Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_028449.1 Length=63569 Score E Sequences producing significant alignments: (Bits) Value seq439 167 9e-37 >seq439 Length=76666 Score = 167 bits (184), Expect = 9e-37 Identities = 368/549 (67%), Gaps = 6/549 (1%) Strand=Plus/Minus Query 14107 CCATTGTTCTCCAAATACAAAACCAATTTCCGCCAGTGCTTCGTCCATTTTGTCGATGAA 14166 ||| || || ||||| ||| |||| ||| || | || |||||| | || || || Sbjct 70427 CCACTGCTCGCCAAAGGTAAAGCCAAGTTCAGCTAACGCCATATCCATTCTTTCTATAAA 70368 Query 14167 CTCCGGCACCATCTCATCAAAACTCGTCATGTACTTCTCATCCCGTTCGACCACGACATA 14226 ||| || || ||| ||||| | | ||||| || || || ||||| | | ||| | Sbjct 70367 CTCTGGTACGGACTCTTCAAATTTTGAAATGTATTTATCGTCTCGTTCAATAATGACGTT 70308 Query 14227 ATGCAGGCCTTCACGCTTCATGCGTGGATCGTAGTTGGCGAAGTACCAGGCGTCCTTGTC 14286 || || |||||||| ||||| || || || ||||| || || | ||| ||||| || | Sbjct 70307 GTGAAGTCCTTCACGTTTCATTCGAGGGTCATAGTTAGCAAAATGCCATGCGTCTTTCCC 70248 Query 14287 TGTAACCCACATGCTGAATTGCACCTGGGCCATGTAAGCAGGCTTGATAGCGTCAAAGCC 14346 |||||||||||||| || || ||||| ||||| || | | ||||| |||||||||| Sbjct 70247 CGTAACCCACATGCTAAACTGGACCTGAGCCATATATTCCGATTTGATGCCGTCAAAGCC 70188 Query 14347 GCCAAGCCGGAACTTCATGAAGTCGCGGGAAGTGAAGGGGCATTTAAGCTCAAGGCCGTT 14406 || | || || || |||||||| || || || || || || | ||||| || Sbjct 70187 ATTCAGTCTAAAATTAATAAAGTCGCGTGATGTAAATGGACACTTTAATTCAAGTCCCAG 70128 Query 14407 ACCGTCGCTGCATAAACCGTCGGGAGAGCAGGCGGTGCGCATGCTTTCGTCACGAAAAAT 14466 || || || || || ||||| ||||| || ||||| ||||| || || Sbjct 70127 CCCATCACTACAGTCGCCATCGGGGGAGCACGCTACACGCATATCGTCGTCCTTGAATAT 70068 Query 14467 TATTGG--CGTTTCCGA-GACGGTAACATCCGCGATAAACTCGAAGAGGGCACGGGCATC 14523 || || ||| ||| ||||| | | | | ||||| || || | || | Sbjct 70067 GATGGGGACGT---CGATAACGGTTAACCCTGTAGTGAACTCAAACAGTCGTCTTGCTAC 70011 Query 14524 ATCTTCGTATTGCTTTCCCCATGCGAGCGACTTAGCGTTAACTTCCGGTGCCACGCCAGT 14583 ||||||| || ||||||||| | |||| | | || || ||||| || | || || Sbjct 70010 CTCTTCGTTTTCTTTTCCCCATTCTAGCGGCCTTGCCTTCACTTCGGGAGATTGCCCGGT 69951 Query 14584 ACAAACTTCAGCCAGCAGGGTGTGGAAGTATGACATTTTTGTATCAGGCCATTTGCTGCC 14643 ||||| || || | ||| ||| |||||| ||| || ||||| | ||||||| |||| Sbjct 69950 ACAAATCTCGGCAATCAGCTTGTTGAAGTAAGACCGCTTCGTATCCGTCCATTTGTTGCC 69891 Query 14644 GGAACGTGG 14652 |||||||| Sbjct 69890 TGAACGTGG 69882 Score = 105 bits (116), Expect = 3e-18 Identities = 216/324 (67%), Gaps = 28/324 (9%) Strand=Plus/Minus Query 4971 TGAAATAGCAGTCTTCCAGTTTTTCGAACACTTCCCACGCCCGATCGGTTTCGAGCATTT 5030 |||| || || |||||||||| ||||| |||||||| || ||| || || | ||| | Sbjct 38650 TGAAGTAACAATCTTCCAGTTGCTCGAATACTTCCCATGCTTTATCAGTCTCAAACATCT 38591 Query 5031 TTGCGTGACGGGCTGCGCCGCGTTCTGTCCAGAGGATGAGGGAGCGAACGTTACGGGCGA 5090 | || || | || || ||||||||||||||||||||||| || |||| | ||| Sbjct 38590 TGGCATGTCAAGCGGCTCCGCGTTCTGTCCAGAGGATGAGACTACGTGCGTTTTTGCCGA 38531 Query 5091 TT--TTC----------------------ACAGAGTAGTTAAAAGCTACTCTGTGCTTGA 5126 | ||| ||||||||||| ||||| ||||||| || | Sbjct 38530 CTAATTCGCTAGAAGAAGGATTATCGCCAACAGAGTAGTTTAAAGCGACTCTGTTTTTAA 38471 Query 5127 ACTCACGTAAA--GTTTCACCTTCAAGTTTGAAGAAGTGTTTTTCCTCAATGAAACGACC 5184 | || |||| |||| ||| ||||| | || || || | || ||||| | Sbjct 38470 ATTCTTTTAAATCAATTCA--TTCCAGTTTAACAAAATGCTTACCACAAACAAAACGGTC 38413 Query 5185 TTTGTTTTCGTGGTGATTCTGGCGAATACGAATAGCTTCTGTGCCGTAAAGGTGCGCCAA 5244 ||| |||||||||||||| |||||||| || || | ||| ||| |||| | ||||| Sbjct 38412 TTTATTTTCGTGGTGATTTTGGCGAATGCGGATCGGTTCAGTGGAATAAAACTTAGCCAA 38353 Query 5245 AAGTTCGGTAGTGATAACGGGGAT 5268 | |||||| || || || || || Sbjct 38352 TAATTCGGTGGTTATTACTGGAAT 38329 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 203291909366830