Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_027384.1 Length=37359 Score E Sequences producing significant alignments: (Bits) Value seq550 315 2e-81 >seq550 Length=29371 Score = 315 bits (348), Expect = 2e-81 Identities = 418/576 (73%), Gaps = 16/576 (3%) Strand=Plus/Minus Query 14651 CGTGCCCGCGATGGGCACTCGGCGTTCGACTCGGAACAGCAGAACGACCCTGTCCAGGGC 14710 || ||||| || || ||| | | || || | || | ||||| ||||| ||| || Sbjct 16718 CGCGCCCGTGACGGTCACGCCACCTTTGATGCCGAGTACCAGAATGACCCGGTCAGCGGT 16659 Query 14711 GAAAACGCCCCCTTCGCC----GCCTGCATCACGTTCTGGGTCAACCGCCTGGCGCAATG 14766 ||| | || | || ||| |||||||| |||||||||||||| || | || Sbjct 16658 GAAGATGCGCTGTTTGCCCACTGCCTGCAT----TTCTGGGTCAACCGGCTTAACGAGTG 16603 Query 14767 GATGTTCTACGGCGCGTGTGACCCGTCCCTTGGCAGGCAAGGTACCAGACGCGACCC--C 14824 | | ||||| || || || ||||| ||| |||| | || |||| || ||||| | Sbjct 16602 GGTCTTCTATGGGGCCTGCGACCCCAGCCTCGGCAAGGCCGGGGCCAGCCGTGACCCGTC 16543 Query 14825 AGCGCCATCCTGGTGGGTGGGTTCAATCGGGAAACAGGTGTCCTGGACGTGGTCGAGGCC 14884 ||||| | ||||| ||||| || ||||| | || || || ||||| ||||| || || Sbjct 16542 AGCGC--TGCTGGTCGGTGGCTTTAATCGCGCCACCGGCGTGCTGGATGTGGTGGAAGCG 16485 Query 14885 GGTATCCGCAAGCGCCTGCCGGACAAGATCATCGAGGACATCATCACCATGCAGCGGGCC 14944 || |||||||| ||||||||| || ||| | || || | |||| || Sbjct 16484 CAGATACGCAAGCGGCTGCCGGACGCCATTATCAGCAATATTATTGCTCTGCAAAAGGAA 16425 Query 14945 TATCGCTGCCTGGTCTGGGGCGTTGAGGCGGTCCAGTTCCAGGAGTTCCTGCGCACCGAG 15004 |||| |||||||||||||||| |||||||||| ||||| ||||||||||||||||||||| Sbjct 16424 TATCACTGCCTGGTCTGGGGCATTGAGGCGGTGCAGTTTCAGGAGTTCCTGCGCACCGAG 16365 Query 15005 CTGGTGAAGCGCTCGGCCAAGGCAGGCTGCCCAGTACCTGCCCGAGCGATCACCCCGCAC 15064 ||| | |||||| |||| || ||| ||| || || || || || || | ||| || Sbjct 16364 CTGATTAAGCGCGCGGCTCAGCTGGGCCACCCGGTGCCGGCGCGGGCCATTATCCCCCAT 16305 Query 15065 GCCGACAAGCTGCTGCGCATCGAAAGTCTCCAGCCGCACATGGCCAACGGCCTAATCCGT 15124 |||||||||||| |||| ||||| | || ||||| || |||| ||||| || ||||| Sbjct 16304 GCCGACAAGCTGTTGCGTATCGAGACCCTGCAGCCCCATATGGAAAACGGGCTTATCCGG 16245 Query 15125 CTGCATCCAAGCCAGACCGTCCTGGAACAACAGCTGCGCCA--CTTCCCGGCCGCAGACC 15182 ||||| | ||||||||| |||| ||| ||||||||||| |||||| ||| |||| Sbjct 16244 CTGCACGCCAGCCAGACCACCCTGATACAGCAGCTGCGCCATTTTTCCCG--CGCCGACC 16187 Query 15183 ACGACGATGGCCCCGACGCCCTGCACATGCTCTGGA 15218 | ||||| ||||| ||||| ||||| |||||||||| Sbjct 16186 ATGACGACGGCCCGGACGCGCTGCATATGCTCTGGA 16151 Score = 289 bits (320), Expect = 7e-74 Identities = 381/527 (72%), Gaps = 1/527 (0%) Strand=Plus/Minus Query 13927 CCCGGACGGCCAGCACGAAGCCATTGCGGCACCGCGTGGTAATGCCAAGTCCACCCTAGT 13986 |||| | ||| |||| || |||||||| || |||||||| | |||||||| || || || Sbjct 17434 CCCGAAAGGCGAGCAGGACGCCATTGCCGCGCCGCGTGGGGAGGCCAAGTCAACGCTGGT 17375 Query 13987 GAGCCAAATATTCGTGATCTGGTGCGTACTCACCGGCCGCAAGCATTACCCCCTGATCAT 14046 ||||| | || ||| | ||||| | | |||| |||||| || | ||| | | Sbjct 17374 CAGCCAGCTGTTTGTGCTGTGGTGTCTGGTGCGCGGCATCAAGCACTATGCGCTGGTAGT 17315 Query 14047 CATGGATGCCTTCGAACAGGCCGCCACGATGTTGGAGGCGATCAAGGCGGAGCTGGAGTT 