Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_027398.1 Length=38742 Score E Sequences producing significant alignments: (Bits) Value seq556 417 2e-112 seq439 107 5e-19 >seq556 Length=23517 Score = 417 bits (462), Expect = 2e-112 Identities = 977/1443 (68%), Gaps = 46/1443 (3%) Strand=Plus/Minus Query 6978 AATGCCGATTCAGCAACTTCCGCTTATGAAAGGTGTCGGCAAAGACTTTCGAA-ACGCCG 7036 |||| |||| |||| | || || || |||||| |||| |||| | ||| |||||| Sbjct 8531 AATGGCGATAATGCAATTACCCCTGATAAAAGGTCTCGGTAAAG-CGCGCGATGACGCCG 8473 Query 7037 ACTATATCGACTATCTGCCAGTGAATATGTTGGCTACACCCAAAGAAATCCTGAACAGCA 7096 | ||||||||| |||| || |||||| ||||||| ||||| | |||| || Sbjct 8472 ATTATATCGACGCCTTGCCGGTCAATATGCTGGCTACGCCCAAGCCGGTATTGAATGCCA 8413 Query 7097 GCGGATATCTTCGCTCATTCCCGGGCATTGCCA--AACGTTCTGATGTGAATGGTGTATC 7154 |||| ||||| ||||| || || || |||||| || | | || || || || || Sbjct 8412 GCGGTTATCTACGCTCGTTTCCCGGTATTGCCCGCAAAG--CAGAGGTCGCCGGGGTGTC 8355 Query 7155 GCGCGGTGTCGAGTACAA----CATGGCGCAGAGTGCTGTTTATCGCGTGTGTGGTGGGA 7210 || || || ||||||| |||| ||| | |||||||||| | ||| | | Sbjct 8354 CCGAGGCGTTCAGTACAATACCCATGAAA-AGA---CGGTTTATCGCGGGC-TGG--GAA 8302 Query 7211 AGC---TCTACAAAGGCGA--AAGCGAAGTCGGTGACGTCGCTGGAAGTGGTCGCGTATC 7265 | | | ||||||||| | || ||| ||| | | ||||||| |||||| ||| Sbjct 8301 ATCAATTATACAAAGGCCATAAACCGATAGCGGATA--TTGCTGGAAAGGGTCGC--ATC 8246 Query 7266 A--ATGGCGCATGGTCG-AACATCTCAGGCTGTAG--GCGTTAATGGTCAACTGGTCGAG 7320 | |||||| | | || |||| |||||| |||| ||| | || || || Sbjct 8245 AGCATGGCGTTTAGCCGCAACAG-TCAGGCGGTAGCAGCGGCA--GGAAAAATGACGCTC 8189 Query 7321 TATCGCTATGATGGCACGGTTAAAACAGTCTCAAACTGGCCTACTGATAGCGGATTCACT 7380 || || || ||||||||||| |||||| | ||||||||| | || | || ||| Sbjct 8188 TACCGTTACGATGGCACGGTAAAAACACTGGAAAACTGGCCGAAAGACAAAAAATACACG 8129 Query 7381 CAGTATGAGTTAGGCTCAGTCCGCGATATTACGCGCTTGCGTGGGCGTTATGCGTGGTCA 7440 || || || | || | || || ||||| | ||||| || ||||||| |||| Sbjct 8128 CAATACGATATTGGTACCGTGCGGGATATGTGCCATTTGCGCGGACGTTATGTCTGGTGT 8069 Query 7441 AAAGACGGCACTGATTCATGGTT--TATCACTGACCTTGAAGACGAATCGCATCCTGACC 7498 ||||||||||| ||| || || | |||| || | ||||| ||||| || ||||||| Sbjct 8068 AAAGACGGCACCGAT--ATTTTTGGTGTCACCGATTTGGAAGATGAATCTCACCCTGACC 8011 Query 7499 GTTACAGCGCACAATATCGCGCAGAATCGCAGCCGGACGGCATCATCGGCATCGGAACAT 7558 | ||| |||| | |||||||| ||||| || || |||||||| ||||| || | | | Sbjct 8010 GCTACCGCGCGCTGTATCGCGCCGAATCACAACCCGACGGCATTATCGGTATTGATAGCT 7951 Query 7559 GGCGAGACTTCATCGTCTGCTTTGGCTCATCGACGATAGAATATTTCTCCCTGACGGGCG 7618 |||| || || || |||||||||||| | || || || |||||||| |||||||| || | Sbjct 7950 GGCGCGATTTTATTGTCTGCTTTGGCGCGTCCACCATTGAATATTTTTCCCTGACCGGGG 7891 Query 7619 