Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq148 147 3e-30 >seq148 Length=545759 Score = 147 bits (162), Expect = 3e-30 Identities = 583/910 (64%), Gaps = 17/910 (2%) Strand=Plus/Plus Query 104696 CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGT 104755 |||||| | || | || || ||||| || ||||| |||||||| ||||| ||||| | Sbjct 220381 CGCGATTTGTTTTATGCCCTATGGATACCGGATCTGTTCATGAAAAGAGTAGAGGATGAT 220440 Query 104756 GGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTGAG 104815 ||| |||||||||| | ||||| | || |||||| | | || | ||| || Sbjct 220441 GGCGATTGGTCTCTAATGTGTCCTCATAAATGTCCTGGTTTGTGTGAAGTTTGGGGAGAT 220500 Query 104816 GAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGGTGCCA 104875 || ||||| | |||| || ||||| || || |||| | || | | Sbjct 220501 GAATTTGACAAATTATACATGAAATACGAAAGTGAGGGCAAAGCGAATCAAACAATTAAA 220560 Query 104876 GCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATG 104935 ||| | ||||| || || |||||||||| | |||||||| || || || ||| Sbjct 220561 GCTCGTGCCTTGTGGTTTGCAATATGCAAGTCTCAAGCGGAGACTGGAACTCCTTATATG 220620 Query 104936 CTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGT 104995 ||||||||||| || || || | |||||||||||| |||| | ||| || || | Sbjct 220621 CTTTACAAAGATGCTTGCAATCGCAAGAGTAATCAACAGAACATTGGTACTATAAAATCT 220680 Query 104996 TCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAAC 105055 || | ||||||||||| | |||| || ||||| | || || || ||| Sbjct 220681 AGTAACTTGTGTACAGAAATTGTCGAATACACTTCGGCTGATGAAATTGCAGTTTGCAAC 220740 Query 105056 CTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTATGAA 105115 || || || || || | || || ||| | | || | ||| || |||| | | Sbjct 220741 CTGGCCTCGATTGCATTAAACATGTTCGTGACTACGGATAAAAA---ATACGATTTTAAC 220797 Query 105116 AAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAAAT 105175 ||| | | ||||||||||| | | || | ||||| |||| | | ||||| | || Sbjct 220798 AAATTGAAAGAAGTTACGAAGCTTATAACAAGGAACCTCAACAAAATAATTGACATTAAC 220857 Query 105176 TTTTACCCCGTTG-AGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGG 105234 | ||| |||||| | || | ||||||| || | ||||||||||||||| | || Sbjct 220858 TATTA-TCCGTTGCCGGAAGCCAAAAGATCTAATTTGCGTCACCGTCCAATTGGTATAGG 220916 Query 105235 TGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGACGAAGC 105294 || || || | || || | ||| ||| | || | ||| ||| ||| | || Sbjct 220917 CGTCCAAGGATTTGCTGACGCATTAATTTTAATGCGTTATCCATATGAAAGCGAAAATGC 220976 Query 105295 ----GAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGGCGA 105350 | ||||||| | || || || ||||| ||| ||| ||| | ||||| | Sbjct 220977 TGTTCTATTAAATCAA----CAAATTTTCGAAACCATATATTACGGTGCTTTAGAGGCTA 221032 Query 105351 GTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCAC 105410 | | |||||||| | |||| || || ||||| | ||| ||| |||| | Sbjct 221033 GCTGTGAGTTGGCCAAACAATATGGCCCGTACGAAACATATGAAGGTAGCCCAGTTAGCA 221092 Query 105411 AAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCT--TCACTACGACTGGGA 105468 |||| | ||||||| ||| |||| |||| || || | || || | || |||| Sbjct 221093 AAGGTATTCTTCAATATGACATGT-GGAACAAGAAGCCTA-CTGATCTTTGGGATTGGGC 221150 Query 105469 AGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCCAAT 105528 ||||| || || |||||| | | ||| | ||||| | | | |||| ||||| Sbjct 221151 GGCTCTTAAAGATGACATCAAAAATCATGGTGTGCGTAATTCTTTGTTGGTGGCCCCAAT 221210 Query 105529 GCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGAC 105588 ||| || || || || || ||||| | || || || |||| |||||| || || || | Sbjct 221211 GCCTACGGCATCTACTGCTCAAATTCTTGGCAACAACGAATCCTTTGAGCCGTATACTTC 221270 Query 105589 GAACATCTAT 105598 ||| | ||| Sbjct 221271 AAACGTTTAT 221280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583248762955240