Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq148 188 6e-43 seq308 122 7e-23 seq53 122 7e-23 >seq148 Length=545759 Score = 188 bits (208), Expect = 6e-43 Identities = 892/1393 (64%), Gaps = 48/1393 (3%) Strand=Plus/Minus Query 130406 TTTTCGACGGTGAATTGAATGGCATTGGTGGCCGGCTTGGTGCGCAAATAATACATGCCT 130465 || ||||| || ||||| |||| ||||| || ||||| || | | ||||||||| || Sbjct 221666 TTATCGACTGTAAATTGTATGGGATTGGATGCTGGCTTTGTCCTTAGATAATACATACCA 221607 Query 130466 GTTTTGAGTCCAATTTTGTGTCCATAATTGTGGATGCTGCACATTGTTTGGTAATTGGGT 130525 ||||| | || ||| ||||||| || ||| | ||| | | ||| | | Sbjct 221606 GTTTTCAAACCCGCTTTCCATCCATAAAAATGCATGGAGGACAATTTACCATAACTAGCG 221547 Query 130526 TGCGCCACGAATATGTTGAGCGATTGCGATTGATCAATAAAAGCGCCCCTGTCTGCAGCC 130585 | |||| || ||| | |||||| |||||| || |||||||| | || ||||| Sbjct 221546 TCAGCCATATGTACGTTAAACGATTGGCTTTGATCGATGAAAGCGCCGCGATCGACAGCC 221487 Query 130586 ATGTCGAGCATGGTTTTATTTTTCATCTCCCAAGCGGTCTTGTATAGATCCCTAATGTGT 130645 ||||| | | | || | || |||||| | || || |||| || | |||| | Sbjct 221486 ATGTCAATTGTTGACTTCAGTGAAATTTCCCAAACTGTTTTATATAATTCTTTTATGTCT 221427 Query 130646 TTGGGTATGCGCGCAATCGATTGAACGCTACC--GTTGTTGGCTATAAT------TTCGT 130697 || |||||| | || ||| | ||| | ||| | | ||||| ||| | Sbjct 221426 TTAGGTATGGCTTCGATTTTTTGTATTGAACCACGATGT-GCCCATAATAAGTTTTTCAT 221368 Query 130698 TGCGCATACTTTTATCGTACAATCCAAGCTGTACAAGATCTTTTACCAAATGATTATTAA 130757 ||| | || | | | || | | || ||| |||||| | |||||||| ||| | Sbjct 221367 GTCGC---CATTC--CAAAGATTCAACTCCGT-CAA-ATCTTTAAGCAAATGATGATTGA 221315 Query 130758 TGATTTGAAAATCACCAGCCAGGACGCGTCTAACGTAAATGTTGCTCGTGAACGGTTCAA 130817 | |||||||||| | || |||| |||| ||| || |||| |||| Sbjct 221314 CCACAATGAAATCACCAGATAATACACGTCGTGTATAAACGTTTGAAGTATACGGCTCAA 221255 Query 130818 AGGATTCGTTGTTGCCGAATATTTGTGCTGTAGTTGCGGTGGGCATGTATGCCACTAATA 130877 |||||||||||||||| | ||||| || |||| ||| || ||||| ||||| || | Sbjct 221254 AGGATTCGTTGTTGCCAAGAATTTGAGCAGTAGATGCCGTAGGCATTGGGGCCACCAACA 221195 Query 130878 GAGAATTACGAAGACCGTGCGTCGTGATTTTTCGCTTCAATTCATCCCAATCCCATAGAG 130937 ||||||||| | ||| || | |||| | || | | |||||||||| ||| Sbjct 221194 AAGAATTACGCACACCATGATTTTTGATGTCATCTTTAAGAGCCGCCCAATCCCAAAGAT 221135 Query 130938 AGGTAGGTTTGACATTGTTCCACATATCAAATTGTAGTATGCCTTTACTGGCGGGACTGG 130997 ||||| || ||||||||||| ||| |||| || || ||||| || | || || Sbjct 221134 CAGTAGGCTT---CTTGTTCCACATGTCATATTGAAGAATACCTTTGCTAACTGGGCTAC 221078 Query 130998 ATTCGAACGATTCGTAGATTCCTTCGACACGAGCCAGGTCGTTGCTAGCTTCCAAAGCTC 131057 ||| | | |||||| || | |||| || |||||| || ||||| | Sbjct 221077 CTTCATATGTTTCGTACGGGCCATATTGTTTGGCCAACTCACAGCTAGCCTCTAAAGCAC 221018 Query 131058 CGTAATAAATGGTTTCGGCAATTTGTTTATTTAATTGTTTCGCTTGGTTGCTCTCGTAAG 131117 ||||||| ||||||||| |||||||| ||||||| | || | | ||| || || | Sbjct 221017 CGTAATATATGGTTTCGAAAATTTGTTGATTTAATAGAACAGCATTTTCGCTTTCATATG 220958 Query 131118 GAAATTTCATTAAAATAAAAGCGTCTGCGAGACCCTGTATCCCAACGCCCACCGGTCTAT 