Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_027339.1 Length=38389 Score E Sequences producing significant alignments: (Bits) Value seq439 248 2e-61 seq595 150 4e-32 seq731 113 1e-20 >seq439 Length=76666 Score = 248 bits (274), Expect = 2e-61 Identities = 413/597 (69%), Gaps = 0/597 (0%) Strand=Plus/Minus Query 24429 CCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAA 24488 ||| ||||| ||||| ||| |||| |||||| | ||| |||||| |||| || || Sbjct 70427 CCACTGCTCGCCAAAGGTAAAGCCAAGTTCAGCTAACGCCATATCCATTCTTTCTATAAA 70368 Query 24489 CTCCGGCACCATCTCGTCAAAACTCGCCATGTAATTTTCATCCCGCTCAACCACGACATA 24548 ||| || || ||| ||||| | | ||||| || || || || |||| | ||| | Sbjct 70367 CTCTGGTACGGACTCTTCAAATTTTGAAATGTATTTATCGTCTCGTTCAATAATGACGTT 70308 Query 24549 ATGCAGGCCTTCACGCTTCATTCGTGGGTCATAGTTGGCAAAGTACCAGGCATCTTTTCG 24608 || || |||||||| |||||||| ||||||||||| ||||| | ||| || ||||| | Sbjct 70307 GTGAAGTCCTTCACGTTTCATTCGAGGGTCATAGTTAGCAAAATGCCATGCGTCTTTCCC 70248 Query 24609 CGTTACCCACATGCTGTACTGCACCTGGGCCATGTAAGCCGACTTTATGGCCTCGAAACC 24668 ||| ||||||||||| |||| ||||| ||||| || |||| || ||| | || || || Sbjct 70247 CGTAACCCACATGCTAAACTGGACCTGAGCCATATATTCCGATTTGATGCCGTCAAAGCC 70188 Query 24669 ACCGAGCCGGAATTTCATGAAATCCCGGGAGGTAAACGGGCATTTCAGTTCAAGGCCGTT 24728 | || | || || || || || || || ||||| || || || | |||||| || Sbjct 70187 ATTCAGTCTAAAATTAATAAAGTCGCGTGATGTAAATGGACACTTTAATTCAAGTCCCAG 70128 Query 24729 GCCGTCACTGCATAAACCATCGGGAGAGCAGGCGGTGCGCATATTTTCGTCGCGATAGAT 24788 || ||||| || |||||||| ||||| || ||||||| ||||| | || Sbjct 70127 CCCATCACTACAGTCGCCATCGGGGGAGCACGCTACACGCATATCGTCGTCCTTGAATAT 70068 Query 24789 GATCGGGGATTCAGTAACATTCACGCCGGAAGTGAATTCAAACAGGGTTCTGGCGTCGTT 24848 ||| ||| || |||| | | || | |||||| |||||||| ||| || | | Sbjct 70067 GATGGGGACGTCGATAACGGTTAACCCTGTAGTGAACTCAAACAGTCGTCTTGCTACCTC 70008 Query 24849 CTCGTACTGTTTTCCCCAGGCCAGCGCCTTAGCATTAACTTCCGGAGCCACACCGGTGCA 24908 |||| | ||||||||| | |||| | | || || ||||| |||| ||||| || Sbjct 70007 TTCGTTTTCTTTTCCCCATTCTAGCGGCCTTGCCTTCACTTCGGGAGATTGCCCGGTACA 69948 Query 24909 AACCTCAGCCAGCAGGGTGTGGAAGTAGGACATTTTCATGTCAGGCCACTTCTTTCCTGA 24968 || ||| || | ||| ||| |||||| ||| ||| | || | ||| || || ||||| Sbjct 69947 AATCTCGGCAATCAGCTTGTTGAAGTAAGACCGCTTCGTATCCGTCCATTTGTTGCCTGA 69888 Query 24969 GCGGGGCTTTGCTATCACGTTGTGAACTTCTGAAGCGGTGATGACGCCGAGCCGTAA 25025 || || | | |||||| | | | ||||| ||||| ||| |||| || || || Sbjct 69887 ACGTGGGCTGGAAATCACGCAGGAAGCCTCTGAGGCGGTTATGGCGCCAAGGCGCAA 69831 >seq595 Length=6865 Score = 150 bits (166), Expect = 4e-32 Identities = 323/481 (67%), Gaps = 4/481 (1%) Strand=Plus/Minus Query 8440 