Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq184 210 2e-49 seq54 154 1e-32 seq18 120 2e-22 >seq184 Length=525875 Score = 210 bits (232), Expect = 2e-49 Identities = 485/723 (67%), Gaps = 22/723 (3%) Strand=Plus/Plus Query 43757 GCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTGCA 43816 || || |||||||| || ||||| |||||| | || ||| | | |||||| | Sbjct 28274 GCTTCTTTTTGGACGGCGGAAGAGGTTGATCTCGCTGCAGATCTTGATCATTGGGAGCGA 28333 Query 43817 TTAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGAC 43876 |||| | ||| |||||||| || |||||||| |||||||| || ||| Sbjct 28334 TTAACTGATGATGAACGTCATTTTATTTCACATGTTTTGGCTTTTTTTGCGGCATCTGAC 28393 Query 43877 GGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCA 43936 || || || ||||| ||||| || || ||| | |||||||||||| || | ||||| Sbjct 28394 GGCATTGTTAATGAGAATTTAGTGGAACGTTTTTCTCAAGAAGTTCAAGTAACCGAAGCT 28453 Query 43937 CGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTT 43996 || || |||||||| |||||||| ||||| |||||| | || ||||||||||| ||| | Sbjct 28454 CGTTGCTTTTATGGTTTTCAAATAGCCATCGAAAATGTACACTCGGAAATGTATAGTTTA 28513 Query 43997 CTGATAGATACGTACATCAAAGATGGGCACGAGAAGC-ATCGATTGTTTAATGCGATAGA 44055 || || || || | ||| |||| | | || | || || | |||||||| || || Sbjct 28514 CTTATTGAAACATTTATCGCAGATCCGAAAGA-ACGCGATTATCTTTTTAATGCCATTGA 28572 Query 44056 AACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGA 44115 || | || ||||| | ||||| || ||||| | |||||| ||| Sbjct 28573 GACGATGCCGTTAGTTAAAAAGAAAGCGGAATGGGCTTTAGCTTGGATA---TCATCGCG 28629 Query 44116 TTC------TTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTC 44169 ||| |||||| || || | | || ||||| | || ||||| || |||||| Sbjct 28630 TTCGGCGAATTTTGGTGAGCGTGTCATAGCTTTTGCTGCCGTCGAAGGTATATTCTTTAG 28689 Query 44170 AGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTT 44229 ||| ||||| | ||||||||| | |||||||| || | ||||| || | || || Sbjct 28690 TGGAAGTTTTGCTTCGATATTTTGGCTTAAGAAACGTGGAATAATGCCGGGTCTAACATT 28749 Query 44230 TTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTACT 44289 ||| ||||| |||||| || |||||||| ||||||||||| ||||| | || | | Sbjct 28750 TTCTAATGAATTAATATCACGCGATGAAGGTTTACATTGCGAATTTGC--GGTTTTAATG 28807 Query 44290 TGGATATCTAGGAGACGATAAGCCTTCATGTAAGACA-ATTACAGATATTGTTGTAGAGG 44348 | | || | || || | || | || || || ||| || || | || | Sbjct 28808 TTTAAATATTTGATACAAAAACCGACCAAAGAACGCATATT--GGAAATAATAACCGATG 28865 Query 44349 CAGTAAAGATAGAACAAGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATG- 44407 | || || || ||| | |||||| ||||| ||| |||| || |||||||| || ||| Sbjct 28866 CCGTTAAAATTGAAAAGGAATTTCTGACAGAAGCTCTACCAGTCAATTTAATCGGTATGA 28925 Query 44408 --AATGAACTTTTGATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAAC 44465 |||||| | ||| ||||| || ||||| | || |||||||| || || ||| Sbjct 28926 ATAATGAAAGT---ATGTGTCAATACATAGAATATGTAGCGGATCGTTTGCTATTAGAAT 