131177 || | ||||||||| || ||||| || | || || | || | || | || | | Sbjct 220957 GATAACGCATTAAAATTAATGCGTCAGCAAATCCTTGGACGCCTATACCAATTGGACGGT 220898 Query 131178 GTTTTAAATTACATTTACGCGAACATTCGG--TGGGATAAAGGTTAATGTCAATTATTTT 131235 | |||||| || | | | | ||| |||||| |||||||||||||||||| Sbjct 220897 GACGCAAATTAGATCTTTTGG--CTTCCGGCAACGGATAATAGTTAATGTCAATTATTTT 220840 Query 131236 GTTTAAATTGCGCACTACAATTTGTGTGACGCTTTTCAATTTGTCGAAATCAAACGTGCC 131295 ||| | || | || || | || || ||||||||||| ||||| | | Sbjct 220839 GTTGAGGTTCCTTGTTATAAGCTTCGTAACTTCTTTCAATTTGTTAAAATCGTATTTTTT 220780 Query 131296 AGTTTCGAGGTTTACAAATTGATTTACACATATTGACGCCAGATTACAAACTGCCGTTTC 131355 | | || || || || || | || || || ||||| || |||||||| |||| Sbjct 220779 A--TCCGTAGTCACGAACATGTTTAATGCA-ATCGAGGCCAGGTTGCAAACTGCAATTTC 220723 Query 131356 GTCATAATCGCA--ATACTGAACAATTTCGGCGCACAAATTACTGCTCTTTATGGTGCCC 131413 || | || | || | |||||||| | ||||| ||||| ||||| || || Sbjct 220722 ATC--AGCCGAAGTGTATTCGACAATTTCTGTACACAAGTTACTAGATTTTATAGTACCA 220665 Query 131414 AAATTTTGTTGATTGCTTTTAGCATTCACATGGTCCTTGTACATCATGTAGGGCGTGCCC 131473 | || |||||||| || || ||| | || ||||| | ||| || || || || Sbjct 220664 ATGTTCTGTTGATTACTCTTGCGATTGCAAGCATCTTTGTAAAGCATATAAGGAGTTCCA 220605 Query 131474 GTTTCGACTTGAG-TTTCAATAATGTATCGAAAGAGTTTTCGAGCAGACAATTGAT--AT 131530 || || |||||| || ||| || | | || ||||| ||||| | || Sbjct 220604 GTCTCCGCTTGAGACTTGCATATTGCAAACCACAAG-GCACGAGC-TTTAATTGTTTGAT 220547 Query 131531 TTGTATTGGCCGCGTTTTTCGTAATTTTCGTACAACGTTTCAAAGT--TTTGGCCAAAC- 131587 | | ||| || | ||||||| || ||| || | ||||| | | | |||||| Sbjct 220546 TCGCTTTGCCCTC-ACTTTCGTATTTCATGTATAATTTGTCAAATTCATCTCCCCAAACT 220488 Query 131588 GAACTGTCCAAATTGGGACATTCGCTGGGACACATTAGCGACCACACGCCGTTCTGTTCA 131647 || |||| ||||||| ||||||||||| ||||| |||| | | || Sbjct 220487 TCAC---ACAAACCAGGACATTTATGAGGACACATTAGAGACCAATCGCCATCATCCTCT 220431 Query 131648 ACTCGCTTCATAAACAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCT---TTT 131704 |||| ||||| |||| |||||| | ||||| || || |||| ||| | ||| | | Sbjct 220430 ACTCTTTTCATGAACAGATCCGGTATCCATAGGGCATAAAACAAATCGCGTGCTCGATCT 220371 Query 131705 TTCTCTTCTGTACCCATAAtttttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAG 131764 ||||| || ||| | | | |||||||||| || ||| || |||| || || ||||| Sbjct 220370 TTCTCCTC---ACCAAAATTCTTTTTCAAATCTAGAAATTCGAAAACATCTGCGTGCCAA 220314 Query 131765 GGTTCCAAATACA 131777 || ||||| |||| Sbjct 220313 GGCTCCAAGTACA 220301 >seq308 Length=190705 Score = 122 bits (134), Expect = 7e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGT-CGCT 27079 || || ||||| ||||| || | ||||||||| || |||||||||||||| || | || | Sbjct 86622 CCACCTCGCAAACGCAACACAAGATGTAACGTGGATTCTTTTTGAATATTATAATCCGAT 86681 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 ||| |||| | ||||| | ||||| || ||| | || | || ||||| || || || Sbjct 86682 AATG-TGCGACCATCTTCCAATTGTTTTCCAGCGAAGATCAATCGTTGTTGGTCGGGTGG 