CAACC-ACTGTTGGTGCCGCTTTGTATGTCGCCCAGCCATCGTTGATGGTGCAAAAAGGA 7677 | || || | | |||| | |||| ||| ||||| | | ||||| | ||||| Sbjct 7890 CGGCCGACGGGCAAT-CCGCCATCTATGCCGCACAGCCTGCACTCATGGTCGAGAAAGGC 7832 Query 7678 ATCGCCGGAACCTACTGCAAAACGCCGTTTGCTGATTCGTATGCGTTCATCAACAATCCG 7737 || ||||| ||| ||||||| || | | | | ||| | ||| | |||||| | ||| | Sbjct 7831 ATTGCCGGGACCCACTGCAAGACCCGGCTCGGCGATGCTCATGTGATCATCAGCCATCAG 7772 Query 7738 GCAACAGGTGCGCCGTCTGTTTACATCATCGGCTCCGG-TCAGGTATCACCAATCGCCAG 7796 || || || |||||||| || ||| | || || || |||| || | || |||| Sbjct 7771 GCCACCGGCGCGCCGTCGGTATACCTGAT-TAATCAGGCGCAGGCGACATCGATTGCCAC 7713 Query 7797 CGCGAGCATTGAGAAAATACTACGCTCCTACACTGCTGATGAACTGGCTGATGGCGTGAT 7856 || | ||| |||||||| |||||| |||||| ||||||||||| | ||| || Sbjct 7712 GGCCACCATCGAGAAAATTCTACGCAGCTACACACACGATGAACTGGCGAGCGCCGTCAT 7653 Query 7857 GGAGTCTCTGCGATTTGATGCTCATGAGTTGCTGATTATCCACCTTCCGCGCCACGTCCT 7916 ||| | | || || || || || || || ||||||| | ||||| || || | Sbjct 7652 GGAAACCGTCCGTTTCGACAGCCACGAATTAGTGCTTATCCATTTGCCGCGACAGGT-GT 7594 Query 7917 CGTG-TACGACGCATCTTCAAGCGCCAATGGTCCTCAATGGTGTGTGTTGAAAACAGGCC 7975 ||| || ||||| | | | | || || || |||||| | || ||||||| ||| Sbjct 7593 TGTGTTATGACGCCGCGGCCAACCAGAACGGGCCGCAATGGAGCCTGCTGAAAACGGGCT 7534 Query 7976 TGTATGACGATGTGTACCGCGCTATCGACTTCATTTACGAAGGCAATCAGATAACGTGCG 8035 | ||| ||| | || |||| ||||| || || | | | | |||| | || || | Sbjct 7533 TTTATCACGCTCCCTATCGCGGCATCGATTTTATGTTTGCCGACCATCACCTCACCTGTG 7474 Query 8036 GCGATAAGCTGGAATCTGTTACCGGGAAACTGCAATTCGACATCAGCAGC-CAGTACGAC 8094 ||||||| | || | | ||| |||| | || | |||| | || || || || Sbjct 7473 GCGATAAACACGATGCCCTCCTCGGCCAACTTGATTTTG-CATCTTCTGCGCAATATGAA 7415 Query 8095 AAGCAACAGGAACACCTGCTGTTTACTCCGTTGTTCAAAGCGGATAACGCCAGAGTTTTC 8154 || | ||||| || | || | ||| ||| | ||||| || ||||| ||| | || || Sbjct 7414 AAACCGCAGGAGCATGTTCTCTATACCCCGCTTTTCAAGGCAGATAATGCCCGCGTATTT 7355 Query 8155 GACCTTGAAGTTGAATCGTCAACTGGCGTTGCGCAGTACGCTGACCGCCTGTTCCTCTCT 8214 || ||||| | || | ||||| ||||| ||||| ||| |||||||| |||||||| Sbjct 7354 GATTTTGAACTGGAGGCATCAACCGGCGTGGCGCACATCGCCGACCGCCTCTTCCTCTCC 7295 Query 8215 GCTACCACTGACGGCATAAATTACGGGCGTGAGCAGATGATTGAGCAGAATGAACCGTTC 8274 || ||| | |||||||| ||| || || || ||||||||| | || |||| ||||| Sbjct 7294 GCCACCGCCGACGGCATGCATTTTGGCCGCGAACAGATGATTAACCAAAATGCGCCGTTT 7235 Query 8275 GTTTACGACAAGCGCGTTTTGTGGAAGCGAGTAGGGCGCATCAGGAAAAATGTCGGTTTC 8334 | || ||| |||| || | ||| ||| || || |||||| ||||||||||| || Sbjct 7234 GCGTATGACCAGCGAATTCTCTGGCGGCGGGTTGGCTACATCAGAAAAAATGTCGGCTTT 7175 Query 8335 AAATTGCGCGTTATCACGAAGTCACCAGTAACACTATCCGGGTGTCAAATTCGTCTGGAG 8394 ||| | || || ||||| || || || || || ||||| ||||| || | |||| Sbjct 