14106 |||||| || |||| |||||| | ||||| | || || |||||||| |||||||| || Sbjct 17314 GATGGATTCCATCGACCAGGCCTACCCGATGCTCGAAGCCATCAAGGCCGAGCTGGAATT 17255 Query 14107 CAATCCGCGCCTGGCCATGGACTTCCCCCAGGGCGCCGGCAAGGGCCGCGTCTGGCAAGT 14166 || || || ||| ||||||||| | | | ||| |||||||||||||| | Sbjct 17254 TAACCCCCGGCTGCTGGCTGACTTCCCCGAAGCCTGCGGGGTAGGCCGCGTCTGGCAGAT 17195 Query 14167 CGGCACCATCGTTACGGCGAACGAT-GCCAAGGTCCAGGTCTTCGGCTCCGGCAAGCGGA 14225 ||||||||| | ||| |||||| |||||| ||||| ||| ||| || | Sbjct 17194 GGGCACCATCCTGACGCGCAACGATATGCAAGGTGCAGGTGGCCGGTAGCGGTAAAAAGC 17135 Query 14226 TGCGCGGCCTTCGACACGGCCCGCACCGTCCTGACCTGGTGGTCGGCGACGACCTGGAGA 14285 |||||||||| || ||||| ||| |||| |||||||||||| | ||||| | |||| Sbjct 17134 TGCGCGGCCTGCGCCACGGGCCGTACCGCCCTGACCTGGTGATACTGGACGATATTGAGA 17075 Query 14286 ACGACGAGAACGTCCGCAGCCCGGAGCAGCGCGACAAGCTGGAAAACTGGCTGAAGAAGA 14345 |||||||| | || |||| |||||| ||||||||||| ||||||| |||||||| || | Sbjct 17074 ACGACGAGCAGGTGCGCAACCCGGACCAGCGCGACAAACTGGAAAGCTGGCTGAGAAAAA 17015 Query 14346 CCGTTCTGTCCCTCGGCTCGGCCGACGACACCATGGACGTCATCATCATCGGCACCATCC 14405 |||| ||| | || ||| || | || | | || || || ||||||||||||| Sbjct 17014 CCGTGCTGCCGCTGGGCGGTGCGGGCGCAAAACTCGATGTGGTCTATATCGGCACCATCC 16955 Query 14406 TTCACTACGACTCGGTCCTGTCGCGCCTGCTGAAAAACCCGCTGTGG 14452 | || |||||||||||| | || ||| ||||| ||||| ||||| Sbjct 16954 TGCATTACGACTCGGTCTTATCACGCACCCTGAATAACCCATTGTGG 16908 Score = 134 bits (148), Expect = 3e-27 Identities = 167/227 (74%), Gaps = 4/227 (2%) Strand=Plus/Minus Query 17276 CCGGCTGGAAACCATCTATCAGACCAACATGCAGTCGGCCTACATGGCTGGGCGCTAT-- 17333 ||||||||| || || | || ||||| | ||||| ||||| ||||| ||||||||| Sbjct 14245 CCGGCTGGAGACGATTTTTCGCACCAATACCCAGTCTGCCTATATGGCCGGGCGCTATCA 14186 Query 17334 GCCGCCGCATACGAGGCCAGGGAAACTCATCCTTACTGGATGTATGTGGCCGTCATGGAC 17393 || || || |||| | || | || |||||| ||||||||| || |||||| Sbjct 14185 GCGGCTGCG--CGAGAACGTCGACCAGCGGCCCTACTGGCAGTATGTGGCGGTGATGGAC 14128 Query 17394 AGCGTCACCCGGCCCAGCCATGCGGCGCTACATGGCAAGGTGTACCGCTGGGACGACCCG 17453 ||| |||||| ||||||||||| ||||| |||||| ||||| ||| | ||||| || Sbjct 14127 AGCCACACCCGCCCCAGCCATGCCGCGCTGCATGGCCGGGTGTTCCGTTATGACGATGCG 14068 Query 17454 ATCTGGCAGCACATCATGCCGCCGAATGGCTACAACTGCCGCTGCCG 17500 |||| | | | | || ||||| |||||||||||||||||||| Sbjct 14067 GGCTGGGATACCCTGTTTCCCCCGAACGGCTACAACTGCCGCTGCCG 14021 Score = 82.4 bits (90), Expect = 2e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 21213 AACGAGGACTTCGAGGCCACCGTCGAGGTGGACCGCAACGACATCGAGGACGACCAGCTC 21272 || || |||| |||||||| || || || ||||||||||||||| |||| |||||||| Sbjct 10446 AATGATGACTATGAGGCCACGGTGGAAGTAGACCGCAACGACATCCAGGATGACCAGCTG 10387 Query 21273 GGCATCTACTCGCCTCAGGCGCAGATGGCCGGTTTCTCGGCGGCGCAGCTCCCGGACGAA 21332 || | ||| ||||||||||||| || || || | || |||| |||||||| Sbjct 10386 GGGGTTTACCAGCCTCAGGCGCAGGATGCGGGCTTTGCCGCCAAGCAGTGGCCGGACGAG 10327 Query 21333 CTGGT 21337 |||| Sbjct 10326 ATGGT 10322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 119424858555102