Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20brevipalpis_20[genbank_20GCA_5F000671755.1_202014-05-08] 1,651 sequences; 315,360,362 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq308 170 2e-37 seq1 170 2e-37 seq53 168 6e-37 seq146 120 3e-22 seq27 91.5 1e-13 >seq308 Length=190705 Score = 170 bits (188), Expect = 2e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||||||||| || || |||||| | ||||||||||| || || || || Sbjct 86848 ATGCAGATTTTTGTAAAAACCCTTACGGGCAAGACCATTACTCTTGAGGTCGAGCCCTCT 86789 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || ||| || ||||| |||||||| || || |||||||| ||| Sbjct 86788 GATACTATTGAAAATGTGAAAGCCAAGATTCAGGACAAAGAGGGAATTCCACCCGACCAA 86729 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || || || || | ||| || |||||||||||||| || || | || ||||| || Sbjct 86728 CAACGATTGATCTTCGCTGGAAAACAATTGGAAGATGGTCGCACATTATCGGATTATAAT 86669 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 |||||||| || || || |||||| | || ||||||||||| ||||| Sbjct 86668 ATTCAAAAAGAATCCACGTTACATCTTGTGTTGCGTTTGCGAGGTGG 86622 >seq1 Length=10097680 Score = 170 bits (188), Expect = 2e-37 Identities = 177/232 (76%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || |||||||| || ||||| | |||||| | ||||| || || ||| Sbjct 7547389 ATGCAAATTTTCGTTAAAACTCTTACTGGCAAAACAATTACTTTGGAAGTTGAGCCTTCC 7547448 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| |||||||| |||||||| ||||| || || ||||| Sbjct 7547449 GACACTATTGAAAATGTCAAGGCCAAAATTCAGGACAAAGAGGGCATTCCTCCAGATCAG 7547508 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | ||| ||||||||||||||||| | ||| | || |||||||| Sbjct 7547509 CAACGTTTGATCTTCGCTGGCAAACAATTGGAAGATGGGCGGACTTTGTCTGATTACAAT 7547568 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCATAA 27219 || || || || ||||| || |||||||| | |||||||| ||||| |||| Sbjct 7547569 ATACAGAAAGAATCGACATTGCATTTGGTACTTCGTTTGCGAGGTGGTATAA 7547620 >seq53 Length=1361919 Score = 168 bits (186), Expect = 6e-37 Identities = 176/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| |||||| |||| || || | |||||| | ||||| ||||| || Sbjct 1239988 CATGCAGATCTTTGTTAAAACTTTGACTGGAAAAACCATTACTTTGGAAGTAGAACCATC 1240047 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || | || || | || ||| |||||||||||| |||||||| || || || ||||| Sbjct 1240048 GGATACTATCGAAAACGTTAAAGCAAAAATTCAAGATAAAGAAGGTATTCCTCCAGATCA 1240107 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||||| || | || ||||||||||| |||||| | || |||| |||||||| Sbjct 1240108 GCAGCGTTTGATTTTTGCTGGCAAACAATTAGAAGACGGCCGCACTCTTTCGGATTACAA 1240167 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 | |||||||| || || || |||||||| |||||| | || ||||| || Sbjct 1240168 TGTACAAAAGGAATCTACATTGCATTTGGTGTTGCGTCTCCGTGGTGGAAT 1240218 Score = 167 bits (184), Expect = 2e-36 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || |||||||||||| |||| ||||| || |||||| | || || ||||| || Sbjct 1241335 ATGCAAATCTTTGTAAAAACTTTGACTGGCAAATCCATTACTTTGGAGGTAGAACCATCA 1241394 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || ||| |||||||||||| |||||||| || || || ||||| Sbjct 1241395 GATACTATCGAAAACGTTAAAGCAAAAATTCAAGATAAAGAAGGTATTCCTCCAGATCAG 1241454 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||||| || | || ||||||||||| |||||| || || |||| |||||||| Sbjct 1241455 CAGCGTTTGATCTTTGCTGGCAAACAATTAGAAGACGGTCGCACTCTTTCGGATTACAAT 1241514 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || || || || || |||||||| ||||| | || ||||| || Sbjct 1241515 ATACAGAAAGAATCAACTTTGCATTTGGTGCTGCGTCTCCGCGGTGGAAT 1241564 Score = 158 bits (174), Expect = 1e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| |||||| |||| ||||| | |||||| | || || || || ||| Sbjct 1239761 ATGCAAATTTTTGTTAAAACTTTGACTGGCAAAACCATTACTTTGGAGGTAGAGCCTTCC 1239820 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | |||| | || ||| || || ||||| || ||||| || || || || || Sbjct 1239821 