TTTGATTATATCGGCCTGCCGTTCAACGACACGGCCTCC--GTTAACACGCTGGTGACCG 8497 ||||||| |||||| || || ||| ||| || | ||| || || | | | | || Sbjct 6619 TTTGATTTTATCGGACTCCCCTTCGGCGATACTGACTCTTTGTAAAAAATCAGCGG--CG 6562 Query 8498 AGATGAACGATACCAGCGGTCGCTGGAGCTATGCGCGTCAGCTGTATGGTCATGTGTACA 8557 ||||||| ||||||||||| ||||||| | || || |||| || ||||| |||| Sbjct 6561 AGATGAATGATACCAGCGGGCGCTGGAATCCTTATCGGCAATTGTACGGGCATGTCTACA 6502 Query 8558 CGGCAAAGATCGGCACGCTGTCAGAACTGGTGACCGCAGGTGACCAGTTTAACCAGCAGC 8617 ||||||| | |||||| | | ||||| | || |||| |||||| | | | Sbjct 6501 CGGCAAAAACAGGCACGGTCGCTGAACTTATCGCCTTTGGTGCGGCGTTTAATGATCCAC 6442 Query 8618 ACATTACCCTGGCGGGATACGAAAAAGAGACCCAGACGCCTGCCGACGAGCTGGCGGCAA 8677 || | || | ||||||||||||| | |||||| | || ||||||| || Sbjct 6441 ACCTCACTATCGCGGGATACGAAACCACTATCCAGACCGCATTAGATGAGCTGGTTGCGG 6382 Query 8678 GCCGTACCGCCCGCGCAGCGGTGTTTATTCGCAACGATCCGGCACGTCCCACGCAGACCG 8737 || || || ||| ||||| | ||||||||||||||| | || || || | || Sbjct 6381 CTCGGCTGGCGCGAAGTGCGATGTTTTTGCGCAACGATCCGGCAAGGCCAACACACAGCG 6322 Query 8738 GTGAGCTGGTGGGTATGCTGCCTGCGCCGAAGGGGAAACGGTTCACGATGACCGAACAAC 8797 | ||| | || | | || || ||| ||| |||| ||||| |||| || || | Sbjct 6321 GCGAGTTAAACGGCGTATTACCCGCCCCGGCGGGTCAACGCTTCACCTTGACGGAGCAGC 6262 Query 8798 AGACCCTGCTGTCTCATGGCGTGGCAACGGCGTATGTCGAAAGCGGGGTGCTGCGCATTC 8857 | | || || | || ||| | || || || |||| ||| | || | |||| |||| Sbjct 6261 AATCGCTCCTTTTTCGTGGTATCGCCACAGCCAATGTAGAAGGTGGCGCATTGCGTATTC 6202 Query 8858 AGCGTGATGTCACCACGTACAGGAAAAACGCTTACGGTGTTGCGGATAACAGCTACCTCG 8917 | ||||| ||||| || |||| ||||||| |||||| ||||| ||||| ||||| || | Sbjct 6201 AACGTGACGTCACAACCTACAAGAAAAACAGTTACGGGGTTGCCGATAATAGCTATCTGG 6142 Query 8918 A 8918 | Sbjct 6141 A 6141 Score = 100 bits (110), Expect = 7e-17 Identities = 260/393 (66%), Gaps = 4/393 (1%) Strand=Plus/Minus Query 13112 CGCACGCCGGATGAGGTTTTACCCGCGCTGGTGCTGGCGGCGACCTTGTTTGATAACGCG 13171 || ||||| || | ||| ||||||| ||||| ||||| || | | || ||| || ||| Sbjct 3466 CGTACGCCAGAGGCGGTGCTACCCGCACTGGTTCTGGCCGCCAAGTGGTATGACAATGCG 3407 Query 13172 GCGCGTGACGCGGACATTATCCGGCGTAATGCCATTACGCATCCCGGCTTTGTGCCGGTG 13231 || || || | || || | | | || |||||| ||| ||||| |||||| |||| || Sbjct 3406 GCACGGGAAACCGATATCACCAGCCGGAATGCCGTTAATCATCCTGGCTTTATGCCAGTT 3347 Query 13232 ATCCCTCTGAAGGTGCCAGTGCAATGAACGACAATGTCACGCTACGGGTAAATGGCCGGG 13291 | ||| ||| || || | |||| | | || | | || || || || || | Sbjct 3346 AAACCTTTGAGAGTACCCGCAAGATGAGTAATCACGTGATATTGCGCGTCAACGGGCGCG 3287 Query 13292 AGTGGAATGGCTGGACATCGGTGCGCATCGGTGCCGGTGTTGAACGACTGGCGCGGGATT 13351 | ||| ||||||||| ||| | || || || | || ||||| | || |||| Sbjct 3286 