Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_027382.1 Length=37146 Score E Sequences producing significant alignments: (Bits) Value seq552 140 8e-29 seq742 105 2e-18 >seq552 Length=31981 Score = 140 bits (154), Expect = 8e-29 Identities = 264/380 (69%), Gaps = 15/380 (4%) Strand=Plus/Plus Query 35526 GATTGGCTATGTAAGGGTATCAACAAATGACCAGAATACAGACCTGCAACGAAACGCTCT 35585 ||| |||||| | ||||| |||| ||||||||| || || || | || | ||| | || Sbjct 30612 GATAGGCTATATGAGGGTGTCAAAAAATGACCAAAACACCGATTTACAGCAAAAATC-CT 30670 Query 35586 TG-TTTGTGCAGGATGTGAACAAATATTTGAAGATAAATTAAGCGGAACAAGGACAGAC- 35643 || |||| ||| |||||||| || ||||| |||||| | ||||||| || ||||| Sbjct 30671 TGATTTGCGCAAATTGTGAACAGATTTTTGAGGATAAAATCAGCGGAAAAA---CAGACC 30727 Query 35644 --AGACCTGGATTAAAACGCGCTTTAAAGCGTCTTCAAAAAGGTGACACACTGGTTGTCT 35701 ||||| ||||| |||||||| || | || || || ||||| | || |||| Sbjct 30728 AGAGACCCGGATTTAAACGCGCGCTAGATGCACTGAAATCGGGCGACACTTTAGTCGTCT 30787 Query 35702 GGAAACTGGATCGCCTCGGGCGAAGCATGAAACATTTGATTTCTCTCGTAGGGGAATTAC 35761 |||| ||||| | || || || || || |||||||||||| || | || || | Sbjct 30788 GGAAGATGGATAGACTGGGTCGCAGTATTAAACATTTGATTACTTTAATATCCAAACTGG 30847 Query 35762 GAGAGCGAGGGATTAATTTTCGCAGTCTTACTGA---CAGTATTGATACGTC-ATCTCCA 35817 ||| || ||| |||||| ||| | || || || |||||||| || | ||| Sbjct 30848 AAGATGAAGATATTTATTTTCATAGTTTGACGGATTCCA--ATTGATACCTCTACATCCT 30905 Query 35818 ATGGGGCGTTTTTTCTTCCACGTTATGGGTGCCCTGGCTGAGATGGAACGAGAACTAATC 35877 | || ||||||||||| || || ||| |||| |||| |||| || |||||||| || Sbjct 30906 CT-GGCCGTTTTTTCTTTCATGTGATGAGTGCGTTGGCACAGATAGAGCGAGAACTGATT 30964 Query 35878 ATCGAGAGAACGATGGCTGG 35897 | ||| | || | ||| || Sbjct 30965 GTTGAGCGTACTAAGGCAGG 30984 >seq742 Length=3411 Score = 105 bits (116), Expect = 2e-18 Identities = 138/190 (73%), Gaps = 6/190 (3%) Strand=Plus/Minus Query 36395 CCAGATTGTTGGCTATGGTTCAAAGGAGCTGCGCGTTGAAACCATATCCTGCTGGCTGGC 36454 |||||||||||| || || | | | || |||| || |||||||| ||||||||||||| Sbjct 200 CCAGATTGTTGGATACGGCTTACACGAATTGCGGGTAGAAACCATTGCCTGCTGGCTGGC 141 Query 36455 CCGCACAATTATTCAGACAAA---GCACTATTCCCGCCGTTTTGTGAATAACTCTTACCT 36511 |||| ||| | |||| ||| ||| ||| || ||||| ||||| || | || Sbjct 140 CCGCGTCATTGTA---ACAAGTCGGCATTATAGCCGGCGGTTTGTTAATAATTCCTGGCT 84 Query 36512 CCACCTGGGAGTATTCAGCGGACGCGATCTGGTTGGCGTTCTCCAGTGGGGATATGCCCT 36571 || || || |||||| ||| | | | |||||||||| | ||||||||||| ||||| Sbjct 83 ACATCTTGGGGTATTCTCCGGTAGGGCTTTGGTTGGCGTGATGCAGTGGGGATACGCCCT 24 Query 36572 TAACCCCAAC 36581 || || ||| Sbjct 23 GAATCCTAAC 14 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 118743271918296