GACACTGTTGAAAACGTTAAAGCTAAGATCCAAGATAAGGAAGGTATTCCCCCAGACCAG 1239880 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||||| || | ||| || |||||||||||||| || || | || ||||||||| Sbjct 1239881 CAGCGTTTGATCTTCGCTGGTAAACAATTGGAAGATGGTCGCACTCTCTCGGATTACAAC 1239940 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || || || ||||| ||||| || ||||||||||| |||||||| Sbjct 1239941 ATACAGAAAGAATCAACCTTGCATTTAGTGTTGCGTTTGCGCGGTGGCAT 1239990 Score = 154 bits (170), Expect = 1e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || ||||| || |||| ||||| | || ||| | ||||||||||| || Sbjct 1232344 ATGCAAATCTTCGTAAAGACATTGACTGGCAAAACAATCACTTTAGAAGTGGAACCATCT 1232403 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || ||| ||| || |||||||||||||| || || |||||||| Sbjct 1232404 GATACAATTGAAAATGTAAAAGCAAAGATCCAAGACAAAGAAGGTATTCCTCCCGATCAG 1232463 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||||| || | || ||||||||| ||||||| | || | || |||||||| Sbjct 1232464 CAGCGTTTGATCTTTGCTGGCAAACAACTGGAAGATGGGCGCACATTGTCTGATTACAAT 1232523 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||| || || || || || |||||| | ||| |||| |||||||| Sbjct 1232524 ATACAAAAAGAATCAACATTGCACTTGGTTCTACGTCTGCGTGGTGGCAT 1232573 Score = 150 bits (166), Expect = 2e-31 Identities = 172/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || ||||| || || |||| ||||| |||| || | || || || || || Sbjct 1232571 CATGCAAATTTTTGTCAAGACATTGACTGGCAAAACTATCACCTTGGAGGTTGAGCCTTC 1232630 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||||| || || || |||||||| || ||||| || ||||| ||||| Sbjct 1232631 CGATACTATTGAGAATGTTAAGGCTAAGATTCAAGATAAGGAAGGAATCCCACCAGATCA 1232690 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||||||||| | ||| || ||||| || |||||| | || | || |||||||| Sbjct 1232691 ACAGCGTTTAATCTTCGCTGGTAAACAGTTAGAAGACGGGCGCACATTGTCTGATTACAA 1232750 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || |||||||| || || || |||||||| || |||||||| || || || Sbjct 1232751 TATACAAAAGGAATCTACGTTGCATTTGGTCTTACGTTTGCGTGGCGGTAT 1232801 Score = 150 bits (166), Expect = 2e-31 Identities = 173/232 (75%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| |||||| |||| ||||| |||||||| | || || || ||||| Sbjct 1241563 ATGCAAATCTTTGTTAAAACTTTGACTGGCAAAACTATTACTTTGGAGGTAGAGCCGTCG 1241622 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | ||| ||| |||||| ||||| || ||||| || | ||||||||| Sbjct 1241623 GATACTATCGAAACGGTTAAAGCAAAAATCCAAGATAAGGAAGGTATTTCTCCCGATCAA 1241682 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||||| || | || |||||||||||||||||| | || | |||||||| || Sbjct 1241683 CAGCGTTTGATCTTTGCTGGCAAACAATTGGAAGACGGGCGCACTCTGTCCGATTAAAAT 1241742 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCG--TTTGCGGGGTGGCAT 27217 || ||||| || || || | ||||| || || || || |||| | ||||| Sbjct 1241743 ATCCAAAAAGAATCAACACTCCATTTAGTCTTACGTCTTCGCGGAGGGGCAT 1241794 Score = 149 bits (164), Expect = 5e-31 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||| || || || | || | || || || || ||| Sbjct 1239533 ATGCAGATCTTCGTGAAGACATTGACTGGGAAAACTGTCACCTTGGAGGTTGAGCCTTCC 1239592 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| || ||| || |||||||| || ||||| || ||||| |||||| Sbjct 1239593 GATACTATTGAGAATGTTAAAGCTAAGATTCAAGATAAGGAAGGAATCCCACCAGATCAA 1239652 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || |||||||||| ||| || ||||| | |||||| | || | || |||||||| Sbjct 1239653 CAACGTTTAATATTCGCTGGTAAACAGCTAGAAGACGGGCGCACATTGTCTGATTACAAT 1239712 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || |||||||| || || || |||||||| ||||||||||| ||||| || Sbjct 1239713 ATACAAAAGGAATCTACGTTGCATTTGGTCTTGCGTTTGCGTGGTGGTAT 1239762 Score = 145 bits (160), Expect = 7e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || |||||| ||||||| || | || ||| | ||||| || || ||| Sbjct 1234236 ATGCAAATCTTCGTCAAAACTTTGACCGGTAAAACCATCACTTTGGAAGTCGAGCCTTCC 1234295 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | |||||| || || || || || ||||| || || || || || Sbjct 