28982 Query 44466 TGG 44468 ||| Sbjct 28983 TGG 28985 >seq54 Length=1370671 Score = 154 bits (170), Expect = 1e-32 Identities = 503/772 (65%), Gaps = 16/772 (2%) Strand=Plus/Plus Query 40650 TCAATATTTGGATGTCAAAATAGATACAATTTGAGA-AATCAGTTTCCGTTGCTAACTAC 40708 ||||||||||| ||| | | ||||||| | || || || || ||||| ||||| Sbjct 1326724 TCAATATTTGGTGCGCAATTGCGTTTCAATTTGCGCGAAACA-TTCCCTTTGCTTACTAC 1326782 Query 40709 aaaaaaaaTGTTTTGGAAAGGCATTGCAGAAGAACTGTTATGGTTTATCAAAGGTTGTAC 40768 |||||| | |||||| | | | |||||| || ||||||||||| | || | || Sbjct 1326783 GAAAAAAGTATTTTGGCGTGCTGTAGTAGAAGAGCTATTATGGTTTATAAGCGGCAGCAC 1326842 Query 40769 TAATGCTAAGAAATTATCAGAAAGAGGAGTGCACATTTGGAATGCGCACAGTTCTAAAAC 40828 | |||| || || | | | | | || || ||| ||| | ||| | Sbjct 1326843 TGATGCCAAAGTGCTACAAAATAAAAACATCCATATATGGGATGGTAATAGTAGTCGCGA 1326902 Query 40829 ATATTTGTCTAGCATAGGATTACAAGATAGGGATGAAGGTGATCTTGGTCCTGTTTATGG 40888 || |||| ||| || || | ||| | || |||||||| | || || ||||||| Sbjct 1326903 ATTTTTGGATAGATGCGGTTTTAATGATCGCGAAGAAGGTGACTTAGGACCCATTTATGG 1326962 Query 40889 ATTTCAGTCGCGACATTTTGGAGCAAAATATGACACTATGT-ACTCTGATTATACCAATA 40947 ||||||| ||||||||||||||| ||||| ||| ||| || ||||| | Sbjct 1326963 TTTTCAGTGGCGACATTTTGGAGCGCAATATAGAACT-TGTCACGAAAATTATGGTACGG 1327021 Query 40948 AAGGAATGGATCAATTACAGTGCGTTAT-AGAT-----ACGATTAAATCCGATCCCGATA 41001 |||| | || |||||| | | | || ||| |||| |||||| | | ||| Sbjct 1327022 AAGGGGTCGACCAATTAAAAAACATCATTAGAACAATAACGAC-AAATCCTA--CAGAT- 1327077 Query 41002 GCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGATGGCATTGCCAC 41061 |||||||| || || | | | ||||| || || ||| ||||| || |||| Sbjct 1327078 --CGACGTATGATTTTATCCTCTTGGAATCCGGTAGATATACCAAAAATGGCTTTACCAC 1327135 Query 41062 CTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATC 41121 | ||||||| || ||| ||||| || |||| |||| ||| || ||| | |||| Sbjct 1327136 CCTGTCATTGCTTGGCTCAATTTTATGTGGCCAATAATGAATTGTGCTGCCAACTTTATC 1327195 Query 41122 AAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCA 41181 || | | || ||||| | || ||||| ||||| ||||| ||||| || | | Sbjct 1327196 AACGTAGTGCAGATATGGGCTTGGGTGTCCCCTTTAATATAGCCTCGTATGCCCTCTTAA 1327255 Query 41182 CGTATATGATTGCACACGTTACCAATTTAAAACCTGGTGAATTTGTTCACACGTTAGGAG 41241 || | ||||||||||| | ||| | ||||| || || ||||| ||||| || | Sbjct 1327256 CGAACATGATTGCACATTTAACCGGCCTTAAACCAGGCGACTTTGTGCACACAACCGGTG 1327315 Query 41242 ATGGACATATTTACATTAATCACATAGAGCCGTTAACAGAACAACTGACACGAAAACCTA 41301 || ||||| |||| ||||| || | ||||| ||||| ||| | || || ||||| Sbjct 1327316 ATACCCATATATACAAAAATCATATTCAACCGTTGACAGAGCAATTAACGCGTAAACCGC 1327375 Query 41302 GACCATTTCCAACGCTACTTATTAAACGCGCTGTTGAAAACATTGATGATTTTTGCATCG 41361 | ||||| | | |||| ||||| || || ||||| ||||| ||||| | | Sbjct 1327376 GTATGTTTCCCAAATTGATTATAAAACGAGCCGTGGAAAATATTGAGGATTTCAAACTGG 1327435 Query 41362 