7174 AAAGTACGGGTGATCACCTCATCGCCCGTGACGCTCTCCGGTTGTCAGATAAGGATGGAA 7115 Query 8395 TAA 8397 ||| Sbjct 7114 TAA 7112 Score = 140 bits (154), Expect = 8e-29 Identities = 233/334 (70%), Gaps = 2/334 (1%) Strand=Plus/Minus Query 14665 AATGTCAGATATCACCGCAAATATTGTGGTAAGCATGCCTTCGCAACTCTTCACTATGGC 14724 |||| | ||||| || |||| ||||| ||| |||||| || ||| | || || | Sbjct 2461 AATGGCTGATATTACGCCAAACATTGTCGTATCCATGCCGTCACAAATTTTTACCCAGCG 2402 Query 14725 GCGTTCTTTTAAAGCC-GTAGCCAATGGCAAAATTTATATCGGAAAAATTGACACTGACC 14783 || ||||| || ||||| || ||||||||||| ||||| ||||| ||||| |||| Sbjct 2401 CCGGGAATTTAAGTCCTGTAGC-AACGGCAAAATTTACATCGGCAAAATCGACACCGACC 2343 Query 14784 CGGTAAATCCTGAAAACCAGATTCAGGTTTATGTAGAGAATGAAGACGGATCTCACGTCC 14843 | || ||||||| || || | |||||| | || |||||||||||| | || Sbjct 2342 CCACAATAGCTGAAAATCAAATACCCGTTTATCTGGAAAATGAAGACGGAAAATATACCC 2283 Query 14844 CTGTTTCTCAGCCAATTGTTATCAATGCTGCCGGATATCCTGTGTACAACGGGCAGATTG 14903 || ||||| || | ||| | | || || || || |||||||||||||||| Sbjct 2282 GAGTCGGCCAGCCGCTTATCATCGGCACGGGTGGCTACCCGGTCTACAACGGGCAGATTG 2223 Query 14904 CCAAATTTGTAACTGAGCAAGGCCATTCAATGGCTGTATATGATGCGTATGGTTCGCAGC 14963 ||||||| || || || |||||||| | ||||| || ||||| | | || |||| Sbjct 2222 CCAAATTCGTGACAGAAGAAGGCCATGCTATGGCAGTGTATGACGGCGACGGGGTACAGC 2163 Query 14964 AGTTCTATTTTCAGAATGTGCTGAAGTACGATCC 14997 |||| ||||| | || |||||||| || || || Sbjct 2162 AGTTTTATTTCCCCAACGTGCTGAAATATGAGCC 2129 >seq439 Length=76666 Score = 107 bits (118), Expect = 5e-19 Identities = 203/293 (69%), Gaps = 8/293 (3%) Strand=Plus/Minus Query 764 TATCTGCTGGGTGGAAGAAGCGGAAGCGGTAACGAAGGAATCATGGGATATCCTGATACC 823 |||||||||||| ||||||||||||||||| |||||||| || ||||| ||||| | || Sbjct 57629 TATCTGCTGGGTTGAAGAAGCGGAAGCGGTGACGAAGGACTCCTGGGACGTCCTGTTGCC 57570 Query 824 AACCATCCGC-AAGCC--GTTTTCCGAAATATGGGTGAGCTTTAACCCTAAGAACATCCT 880 | || ||| || | | ||||| | ||| | |||||| || || || || || Sbjct 57569 CTCAATACGCGGAGACAAGAACGCCGAAGTGTGGATTTCCTTTAATCCCAAAAATATTCT 57510 Query 881 CGACGATACCTATCAGCGATTCGTCGTAAATCCTCCTGATGATATTTGTCTGCTGACGGT 940 || ||||| |||||||||||| | || ||||| || | | | | |||| || Sbjct 57509 TGATGATACGTATCAGCGATTCATTGTTAATCCGCCCAAAGGTGCCATCATCCTGAAGGC 57450 Query 941 GAACTACACCGACAACCCGCACTTTCCTGA---AGTTCTCCGTCTGGAGATGGAAGAGTG 997 ||||||| ||| || || | || | ||| |||| || |||||| ||||| Sbjct 57449 CAACTACAGCGATAATCCCTATTTCCATGACTCCCCACTCCCTCAACAGATGGCGGAGTG 57390 Query 998 CAAA-CGCAGAAATCCGACACTGTATCGTCACATCTGGCTGGGTGAGCCGGTA 1049 |||| || | ||| ||||| || || |||||||| || ||||||||| Sbjct 57389 CAAAGAGCGTGACGTTGAC-CTGTACCGCCATATCTGGCTTGGCGAGCCGGTA 57338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 123850371788448