCTGATCAT 13492 |||||| | || ||| | ||||| | | |||| |||||| || | ||| | | Sbjct 17374 CAGCCAGCTGTTTGTGCTGTGGTGTCTGGTGCGCGGCATCAAGCACTATGCGCTGGTAGT 17315 Query 13493 CATGGATGCCTTCGAACAGGCCGCCACGATGTTGGAGGCGATCAAGGCGGAGCTGGAGTT 13552 |||||| || |||| |||||| | ||||| | || || |||||||| |||||||| || Sbjct 17314 GATGGATTCCATCGACCAGGCCTACCCGATGCTCGAAGCCATCAAGGCCGAGCTGGAATT 17255 Query 13553 CAACCCGCGCCTGGCCATGGACTTCCCCCAGGGCGCCGGCAAGGGCCGCGTCTGGCAAGT 13612 ||||| || ||| ||||||||| | | | ||| |||||||||||||| | Sbjct 17254 TAACCCCCGGCTGCTGGCTGACTTCCCCGAAGCCTGCGGGGTAGGCCGCGTCTGGCAGAT 17195 Query 13613 CGGCACCATCGTTACGGCGAACGATGC-CAAGGTCCAGGTCTTCGGCTCCGGCAAGCGGA 13671 ||||||||| | ||| |||||| |||||| ||||| ||| ||| || | Sbjct 17194 GGGCACCATCCTGACGCGCAACGATATGCAAGGTGCAGGTGGCCGGTAGCGGTAAAAAGC 17135 Query 13672 TGCGCGGTCTTCGACACGGCCCGCATCGTCCTGACCTGGTGATCGGCGACGACCTGGAGA 13731 ||||||| || || ||||| ||| | || |||||||||||||| ||||| | |||| Sbjct 17134 TGCGCGGCCTGCGCCACGGGCCGTACCGCCCTGACCTGGTGATACTGGACGATATTGAGA 17075 Query 13732 ACGACGAGAACGTCCGCAGCCCGGAGCAGCGCGACAAGCTGGAAAACTGGCTGAAGAAGA 13791 |||||||| | || |||| |||||| ||||||||||| ||||||| |||||||| || | Sbjct 17074 ACGACGAGCAGGTGCGCAACCCGGACCAGCGCGACAAACTGGAAAGCTGGCTGAGAAAAA 17015 Query 13792 CCGTTCTGTCCCTCGGCTCGGCCGACGACACCATGGACGTGATCATCATCGGCACCATCC 13851 |||| ||| | || ||| || | || | | || ||| || ||||||||||||| Sbjct 17014 CCGTGCTGCCGCTGGGCGGTGCGGGCGCAAAACTCGATGTGGTCTATATCGGCACCATCC 16955 Query 13852 TTCACTACGACTCGGTCCTGTCGCGCCTGCTGAAAAACCCACTGTGGAAGCGGCGCAAGT 13911 | || |||||||||||| | || ||| ||||| |||||| ||||| | | ||| | Sbjct 16954 TGCATTACGACTCGGTCTTATCACGCACCCTGAATAACCCATTGTGGCGACAG-GCACGG 16896 Query 13912 -TCAAGGCGATCATCGAATGGCCGCACCGCATGGACCTGTGGGAGACGTGGGAAGAGCTT 13970 | ||||| | | | |||||| | || ||||||||||| ||||| ||| Sbjct 16895 CTTAAGGCCCTGCGCCAGTGGCCGGTGAACCTGTCGCTGTGGGAGACCTGGGAGCAGCGC 16836 Query 13971 CTGCTCAACTCGGACGACGAAGGGGCCGCCGCCCTGGAGTTCTACCAGGAGCNNNNNNNN 14030 ||| ||| || || || | ||| || | | | || ||| || | Sbjct 16835 TTGCGTAACGAGGGGGAGGACGCGGC-GCAGGCATT---TTACACCCGG--CACCGCGTG 16782 Query 14031 NNNNNNNNNGACGGCGCGATCATCTGCTGGCCGGATGGGCAGCCCCTCTACAAGCTCATG 14090 || |||||| ||| |||| | | | | || || | || ||| Sbjct 16781 GAAATGGAAGATGGCGCGGAGGTCTCCTGGTCCGCCCGCCCGCTGCTGACC---CTGATG 16725 Query 14091 GTGAAACGTGCCCGCGATGGGCACTCGGCGTTCGACTCGGAACAGCAGAACGACCCAGTC 14150 | || ||||| || || ||| | | || || | || | ||||| ||||| ||| Sbjct 16724 CATATCCGCGCCCGTGACGGTCACGCCACCTTTGATGCCGAGTACCAGAATGACCCGGTC 16665 Query 14151 CAGGGCGAGAACGCCCCGTTCGCC----GCCTGCATCACGTTCTGGGTCAACCGCCTGGC 14206 || || | || | ||| ||| |||||||| |||||||||||||| || Sbjct 16664 AGCGGTGAAGATGCGCTGTTTGCCCACTGCCTGCAT----TTCTGGGTCAACCGGCTTAA 16609 Query 14207 GCAGTGGATGTTCTACGGCGCGTGTGACCCGTCCCTTGGCAAGCAAGGTTCCAGCCGCGA 14266 ||||| | ||||| || || || ||||| ||| |||||| || ||||||| || Sbjct 16608 CGAGTGGGTCTTCTATGGGGCCTGCGACCCCAGCCTCGGCAAGGCCGGGGCCAGCCGTGA 16549 Query 14267 