1234296 GATACCATTGAAAACGTCAAAGCTAAGATCCAGGATAAGGAAGGTATTCCCCCAGACCAG 1234355 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||||| || | ||| || |||||||||||||| | || | |||||||| ||| Sbjct 1234356 CAGCGTTTGATCTTCGCTGGTAAACAATTGGAAGATGGCCGTACTCTCTCCGATTATAAC 1234415 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||||||||| || | |||||||| || || |||| ||||| || Sbjct 1234416 ATTCAAAAGGAGTCTACTCTCCATTTGGTCTTACGCCTGCGTGGTGGTAT 1234465 Score = 145 bits (160), Expect = 7e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| |||||||| |||||| |||| ||||| | |||||| | || || ||||| || Sbjct 1240217 ATGCAAATATTTGTTAAAACTTTGACTGGCAAAACCATTACTTTGGAGGTAGAACCATCG 1240276 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || || |||||||||||| |||||||| || || || || || Sbjct 1240277 GATACTATCGAAAACGTTAAGGCAAAAATTCAAGATAAAGAAGGTATTCCTCCAGACCAG 1240336 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||||| || | || |||||||| |||||||| || || | || || ||||| Sbjct 1240337 CAGCGTTTGATCTTTGCTGGCAAACAGCTGGAAGACGGTCGTACTCTCTCGGACTACAAT 1240396 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || || || || || |||||||| |||||| | || ||||| || Sbjct 1240397 ATACAGAAAGAATCAACTTTGCATTTGGTGTTGCGTCTCCGCGGTGGAAT 1240446 Score = 86.0 bits (94), Expect = 5e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 27096 CCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT 27155 || || || || |||||||| || | ||| || |||||||||||||| | || | Sbjct 1234116 CCCCCAGACCAGCAGCGTTTGATCTTCGCTGGTAAACAATTGGAAGATGGCCGTACTCTC 1234175 Query 27156 TCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 |||||||||||||| ||||||||||| || | |||||||| | ||||| || || || Sbjct 1234176 TCCGATTACAACATACAAAAGGAGTCTACTCTCCATTTGGTCCTACGTTTACGTGGCGGT 1234235 Query 27216 AT 27217 || Sbjct 1234236 AT 1234237 >seq146 Length=585010 Score = 120 bits (132), Expect = 3e-22 Identities = 116/149 (78%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 135504 GAGAAGGCAAAATGCACGGATTTATGCGCATGTATTGGGCAAAAAAGATATTGGAATGGT 135563 |||| || ||||||||||| ||| |||||||||||||||| |||||||| ||||||||| Sbjct 532039 GAGAGGGTAAAATGCACGGTTTTTTGCGCATGTATTGGGCGAAAAAGATTCTGGAATGGT 531980 Query 135564 CTGCATCGCCTGCAGAGGCGCTACAACACGCAATATTTTTTAATGATTACTACAGTTTAG 135623 || | | |||| ||| || || || || ||||||| |||||| | |||||||| | Sbjct 531979 CTAAAACTCCTGAAGACGCTTTAGAAATTTCACTATTTTTAAATGATAAGTACAGTTTGG 531920 Query 135624 ATGGACGCGATTCAAATGGCTACGTAGGT 135652 ||||| ||| | || || ||||| ||| Sbjct 531919 ATGGAACGGATCCTAACGGTTACGTGGGT 531891 Score = 87.8 bits (96), Expect = 2e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 135649 AGGTTGTATGTGGTCTATTTGCGGTGTACACGATCAAGGATGGAAGGAGCGCAAAGTGTT 135708 ||||||||||||||| || | ||| | ||||| ||||| ||| |||||| ||| || Sbjct 531834 AGGTTGTATGTGGTCCATAGGTGGTATCCACGACCAAGGCTGGCGTGAGCGCGCAGTCTT 531775 Query 135709 TGGCAAGATTCGCTATATGAACTATGACGGTTGTACAAGAAAATTTAATGT 135759 ||| || || || |||||||||||| | || |||| | | |||||| |||| Sbjct 531774 TGGTAAAATACGTTATATGAACTATCAAGGCTGTAAACGTAAATTTGATGT 531724 >seq27 Length=2268459 Score = 91.5 bits (100), Expect = 1e-13 Identities = 119/162 (73%), Gaps = 2/162 (1%) Strand=Plus/Minus Query 27063 GTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATAC 27122 || ||| ||| || ||| |||||||| || |||| || ||||| |||||| | | Sbjct 2182884 GTGAAAGTAAAGCTTGAAGCTAAAGAAGGAATCGCACCAGAACAACAATTTTTAATCTTC 2182825 Query 27123 GCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCG 27182 |||||| ||||||||||||||| | | | ||||||||| || ||||||||||| Sbjct 2182824 GCCGGCCAACAATTGGAAGACAAACGTAAATTATGCGATTACAATATACAAAAGGAGTCC 2182765 Query 27183 ACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCATA-ACAAA 27223 | || ||||| || || ||| | || ||||| ||| ||||| Sbjct 2182764 AAATTGCATTTAGTGTTACGTCTACGTGGTGG-ATATACAAA 2182724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434909424371520