Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq308 178 1e-39 seq53 161 1e-34 seq1 132 5e-26 seq27 104 3e-17 seq79 84.2 2e-11 >seq308 Length=190705 Score = 178 bits (196), Expect = 1e-39 Identities = 181/235 (77%), Gaps = 1/235 (0%) Strand=Plus/Minus Query 27398 TTACTATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTG 27457 |||| ||| |||| || ||||| || || ||||| |||||||| |||||||||||||| | Sbjct 86855 TTACAATA-TGCAGATTTTTGTAAAAACCCTTACGGGCAAGACCATTACTCTTGAGGTCG 86797 Query 27458 AGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTC 27517 || | ||||| |||| |||| |||| || || ||||||||||| ||||||||||| | Sbjct 86796 AGCCCTCTGATACTATTGAAAATGTGAAAGCCAAGATTCAGGACAAAGAGGGAATTCCAC 86737 Query 27518 CAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAG 27577 | ||||| || || | || || ||||| || ||| | || |||| ||| || || | | Sbjct 86736 CCGACCAACAACGATTGATCTTCGCTGGAAAACAATTGGAAGATGGTCGCACATTATCGG 86677 Query 27578 ACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | |||||| | ||||| |||||||| | ||||| || |||||| | || ||||| Sbjct 86676 ATTATAATATTCAAAAAGAATCCACGTTACATCTTGTGTTGCGTTTGCGAGGTGG 86622 >seq53 Length=1361919 Score = 161 bits (178), Expect = 1e-34 Identities = 173/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| ||||| || || | || ||||| || |||||| | ||||| || || Sbjct 1240216 AATGCAAATATTTGTTAAAACTTTGACTGGCAAAACCATTACTTTGGAGGTAGAACCATC 1240275 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| || | ||| | ||||| |||||||| || || || || |||||||||||||| Sbjct 1240276 GGATACTATCGAAAACGTTAAGGCAAAAATTCAAGATAAAGAAGGTATTCCTCCAGACCA 1240335 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||||| | || |||||||| || || || || || | |||||| || | ||||| || Sbjct 1240336 GCAGCGTTTGATCTTTGCTGGCAAACAGCTGGAAGACGGTCGTACTCTCTCGGACTACAA 1240395 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 | | || || ||||| ||| | ||| | || |||||||| ||||||||| Sbjct 1240396 TATACAGAAAGAATCAACTTTGCATTTGGTGTTGCGTCTCCGCGGTGGA 1240444 Score = 152 bits (168), Expect = 6e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| ||||| || | ||||| || || || ||| | || || ||| | Sbjct 1234236 ATGCAAATCTTCGTCAAAACTTTGACCGGTAAAACCATCACTTTGGAAGTCGAGCCTTCC 1234295 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| ||| | || ||||| || ||||| ||||| || ||||| ||||||||| Sbjct 1234296 GATACCATTGAAAACGTCAAAGCTAAGATCCAGGATAAGGAAGGTATTCCCCCAGACCAG 1234355 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| | || || |||||||| ||| | || |||| ||||| || | || ||||| Sbjct 1234356 CAGCGTTTGATCTTCGCTGGTAAACAATTGGAAGATGGCCGTACTCTCTCCGATTATAAC 1234415 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | |||||||| || ||||| ||| | ||||| || || || ||||| Sbjct 1234416 ATTCAAAAGGAGTCTACTCTCCATTTGGTCTTACGCCTGCGTGGTGG 1234462 Score = 141 bits (156), Expect = 1e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||||||||| || || | || ||||| ||||||||| | ||||| ||| | Sbjct 1241562 AATGCAAATCTTTGTTAAAACTTTGACTGGCAAAACTATTACTTTGGAGGTAGAGCCGTC 1241621 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| || | || | || || ||||| || || ||||| || ||| |||| || || Sbjct 1241622 GGATACTATCGAAACGGTTAAAGCAAAAATCCAAGATAAGGAAGGTATTTCTCCCGATCA 1241681 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||||| | || |||||||| || ||| | || || | || || || | || || || Sbjct 1241682 ACAGCGTTTGATCTTTGCTGGCAAACAATTGGAAGACGGGCGCACTCTGTCCGATTAAAA 1241741 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | ||||||| ||||| || || ||| ||||||| ||||||||||| || Sbjct 1241742 TATCCAAAAAGAATCAACACTCCATTTAGTCTTACGTCTTCGCGGAGG 1241789 Score = 138 bits (152), Expect = 1e-27 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||||||||| || || | || ||||| | |||||| | ||||| || || Sbjct 1241334 AATGCAAATCTTTGTAAAAACTTTGACTGGCAAATCCATTACTTTGGAGGTAGAACCATC 1241393 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| || | ||| | || || |||||||| || || || || ||||||||||| || Sbjct 1241394 AGATACTATCGAAAACGTTAAAGCAAAAATTCAAGATAAAGAAGGTATTCCTCCAGATCA 1241453 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||||| | || |||||||| || ||| | || || | ||| || || | || || || Sbjct 1241454 GCAGCGTTTGATCTTTGCTGGCAAACAATTAGAAGACGGTCGCACTCTTTCGGATTACAA 1241513 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 | | || || ||||| ||| | ||| | || ||||||| ||||||||| Sbjct 1241514 TATACAGAAAGAATCAACTTTGCATTTGGTGCTGCGTCTCCGCGGTGGA 1241562 Score = 136 bits (150), Expect = 5e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| || || | || || || || |||||| | || || || || Sbjct 1239989 ATGCAGATCTTTGTTAAAACTTTGACTGGAAAAACCATTACTTTGGAAGTAGAACCATCG 1240048 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | ||| | || || |||||||| || || || || ||||||||||| ||| Sbjct 1240049 GATACTATCGAAAACGTTAAAGCAAAAATTCAAGATAAAGAAGGTATTCCTCCAGATCAG 1240108 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| | ||||||||||| || ||| | || || | || || || | || || ||| Sbjct 1240109 CAGCGTTTGATTTTTGCTGGCAAACAATTAGAAGACGGCCGCACTCTTTCGGATTACAAT 1240168 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 || ||||||||||| || | ||| | || |||||||| || |||||| Sbjct 1240169 GTACAAAAGGAATCTACATTGCATTTGGTGTTGCGTCTCCGTGGTGGA 1240216 Score = 134 bits (148), Expect = 2e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| ||||||||||| | || ||||| ||||| || | ||||||||| | Sbjct 1232572 ATGCAAATTTTTGTCAAGACATTGACTGGCAAAACTATCACCTTGGAGGTTGAGCCTTCC 1232631 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| ||| | |||||||| ||||| || ||||| ||||| || ||||| || Sbjct 1232632 GATACTATTGAGAATGTTAAGGCTAAGATTCAAGATAAGGAAGGAATCCCACCAGATCAA 1232691 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| |||| || |||||||| || | || || | || || | | || || ||| Sbjct 1232692 CAGCGTTTAATCTTCGCTGGTAAACAGTTAGAAGACGGGCGCACATTGTCTGATTACAAT 1232751 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | ||||||||||| || | ||| | ||||| ||| | || || || Sbjct 1232752 ATACAAAAGGAATCTACGTTGCATTTGGTCTTACGTTTGCGTGGCGG 1232798 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| ||||| || || | || ||||| || |||||| | ||||| ||| | Sbjct 1239761 ATGCAAATTTTTGTTAAAACTTTGACTGGCAAAACCATTACTTTGGAGGTAGAGCCTTCC 1239820 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| ||| | || ||||| || || || ||||| || ||||| ||||||||| Sbjct 1239821 GACACTGTTGAAAACGTTAAAGCTAAGATCCAAGATAAGGAAGGTATTCCCCCAGACCAG 1239880 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| | || || |||||||| ||| | || |||| ||| || || | || || || Sbjct 1239881 CAGCGTTTGATCTTCGCTGGTAAACAATTGGAAGATGGTCGCACTCTCTCGGATTACAAC 1239940 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || || ||||| || | ||| |||| |||||| | |||||||| Sbjct 1239941 ATACAGAAAGAATCAACCTTGCATTTAGTGTTGCGTTTGCGCGGTGG 1239987 Score = 123 bits (136), Expect = 3e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||||||||| || ||||| | || ||||| || || ||| | || || || || Sbjct 1232343 AATGCAAATCTTCGTAAAGACATTGACTGGCAAAACAATCACTTTAGAAGTGGAACCATC 1232402 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| |||| |||| | || || || || || ||||| || || |||||||| || || Sbjct 1232403 TGATACAATTGAAAATGTAAAAGCAAAGATCCAAGACAAAGAAGGTATTCCTCCCGATCA 1232462 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||||| | || |||||||| || ||||| || |||| || || | | || || || Sbjct 