AATGGGGGGGCTGGACACGGGTACAGATTTCAGCAGGCATAGAGCGACTCTCACGCGATT 3227 Query 13352 TCAGTGTGGAGATCACCCGCCAGTGGCCGGGAG-ATGAGG-GTATTACCACGCTTCAGTC 13409 ||| ||| || ||||||||||| |||| || | || ||| | ||| || | ||| | Sbjct 3226 TCAATGTAGAAATCACCCGCCAATGGCTTGGTGAATCAGGAAGAGTAC--CGTTACAGCC 3169 Query 13410 GCGCATTAAAAACGGTTCAAAAGTGGAGGTGCTGATTGGTGATGAGCTGGTGATCACCGG 13469 | |||||||| ||| | || || || || || ||| | || || | ||||| Sbjct 3168 CAGAATTAAAAAAGGTGAACTTGTCGAAGTCCTCATCGGTCAGGATAAAGTCCTAACCGG 3109 Query 13470 CTGGGTGGAGGCGACGCCCGTTCGTTACGATGC 13502 |||| | || || || || | ||||| ||||| Sbjct 3108 CTGGATTGAAGCCACACCGATACGTTATGATGC 3076 Score = 95.1 bits (104), Expect = 3e-15 Identities = 90/115 (78%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 14045 TTGAAGCCAGACAACGGGCGGCGCGGACGGATGAAACCACCTACGTGGTGCAGGGCTGGC 14104 ||||||| ||||||||| || | || || ||||||||||| || |||||||||| Sbjct 2400 TTGAAGCACAACAACGGGCCGCCAGAACCGAAGAAACCACCTATACCGTACAGGGCTGGC 2341 Query 14105 GACAGGGTAACGGTACGCTGTGGCAGCCCAACCAGCGGGTGATTGTCTTTGATCC 14159 | || ||| |||| | |||||| | || |||||||| |||||||||||||| || Sbjct 2340 GGCAAGGTGACGGCAGTCTGTGGAAACCTAACCAGCGCGTGATTGTCTTTGACCC 2286 Score = 84.2 bits (92), Expect = 5e-12 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 14947 CCGCGCCGTGGTGATTTCCCTGTTTACCTGGCGGCGGGCGGAGCCTGATGACAACGCCGA 15006 ||| |||||| | || || || || |||||||| || || ||||| ||||| || |||| Sbjct 1436 CCGTGCCGTGATTATCTCGCTATTCACCTGGCGACGTGCTGAGCCGGATGATGACACCGA 1377 Query 15007 CGTCCCGATGGGATGGTGGGGGGATACCTGGCCTGCGGTACAGAATGACCG 15057 ||| | ||||||||||| ||||||||||| | ||||| || ||||| Sbjct 1376 TACGCCGTTCGGATGGTGGGGTGATACCTGGCCGACCGTACAAAACGACCG 1326 >seq731 Length=3676 Score = 113 bits (124), Expect = 1e-20 Identities = 152/211 (72%), Gaps = 8/211 (4%) Strand=Plus/Minus Query 6538 GGCAACAATGACGACTTCCTTTTTGCACGTTGATTTTCAGCAGCCCGCGGAGATGCGCTT 6597 |||| ||||| ||||| ||| ||| ||||||||||||||||| || | ||| || || Sbjct 1303 GGCAGCAATGGCGACTCCCTATTTACACGTTGATTTTCAGCAACCGGATGAGTTGGTTTT 1244 Query 6598 TAACCGCGCCCGTGTCCGGCGGGCGTTTGTCACGATTGGTCAGCGTCATATGCGTGATGC 6657 |||||||| | | || ||||||||||| ||||| || ||| |||||||| ||||| Sbjct 1243 CAACCGCGCGAGGTTGCGACGGGCGTTTGTGACGATCGGCCAGGTGCATATGCGCGATGC 1184 Query 6658 CCGTCGGCTGGTGATGCGCCGTGCGCGG----TCGGCACCGGGTGAAAACCCCGGTTATC 6713 || || |||||||| |||||| | ||| ||| || ||||| | || | Sbjct 1183 ACGACGCTTGGTGATG----AAGCGCGGTAAATTAGCAGGGGGAGATAACCCGGCATACC 1128 Query 6714 AGACCGGACGCCTGGCTCGTTCGATTGGTTA 6744 | ||||| ||||||| || |||||||| Sbjct 1127 ACACCGGGAAATTGGCTCGCTCCATTGGTTA 1097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 122720793934962