86740 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | |||||||| || |||||| ||||| |||| | ||| || | || || || Sbjct 86741 AATTCCCTCTTTGTCCTGAATCTTGGCTTTCACATTTTCAATAGTATCAGAGGGCTCGAC 86800 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || ||||| || | |||||||| || ||||| ||||| || |||||| Sbjct 86801 CTCAAGAGTAATGGTCTTGCCCGTAAGGGTTTTTACAAAAATCTGCATA 86849 >seq53 Length=1361919 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || ||||| || || |||||||| |||||||| || ||||| |||||||| || | Sbjct 1232798 CCGCCACGCAAACGTAAGACCAAATGCAACGTAGATTCCTTTTGTATATTGTAATCAGAC 1232739 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | ||||| ||||||| | ||||||||| ||| | || | |||||||||||| || || Sbjct 1232738 AATGTGCGCCCGTCTTCTAACTGTTTACCAGCGAAGATTAAACGCTGTTGATCTGGTGGG 1232679 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || || ||||| ||||| || | | || | ||| || | | ||||| Sbjct 1232678 ATTCCTTCCTTATCTTGAATCTTAGCCTTAACATTCTCAATAGTATCGGAAGGCTCAACC 1232619 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || | || |||| |||||| |||| || || ||||| |||||||| Sbjct 1232618 TCCAAGGTGATAGTTTTGCCAGTCAATGTCTTGACAAAAATTTGCAT 1232572 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || ||||| ||||| |||||||| |||||||| || ||||| |||||||| || | Sbjct 1239759 CCACCACGCAAACGCAAGACCAAATGCAACGTAGATTCCTTTTGTATATTGTAATCAGAC 1239700 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | ||||| ||||||| ||||||||||| ||| | || | ||| |||||||| || || Sbjct 1239699 AATGTGCGCCCGTCTTCTAGCTGTTTACCAGCGAATATTAAACGTTGTTGATCTGGTGGG 1239640 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || || ||||| ||||| ||| | | || | ||| || | | ||||| Sbjct 1239639 ATTCCTTCCTTATCTTGAATCTTAGCTTTAACATTCTCAATAGTATCGGAAGGCTCAACC 1239580 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || | || | || ||| || |||| || ||||| ||||| ||||| Sbjct 1239579 TCCAAGGTGACAGTTTTCCCAGTCAATGTCTTCACGAAGATCTGCAT 1239533 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || ||||| | |||| |||||||| || || || ||||| || |||||||| || Sbjct 1241561 CCACCGCGGAGACGCAGCACCAAATGCAAAGTTGATTCTTTCTGTATATTGTAATCCGAA 1241502 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | |||| ||||||| | ||||| || || | || | |||||| ||||| || || Sbjct 1241501 AGAGTGCGACCGTCTTCTAATTGTTTGCCAGCAAAGATCAAACGCTGCTGATCTGGAGGA 1241442 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||| |||||||| || || ||| | | |||| | ||| |||| | ||| || Sbjct 1241441 ATACCTTCTTTATCTTGAATTTTTGCTTTAACGTTTTCGATAGTATCTGATGGTTCTACC 1241382 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || | ||| || |||||||| |||| |||||| |||||||||||||| Sbjct 1241381 TCCAAAGTAATGGATTTGCCAGTCAAAGTTTTTACAAAGATTTGCAT 1241335 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 |||||||| | || || || ||||| | || || |||||||| ||||| || ||| | Sbjct 1241789 CCTCCGCGAAGACGTAAGACTAAATGGAGTGTTGATTCTTTTTGGATATTTTAATCGGAC 1241730 