Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq53 131 1e-25 seq308 96.9 2e-15 seq79 82.4 5e-11 >seq53 Length=1361919 Score = 131 bits (144), Expect = 1e-25 Identities = 162/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 || || || |||||||||||||| ||||||||||||||||||||| || || || || Sbjct 1234453 AGGCGTAAGACCAAATGGAGAGTAGACTCCTTTTGAATGTTATAATCGGAGAGAGTACGG 1234394 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| | ||||||||| || || || |||||||| ||||| || || | || ||| Sbjct 1234393 CCATCTTCCAATTGTTTACCAGCGAAGATCAAACGCTGCTGGTCTGGGGGAATACCTTCC 1234334 Query 34609 TTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 || || |||| || | ||| ||| | ||| || || ||| ||||||| || Sbjct 1234333 TTATCCTGGATC-TTAGCTTTGACGTTTTCAATGGTATCGGAAGGCTCGACTTCCAAAGT 1234275 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || ||||||||||| || ||||| || || || ||||| Sbjct 1234274 GATGGTTTTACCGGTCAAAGTTTTGACGAAGATTTGCAT 1234236 Score = 118 bits (130), Expect = 7e-22 Identities = 162/222 (73%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||||||||||||| | || |||||||| | || ||||| ||||| || || Sbjct 1240206 AGACGCAACACCAAATGCAATGTAGATTCCTTTTGTACATTGTAATCCGAAAGAGTGCGG 1240147 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 ||||||| | |||||| || ||||| || |||||||| || || || || | || || Sbjct 1240146 CCGTCTTCTAATTGTTTGCCAGCAAAAATCAAACGCTGCTGATCTGGAGGAATACCTTCT 1240087 Query 34609 TTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCT--CTCCACTTCCACG 34665 || ||| ||| ||||| ||||||| | || || || || | || ||||||| Sbjct 1240086 TTATCT-TGAATTTTTGCTTTAACGTTTTCGATAGTATC--CGATGGTTCTACTTCCAAA 1240030 Query 34666 GTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || ||||| || || || ||||| ||||| ||||||||| Sbjct 1240029 GTAATGGTTTTTCCAGTCAAAGTTTTAACAAAGATCTGCATG 1239988 Score = 114 bits (126), Expect = 8e-21 Identities = 159/220 (72%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 34491 ACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTC 34550 |||||| |||||||| | || |||||||| || || ||||| || | ||| ||| | Sbjct 1239748 ACGCAAGACCAAATGCAACGTAGATTCCTTTTGTATATTGTAATCAGACAATGTGCGCCC 1239689 Query 34551 GTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTT 34610 |||||| || |||||||| || ||||||||||| ||||| || || || | ||| ||||| Sbjct 1239688 GTCTTCTAGCTGTTTACCAGCGAATATTAAACGTTGTTGATCTGGTGGGATTCCTTCCTT 1239629 Query 34611 GTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTA 34669 ||| ||| || | |||||| | ||| || || ||| || |||| ||| | Sbjct 1239628 ATCT-TGAATCTTAGCTTTAACATTCTCAATAGTATCGGAAGGCTCAACCTCCAAGGTGA 1239570 Query 34670 TCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 ||||| || || || || ||||| || |||||||| || Sbjct 1239569 CAGTTTTCCCAGTCAATGTCTTCACGAAGATCTGCATTTT 1239530 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| || || |||||||| || || ||||| || || ||||| || Sbjct 1241789 CCTCCGCGAAGACGTAAGACTAAATGGAGTGTTGATTCTTTTTGGATATTTTAATCGGAC 1241730 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || ||| ||||||| | |||||| || ||||| || ||||||||||| || || | Sbjct 1241729 AGAGTGCGCCCGTCTTCCAATTGTTTGCCAGCAAAGATCAAACGCTGTTGATCGGGAGAA 1241670 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAA-CGATAAAATTGTGTCTTCGCTCTCCAC 34658 | || ||||| ||| ||| ||||| ||||| || | || || || ||| || Sbjct 1241669 ATACCTTCCTTATCTTGGAT-TTTTGCTTTAACCGTTTCGATAGTATCCGACGGCTCTAC 1241611 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| || || ||||| || || || ||||| ||||| || ||||| Sbjct 1241610 CTCCAAAGTAATAGTTTTGCCAGTCAAAGTTTTAACAAAGATTTGCAT 1241563 Score = 109 bits (120), Expect = 3e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | | ||| || |||||||| | || |||||||| || || ||||| || Sbjct 1232798 