CCC--CAGCGCCATCCTGGTGGGTGGGTTCAATCGGGAAACAGGCGTCCTGGACGTGGTC 14324 ||| |||||| | ||||| ||||| || ||||| | || ||||| ||||| ||||| Sbjct 16548 CCCGTCAGCGC--TGCTGGTCGGTGGCTTTAATCGCGCCACCGGCGTGCTGGATGTGGTG 16491 Query 14325 GAGGCCGGTATCCGCAAGCGCCTGCCGGACAAGATCATCGAGGACATCATCGCCATGCAG 14384 || || || |||||||| ||||||||| || ||| | || || || |||| Sbjct 16490 GAAGCGCAGATACGCAAGCGGCTGCCGGACGCCATTATCAGCAATATTATTGCTCTGCAA 16431 Query 14385 CGGGCCTATCGCTGCCTGGTCTGGGGCGTTGAGGCGGTCCAGTTCCAGGAGTTCCTGCGC 14444 || |||| |||||||||||||||| |||||||||| ||||| ||||||||||||||| Sbjct 16430 AAGGAATATCACTGCCTGGTCTGGGGCATTGAGGCGGTGCAGTTTCAGGAGTTCCTGCGC 16371 Query 14445 ACCGAGCTGGTGAAGCGCTCGGCCAAGGCGGGCTGCCCAGTACCTGCCCGAGCGATCACC 14504 ||||||||| | |||||| |||| || |||| ||| || || || || || || | | Sbjct 16370 ACCGAGCTGATTAAGCGCGCGGCTCAGCTGGGCCACCCGGTGCCGGCGCGGGCCATTATC 16311 Query 14505 CCGCACGCCGACAAGCTGCTGCGCATCGAAAGTCTCCAGCCGCACATGGCCAACGGCCTA 14564 || || |||||||||||| |||| ||||| | || ||||| || |||| ||||| || Sbjct 16310 CCCCATGCCGACAAGCTGTTGCGTATCGAGACCCTGCAGCCCCATATGGAAAACGGGCTT 16251 Query 14565 ATCCGTCTGCATCCAAGCCAGACCGTCCTGGAACAACAGCTGCGCCA--CTTCCCGGCCG 14622 ||||| ||||| | ||||||||| |||| ||| ||||||||||| |||||| || Sbjct 16250 ATCCGGCTGCACGCCAGCCAGACCACCCTGATACAGCAGCTGCGCCATTTTTCCCG--CG 16193 Query 14623 CAGACCACGACGATGGCCCCGACGCCCTGCACATGCTCTGGA 14664 | ||||| ||||| ||||| ||||| ||||| |||||||||| Sbjct 16192 CCGACCATGACGACGGCCCGGACGCGCTGCATATGCTCTGGA 16151 Score = 143 bits (158), Expect = 6e-30 Identities = 170/227 (75%), Gaps = 4/227 (2%) Strand=Plus/Minus Query 16722 CCGGCTGGAAACCATCTATCAGACCAACATGCAGTCGGCCTACATGGCCGGGCGCTATGC 16781 ||||||||| || || | || ||||| | ||||| ||||| ||||||||||||||| | Sbjct 14245 CCGGCTGGAGACGATTTTTCGCACCAATACCCAGTCTGCCTATATGGCCGGGCGCTAT-C 14187 Query 16782 CGCCGCATACGAGGCCAGGGAAACCCAC--CCCTACTGGATGTATGTGGCCGTCATGGAC 16839 || || | || | | | ||| | ||||||||| ||||||||| || |||||| Sbjct 14186 AGCGGC-TGCGCGAGAACGTCGACCAGCGGCCCTACTGGCAGTATGTGGCGGTGATGGAC 14128 Query 16840 AGCGTCACCCGGCCCAGCCATGCGGCGCTACATGGCAAGGTGTACCGCTGGGACGACCCG 16899 ||| |||||| ||||||||||| ||||| |||||| ||||| ||| | ||||| || Sbjct 14127 AGCCACACCCGCCCCAGCCATGCCGCGCTGCATGGCCGGGTGTTCCGTTATGACGATGCG 14068 Query 16900 ATCTGGCAGCACATCATGCCGCCGAATGGCTACAACTGCCGCTGCCG 16946 |||| | | | | || ||||| |||||||||||||||||||| Sbjct 14067 GGCTGGGATACCCTGTTTCCCCCGAACGGCTACAACTGCCGCTGCCG 14021 Score = 87.8 bits (96), Expect = 4e-13 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 14938 CATCTTGATCGAGGCCGAGCAGGGTCAACTCCAGGCTCAGGCCGAGCTGTTCATGGACAT 14997 |||| ||| ||||||||||||||| || || | ||||| || ||||| | || || Sbjct 15912 CATCCTGAGCGAGGCCGAGCAGGGGCACCTGGTGCGCCAGGCTGACCTGTTTTTTGATAT 15853 Query 14998 GGAGGAACGCGACGCCCACCTGTTCGCCGAAATGAGCAAGCGC 15040 |||||| ||||||| ||| || || ||||| |||||||||||| Sbjct 15852 GGAGGAGCGCGACGGCCATCTTTTTGCCGAGATGAGCAAGCGC 15810 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117680892747312