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | ||||| ||||||| | ||||| || || | || | |||||||||||| || | Sbjct 1241729 AGAGTGCGCCCGTCTTCCAATTGTTTGCCAGCAAAGATCAAACGCTGTTGATCGGGAGAA 1241670 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||| || ||||| ||| || ||| | ||||| | ||| || | | || || Sbjct 1241669 ATACCTTCCTTATCTTGGATTTTTGCTTTAACCGTTTCGATAGTATCCGACGGCTCTACC 1241610 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || | ||| |||| |||||| |||| |||||| |||||||||||||| Sbjct 1241609 TCCAAAGTAATAGTTTTGCCAGTCAAAGTTTTAACAAAGATTTGCAT 1241563 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || ||||| | ||||| |||||||| || || || ||||| || ||||||||||| Sbjct 1240443 CCACCGCGGAGACGCAACACCAAATGCAAAGTTGATTCTTTCTGTATATTGTAGTCCGAG 1240384 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | || ||||||| |||||||| || || | || | |||||| || || || || Sbjct 1240383 AGAGTACGACCGTCTTCCAGCTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 1240324 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||| |||||||| || || || | | |||| | ||| || | | ||| || Sbjct 1240323 ATACCTTCTTTATCTTGAATTTTTGCCTTAACGTTTTCGATAGTATCCGATGGTTCTACC 1240264 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || | ||| || | |||||| |||| |||||| ||||| |||||||| Sbjct 1240263 TCCAAAGTAATGGTTTTGCCAGTCAAAGTTTTAACAAATATTTGCAT 1240217 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || |||| || | ||||| || || || || |||||||| |||||||| || Sbjct 1232572 TGCCACCACGCAGACGTAGAACCAAGTGCAATGTTGATTCTTTTTGTATATTGTAATCAG 1232513 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 || ||||| | ||||| || ||||| || || | || | |||||| ||||| || | Sbjct 1232512 ACAATGTGCGCCCATCTTCCAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGATCGGGAG 1232453 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | ||| ||||| || |||||| ||| | |||| | || || | | ||| | Sbjct 1232452 GAATACCTTCTTTGTCTTGGATCTTTGCTTTTACATTTTCAATTGTATCAGATGGTTCCA 1232393 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 |||||| ||| || | |||||| |||| || || || ||||||||||| Sbjct 1232392 CTTCTAAAGTGATTGTTTTGCCAGTCAATGTCTTTACGAAGATTTGCAT 1232344 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || |||| || || |||||||| | ||||| || |||||||| || || ||| Sbjct 1234462 CCACCACGCAGGCGTAAGACCAAATGGAGAGTAGACTCCTTTTGAATGTTATAATCGGAG 1234403 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | || | ||||| | |||||||| ||| | || | |||||| || || || || Sbjct 1234402 AGAGTACGGCCATCTTCCAATTGTTTACCAGCGAAGATCAAACGCTGCTGGTCTGGGGGA 1234343 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||| || ||||| |||||| ||| | | |||| | || || | | || ||| Sbjct 1234342 ATACCTTCCTTATCCTGGATCTTAGCTTTGACGTTTTCAATGGTATCGGAAGGCTCGACT 1234283 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || | ||| || | ||| || |||| |||||| || |||||||||||| Sbjct 1234282 TCCAAAGTGATGGTTTTACCGGTCAAAGTTTTGACGAAGATTTGCATA 1234235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424925849655912