ATGATTTTGTCGTTTGCGATTACAATCCGTACCCTAAAATCCACATGGACAT 41413 | ||||| | || |||| ||||| || || ||||| || ||||| || Sbjct 1327436 AAGATTTCGAAATTGTGAATTATAATCCCTATCCAAAAATTCAAATGGAAAT 1327487 >seq18 Length=2944136 Score = 120 bits (132), Expect = 2e-22 Identities = 226/332 (68%), Gaps = 8/332 (2%) Strand=Plus/Minus Query 19611 TGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTTAACCAACT 19670 |||||| ||||||||||| || |||||||| || | ||| | ||||| || | ||||| Sbjct 566195 TGGAGTCCATGACACTGTAGTGAATCAACTGTTGGCTAAAATTGACGGAGTGGAGCAACT 566136 Query 19671 GAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGCGCCTTATT 19730 ||||||||||| || ||||| ||||| ||| | | || | || || || || || Sbjct 566135 AAATAATATTTTGGTAATTGGTATGACAAATCGTCGCGACATGATTGATGAGGCTTTGTT 566076 Query 19731 ACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAATGTGGACGTGT 19790 ||| || || || |||||| | | || ||||| | || || | || |||| | || Sbjct 566075 ACGTCCTGGCCGCTTGGAAGTGCAAATGGAAATCAGTTTGCCTAACGAGCCTGGAAGAGT 566016 Query 19791 GGAAATTTTAAACATACATACATCAACCATGCGACAAAATAACCTTTTAAA----TGACG 19846 ||||| |||| || ||||| | ||||| | ||| | ||| || | Sbjct 566015 ACAAATTCTAAATATTCATACGAAACGTATGCGTGATTTTAA----TAAAATCGCTGGGG 565960 Query 19847 ATGTAGATCTAGAAGAAATTGCAGCGGCTACCAAAAACTATAGCGGCGCAGAACTTGAGG 19906 |||| ||| | ||||||| || | ||| || || | ||||||||| ||| | || | Sbjct 565959 ATGTGGATACAAAAGAAATCGCTACTCTTACAAAGAATTTTAGCGGCGCTGAATTGGAAG 565900 Query 19907 GATTAGTGAGGGCCGCCCAATCAATTGCAATG 19938 | ||||| | || |||||||| | ||| ||| Sbjct 565899 GTTTAGTACGTGCTGCCCAATCTACTGCTATG 565868 Score = 102 bits (112), Expect = 6e-17 Identities = 202/296 (68%), Gaps = 6/296 (2%) Strand=Plus/Minus Query 19243 ATTGGAGGATTGAGTAAAGAGTTTTCTGAAATCTTTCGTAGAGCATTTGTGTCGCGTGTT 19302 ||||| || ||| |||||| || || || || ||| | || |||| || | || Sbjct 566627 ATTGGCGGCTTGGATAAAGAATTCAATGCTATTTTCCGTCGTGCTTTTGCTTCAAGAGTA 566568 Query 19303 TTTTCTGCAGATGTCATTAAACAATTGGGATGTAAACATGTTCGTGGACTTTTGCTTTAT 19362 ||| || | || || || |||||||||| || || ||||| || |||| || ||| Sbjct 566567 TTTCCTCCGGAAGTGGTTGAACAATTGGGTTGCAAGCATGTCAAAGGTATTTTACTCTAT 566508 Query 19363 GGGCCACCGGGTTGTGGAAAAACATTAATTGCGAG--AGAACTTAGTAAAT-TACTTACA 19419 || || || || || ||||| | || || | ||| ||| ||| | || | Sbjct 566507 GGACCTCCTGGCACAGGTAAAACTCTGATGGCACGTCAGA---TAGGCAATATGCTGAAC 566451 Query 19420 AAACAACCTCCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCG 19479 | || ||||| |||||||||||| | | ||| | ||||||||||| ||||| Sbjct 566450 GCTCGTGAGCCAAAAATAGTAAATGGTCCTCAGGTTTTAGACAAATATGTAGGCGAATCG 566391 Query 19480 GAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGG 19535 |||| ||| || |||| ||||| ||||| |||||||||||| ||||| | |||| Sbjct 566390 GAAGCTAATATAAGACGGTTGTTCGCTGAGGCTGAAGAAGAAGAAAAAAGAGTAGG 566335 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397448002564255