Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_027984.1 Length=57677 Score E Sequences producing significant alignments: (Bits) Value seq439 212 2e-50 >seq439 Length=76666 Score = 212 bits (234), Expect = 2e-50 Identities = 405/597 (68%), Gaps = 0/597 (0%) Strand=Plus/Minus Query 4693 CCATTGCTCCCCATATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAA 4752 ||| ||||| ||| | ||| |||| |||||| | ||| |||||| |||| || || Sbjct 70427 CCACTGCTCGCCAAAGGTAAAGCCAAGTTCAGCTAACGCCATATCCATTCTTTCTATAAA 70368 Query 4753 CTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTTCATTCCGCTCAATCACGACATA 4812 ||| || || ||| ||||| | | ||||| || || | || ||||| | ||| | Sbjct 70367 CTCTGGTACGGACTCTTCAAATTTTGAAATGTATTTATCGTCTCGTTCAATAATGACGTT 70308 Query 4813 ATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCAAAGTACCAGGCATCTTTTCG 4872 || || |||||||| ||||| || ||||||||||| ||||| | ||| || ||||| | Sbjct 70307 GTGAAGTCCTTCACGTTTCATTCGAGGGTCATAGTTAGCAAAATGCCATGCGTCTTTCCC 70248 Query 4873 TGTCACCCACATGCTGTACTGCACCTGGGCCATGTAAGCCGATTTTATGGCCTCGAAACC 4932 || ||||||||||| |||| ||||| ||||| || ||||||| ||| | || || || Sbjct 70247 CGTAACCCACATGCTAAACTGGACCTGAGCCATATATTCCGATTTGATGCCGTCAAAGCC 70188 Query 4933 ACCGAGCCGGAACTTCATGAAATCCCGGGAGGTAAACGGGCATTTCAGCTCAAGGCCGTT 4992 | || | || || || || || || || ||||| || || || | ||||| || Sbjct 70187 ATTCAGTCTAAAATTAATAAAGTCGCGTGATGTAAATGGACACTTTAATTCAAGTCCCAG 70128 Query 4993 GCCGTCACTGCATAAACCATCGGGAGAGCAGGCGGTGCGCATACTTTCGTCGCGATAGAT 5052 || ||||| || |||||||| ||||| || |||||| ||||| | || Sbjct 70127 CCCATCACTACAGTCGCCATCGGGGGAGCACGCTACACGCATATCGTCGTCCTTGAATAT 70068 Query 5053 GATCGGGGATTCAGTAACATTCACGCCGGAAGTGAACTCAAAGAGGGTTCTGGCGTCGTT 5112 ||| ||| || |||| | | || | |||||||||||| || ||| || | | Sbjct 70067 GATGGGGACGTCGATAACGGTTAACCCTGTAGTGAACTCAAACAGTCGTCTTGCTACCTC 70008 Query 5113 CTCGTACTGTTTTCCCCAGGCCAGAGCCTTAGCGTTAACTTCCGGAGCCACACCGGTGCA 5172 |||| | ||||||||| | || | | | || || ||||| |||| ||||| || Sbjct 70007 TTCGTTTTCTTTTCCCCATTCTAGCGGCCTTGCCTTCACTTCGGGAGATTGCCCGGTACA 69948 Query 5173 AACCTCAGCCAGCAGGGTGTGGAAGTAGGACATTTTCATGTCAGGCCACTTCTTTCCTGA 5232 || ||| || | ||| ||| |||||| ||| ||| | || | ||| || || ||||| Sbjct 69947 AATCTCGGCAATCAGCTTGTTGAAGTAAGACCGCTTCGTATCCGTCCATTTGTTGCCTGA 69888 Query 5233 TCGGGGTTTTGCTATTACGTTGTGAATTTCTGAAGCTGTGATGACGCCGAGCCGTAA 5289 || || | | || ||| | | ||||| || || ||| |||| || || || Sbjct 69887 ACGTGGGCTGGAAATCACGCAGGAAGCCTCTGAGGCGGTTATGGCGCCAAGGCGCAA 69831 Score = 89.7 bits (98), Expect = 2e-13 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 18759 TTAGTTGGTAAAAATGCCCGCTCCCTCATCCTCTGGACAGAACGAGGCGCAGCCCGTCAC 18818 ||||| || ||||| || || |||||||||||||||||||| || || || | || Sbjct 38527 TTAGTCGGCAAAAACGCACGTAGTCTCATCCTCTGGACAGAACGCGGAGCCGCTTGACAT 38586 Query 18819 GCAAAAATGCTCGAAACTGATCAGGCGTGGGATGTGTTCGAAAAACTGGAAGACTGCTAT 18878 || || ||| | || |||||| | || ||||| || ||||| |||||||||| || || Sbjct 38587 GCCAAGATGTTTGAGACTGATAAAGCATGGGAAGTATTCGAGCAACTGGAAGATTGTTAC 38646 Query 18879 TTCA 18882 |||| Sbjct 38647 TTCA 38650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 184441183844418