CCGCCACGCAAACGTAAGACCAAATGCAACGTAGATTCCTTTTGTATATTGTAATCAGAC 1232739 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | ||| ||| ||||||| | |||||||| || || |||||||||||||| || || || Sbjct 1232738 AATGTGCGCCCGTCTTCTAACTGTTTACCAGCGAAGATTAAACGCTGTTGATCTGGTGGG 1232679 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||| ||||| ||| ||| || | ||||| | ||| || || ||| || Sbjct 1232678 ATTCCTTCCTTATCT-TGAATCTTAGCCTTAACATTCTCAATAGTATCGGAAGGCTCAAC 1232620 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 |||| ||| || ||||| || || || || || |||||||| |||||| Sbjct 1232619 CTCCAAGGTGATAGTTTTGCCAGTCAATGTCTTGACAAAAATTTGCATG 1232571 Score = 98.7 bits (108), Expect = 6e-16 Identities = 157/221 (71%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||||||||||||| | ||| || || || || || || || || || || || Sbjct 1240434 AGACGCAACACCAAATGCAAAGTTGATTCTTTCTGTATATTGTAGTCCGAGAGAGTACGA 1240375 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 ||||||| || ||||| || ||||| || |||||||| ||||| || || | || || Sbjct 1240374 CCGTCTTCCAGCTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCT 1240315 Query 34609 TTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCT--CTCCACTTCCACG 34665 || ||| ||| ||||| |||||| | || || || || | || || |||| Sbjct 1240314 TTATCT-TGAATTTTTGCCTTAACGTTTTCGATAGTATC--CGATGGTTCTACCTCCAAA 1240258 Query 34666 GTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || ||||| || || || ||||| ||||| || ||||| Sbjct 1240257 GTAATGGTTTTGCCAGTCAAAGTTTTAACAAATATTTGCAT 1240217 Score = 89.7 bits (98), Expect = 3e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | | ||| | |||||||||||||| ||||||||| ||||| ||||| || Sbjct 1234234 CCGCCACGTAAACGTAGGACCAAATGGAGAGTAGACTCCTTTTGTATGTTGTAATCGGAG 1234175 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || | ||||| | ||||||||| || || || |||||||| ||||| || || Sbjct 1234174 AGAGTACGGCCATCTTCCAATTGTTTACCAGCGAAGATCAAACGCTGCTGGTCTGGGGG 1234116 >seq308 Length=190705 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| | ||||||||| | ||| | ||| || |||||||| |||||||| || Sbjct 86622 CCACCTCGCAAACGCAACACAAGATGTAACGTGGATTCTTTTTGAATATTATAATCCGAT 86681 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | ||| || | ||||| | |||||| || || || || || || |||||||| || || Sbjct 86682 AATGTGCGACCATCTTCCAATTGTTTTCCAGCGAAGATCAATCGTTGTTGGTCGGGTGGA 86741 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACT 34659 | |||||| ||||| ||||| ||| | | ||| || || | ||| || Sbjct 86742 ATTCCCTCTTTGTCCTGAATCTTGGCTTTCACATTTTCAATAGTATCAGAGGGCTCGACC 86801 Query 34660 TCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 || | || || || || || || | ||||| |||||||||||||| ||| Sbjct 86802 TCAAGAGTAATGGTCTTGCCCGTAAGGGTTTTTACAAAAATCTGCATATTG 86852 >seq79 Length=930496 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/222 (70%), Gaps = 6/222 (3%) Strand=Plus/Plus Query 34491 ACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTC 34550 ||||| |||| |||||||||| |||||||| || |||||||| ||||| | | Sbjct 451356 ACGCAGAACCATATGGAGAGTGGATTCCTTTTGTATATTATAATCCATTAGTGTGTGACC 451415 Query 34551 GTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTT 34610 ||||| || || ||||||||| | || ||||| |||| || || || | || | || Sbjct 451416 ATCTTCTAGCTGCTTACCGGCATAGATCAAACGACGTTGATCTGGTGGGATGCCAT--TT 451473 Query 34611 GTCTG-TGATCTTTTGTTTTAAC-GATAAAATTGTGTCT-TCGCTCTCCACTTCCACGGT 34667 || | ||| ||| | |||||| | | ||| || || ||| | | || || | || Sbjct 451474 GTATCCTGAATTTTGGCTTTAACCGCTTCAATCGTATCGGTCGGTTTT-ACGTCTAATGT 451532 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 || | ||||| |||||||||||||| |||||||| || Sbjct 451533 GATAATATTACCCTCCAACGTTTTCACAAAGATCTGCATATT 451574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314723267148683