1232463 GCAGCGTTTGATCTTTGCTGGCAAACAACTGGAAGATGGGCGCACATTGTCTGATTACAA 1232522 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | | ||||| ||||| || | || | || | ||||| || ||||| Sbjct 1232523 TATACAAAAAGAATCAACATTGCACTTGGTTCTACGTCTGCGTGGTGG 1232570 Score = 123 bits (136), Expect = 3e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 27402 TATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTC 27461 || |||||| ||||| || ||||| | || || || ||| | || | ||||||||| | Sbjct 1239529 TAAAATGCAGATCTTCGTGAAGACATTGACTGGGAAAACTGTCACCTTGGAGGTTGAGCC 1239588 Query 27462 AGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGA 27521 |||| |||| ||| | || ||||| ||||| || ||||| ||||| || ||||| Sbjct 1239589 TTCCGATACTATTGAGAATGTTAAAGCTAAGATTCAAGATAAGGAAGGAATCCCACCAGA 1239648 Query 27522 CCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTA 27581 || || ||| |||| || |||||||| || || || || | || || | | || || Sbjct 1239649 TCAACAACGTTTAATATTCGCTGGTAAACAGCTAGAAGACGGGCGCACATTGTCTGATTA 1239708 Query 27582 TAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||| | ||||||||||| || | ||| | ||||||||| | || ||||| Sbjct 1239709 CAATATACAAAAGGAATCTACGTTGCATTTGGTCTTGCGTTTGCGTGGTGG 1239759 >seq1 Length=10097680 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| || || || || ||||| ||||| || |||||| | || |||||| | Sbjct 7547388 AATGCAAATTTTCGTTAAAACTCTTACTGGCAAAACAATTACTTTGGAAGTTGAGCCTTC 7547447 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | |||| |||| | ||||| |||||||||||||| ||||| ||||||||||| || Sbjct 7547448 CGACACTATTGAAAATGTCAAGGCCAAAATTCAGGACAAAGAGGGCATTCCTCCAGATCA 7547507 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||| ||| | || || ||||| || ||| | || |||| || || | | || || || Sbjct 7547508 GCAACGTTTGATCTTCGCTGGCAAACAATTGGAAGATGGGCGGACTTTGTCTGATTACAA 7547567 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | | || || ||||| || | ||| | || | ||| | || ||||| Sbjct 7547568 TATACAGAAAGAATCGACATTGCATTTGGTACTTCGTTTGCGAGGTGG 7547615 >seq27 Length=2268459 Score = 104 bits (114), Expect = 3e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| || || ||||| | | ||| || ||||| ||| | || || || || | Sbjct 2183188 AATGCAAATATTCGTGAAGACATTAATCGGGAATACTATCACTTTGGATGTGGAATCGGC 2183129 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || ||| ||| || | || |||||||||||||| | |||||||||| || Sbjct 2183128 CGAAAGCGTTGAAAGCGTTAAAGCTAAAATTCAGGAGCTACAAAATATTCCTCCAGCTCA 2183069 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||| ||| | |||||||| | |||||||| || || | || | |||| | ||||| Sbjct 2183068 GCAACGTTTGCTTTTTGCTTGGAAGCAACTGGAAAATCAGCGAAGTTTAGCGTATTATAA 2183009 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGT 27614 | | |||||||||||||| | ||| |||| Sbjct 2183008 TATTCAAAAGGAATCCACATTGCATTTAGT 2182979 >seq79 Length=930496 Score = 84.2 bits (92), Expect = 2e-11 Identities = 109/150 (73%), Gaps = 3/150 (2%) Strand=Plus/Minus Query 27484 AAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCT 27543 || || ||||||||||| | | || || || ||||| || | ||| | || | ||| Sbjct 451493 AAAGCCAAAATTCAGGATACAAATGGCATCCCACCAGATCAACGTCGTTTGATCTATGCC 451434 Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACT 27603 |||||||| || || |||| || || ||| || |||||| | ||||||||||||||| Sbjct 451433 GGTAAGCAGCTAGAAGATGGTCACACACTAATGGATTATAATATACAAAAGGAATCCACT 451374 Query 27604 CTTCATCTAGTCTTGCGT---CTTCGCGGT 27630 || ||| | || ||||| ||| ||||| Sbjct 451373 CTCCATATGGTTCTGCGTTTACTTGGCGGT 451344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570298630219120